Spo24863 (gene) | SpinachBase

Overview


Name	Spo24863
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Outer envelope pore protein 24, chloroplastic (Chloroplastic outer envelope pore protein of 24 kDa)
Location	chr3 : 52949117 .. 52949970 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCACCCGCCAAACCTACCTCCATCCCCGCCTACTTGGGGCGGATGCGGGGCGGGTCTCCCGCAAAACCCGCCCCACTGACATCCCTAACTCTATCCAGTCCCCGCCAATAATGTGGAAGGCATCGATGAACGGACAATGCGCCGCCGAAAGCAGTGCCGCCGCCGCCGCCACTTTCACCATCAACGCCGGCGACGTCAAGCTGAAAGCCGCCCTTTCTGAAGCCGCCACCTTCAACGCTATCCCCAGCTTCAGCAACCTTTCTCTCTCTCTTGAAAAACCAGGCTCTTTCATCGTCGATTACCACGCCCCGAAACAAGTAAATTCTTCTCTTTTATCTTTATCTTTATCTTACGTTTCCTTAACTCAATAATTGATTCAATTGCCGAAGAGTAACCTCAACTTTTTTGTGTTATTTATTTATTGGGGGTGACAGGATTTGAGGTTTCAATTTATGAACTCAATTAGGGTTTTAGACAAGCGACTGAACATGACATACACGCATTCTAGGGTAGAGAAGAACTTGTTGTTGGATGGGACGCTGGTGATTGATTCGTCGAATAAGGTTACCGCGAATTGTGATTTTGAGTCTGGGATTCGGAAATTGAAGTATAGTTATAGTCATGGAGGAGGGGATACCACTTTCGAACCATGTTATGATGTTTCCAAGAATTCCTGGGATTTCGCGGCTTTTCAGAGGATTCATGGGGGTGATGTAGTTAAGGCTTCTTATCAGACTTCTACCAAGGTTTTGGGGTTGGAGTGGTCTCGATCCTCGCCTTTCAATGGTTCTTTCAAGGTACATTCTAAGAGATTTCTGTTCATTTTGGTTGAGTTTGCTATAATTGTTTGA

mRNA sequence

CCATCACCCGCCAAACCTACCTCCATCCCCGCCTACTTGGGGCGGATGCGGGGCGGGTCTCCCGCAAAACCCGCCCCACTGACATCCCTAACTCTATCCAGTCCCCGCCAATAATGTGGAAGGCATCGATGAACGGACAATGCGCCGCCGAAAGCAGTGCCGCCGCCGCCGCCACTTTCACCATCAACGCCGGCGACGTCAAGCTGAAAGCCGCCCTTTCTGAAGCCGCCACCTTCAACGCTATCCCCAGCTTCAGCAACCTTTCTCTCTCTCTTGAAAAACCAGGCTCTTTCATCGTCGATTACCACGCCCCGAAACAAGATTTGAGGTTTCAATTTATGAACTCAATTAGGGTTTTAGACAAGCGACTGAACATGACATACACGCATTCTAGGGTAGAGAAGAACTTGTTGTTGGATGGGACGCTGGTGATTGATTCGTCGAATAAGGTTACCGCGAATTGTGATTTTGAGTCTGGGATTCGGAAATTGAAGTATAGTTATAGTCATGGAGGAGGGGATACCACTTTCGAACCATGTTATGATGTTTCCAAGAATTCCTGGGATTTCGCGGCTTTTCAGAGGATTCATGGGGGTGATGTAGTTAAGGCTTCTTATCAGACTTCTACCAAGGTTTTGGGGTTGGAGTGGTCTCGATCCTCGCCTTTCAATGGTTCTTTCAAGGTACATTCTAAGAGATTTCTGTTCATTTTGGTTGAGTTTGCTATAATTGTTTGA

Coding sequence (CDS)

ATGTGGAAGGCATCGATGAACGGACAATGCGCCGCCGAAAGCAGTGCCGCCGCCGCCGCCACTTTCACCATCAACGCCGGCGACGTCAAGCTGAAAGCCGCCCTTTCTGAAGCCGCCACCTTCAACGCTATCCCCAGCTTCAGCAACCTTTCTCTCTCTCTTGAAAAACCAGGCTCTTTCATCGTCGATTACCACGCCCCGAAACAAGATTTGAGGTTTCAATTTATGAACTCAATTAGGGTTTTAGACAAGCGACTGAACATGACATACACGCATTCTAGGGTAGAGAAGAACTTGTTGTTGGATGGGACGCTGGTGATTGATTCGTCGAATAAGGTTACCGCGAATTGTGATTTTGAGTCTGGGATTCGGAAATTGAAGTATAGTTATAGTCATGGAGGAGGGGATACCACTTTCGAACCATGTTATGATGTTTCCAAGAATTCCTGGGATTTCGCGGCTTTTCAGAGGATTCATGGGGGTGATGTAGTTAAGGCTTCTTATCAGACTTCTACCAAGGTTTTGGGGTTGGAGTGGTCTCGATCCTCGCCTTTCAATGGTTCTTTCAAGGTACATTCTAAGAGATTTCTGTTCATTTTGGTTGAGTTTGCTATAATTGTTTGA

Protein sequence

MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSFIVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFESGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWSRSSPFNGSFKVHSKRFLFILVEFAIIV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24863.1	Spo24863.1	mRNA

Homology

[Close]

BLAST of Spo24863.1 vs. NCBI nr
Match: gi|902213540|gb|KNA17282.1| (hypothetical protein SOVF_081410, partial [Spinacia oleracea])

HSP 1 Score: 409.5 bits (1051), Expect = 3.600e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1

		  
Query: 1   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 60
           MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF
Sbjct: 5   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 64

Query: 61  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 120
           IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE
Sbjct: 65  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 124

Query: 121 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 180
           SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS
Sbjct: 125 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 184

Query: 181 RSSPFNGSFKVHSKRFLFILVEFAIIV 208
           RSSPFNGSFKVHSKRFLFILVEFAIIV
Sbjct: 185 RSSPFNGSFKVHSKRFLFILVEFAIIV 211

[Close]

BLAST of Spo24863.1 vs. NCBI nr
Match: gi|731339385|ref|XP_010680822.1| (PREDICTED: outer envelope pore protein 24A, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 289.3 bits (739), Expect = 5.400e-75
Identity = 148/191 (77.49%), Postives = 163/191 (85.34%), Query Frame = 1

		  
Query: 1   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 60
           MW AS+ GQCAA+SS AAA T T+NAG+VKLKAALSEA  F   PSFSNLSLSLEKP SF
Sbjct: 1   MWNASIKGQCAADSSGAAA-TITVNAGEVKLKAALSEA-NFEVGPSFSNLSLSLEKPASF 60

Query: 61  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 120
           I+DYH PKQDLRFQFMNSIRVLDK+LN+TYTHSR EKNL LDGTL+IDSSNKV+AN  F+
Sbjct: 61  IIDYHVPKQDLRFQFMNSIRVLDKQLNLTYTHSRREKNLWLDGTLIIDSSNKVSANYKFD 120

Query: 121 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 180
           SG  KLKY YS  GG  TFEPCYDVSKN WDF   QRI+GGDVVKASYQTSTK+LG +WS
Sbjct: 121 SGNCKLKYCYSQEGGVRTFEPCYDVSKNCWDFIVSQRIYGGDVVKASYQTSTKILGFQWS 180

Query: 181 RSSPFNGSFKV 192
           R+SPF+GSFKV
Sbjct: 181 RTSPFSGSFKV 189

[Close]

BLAST of Spo24863.1 vs. NCBI nr
Match: gi|719996835|ref|XP_010254902.1| (PREDICTED: outer envelope pore protein 24A, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 223.0 bits (567), Expect = 4.800e-55
Identity = 114/189 (60.32%), Postives = 146/189 (77.25%), Query Frame = 1

		  
Query: 3   KASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSFIV 62
           K S+  +   + S+AAA T  INAGDVKL+A++++A   N  PS + LSLS+EKPG FIV
Sbjct: 2   KTSLKARYETDKSSAAA-TLAINAGDVKLRASMTDATVVNG-PSLNGLSLSVEKPGFFIV 61

Query: 63  DYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFESG 122
           DY+ P+QD+RFQFMN+IRV +K LN+TY H R +   +LDGTLV+DS+NKV+AN  F SG
Sbjct: 62  DYNVPRQDVRFQFMNTIRVAEKPLNLTYIHGRGDNRTVLDGTLVLDSANKVSANYVFGSG 121

Query: 123 IRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWSRS 182
             KLKY+Y H GG  TFEPCYD++KNSWDFA  QR++G DV +ASYQTS+K+LGLEWSR 
Sbjct: 122 NCKLKYAYVH-GGVRTFEPCYDLTKNSWDFAVSQRVYGEDVFRASYQTSSKLLGLEWSRD 181

Query: 183 SPFNGSFKV 192
           S  NG+FK+
Sbjct: 182 SKLNGTFKI 187

[Close]

BLAST of Spo24863.1 vs. NCBI nr
Match: gi|1009134753|ref|XP_015884617.1| (PREDICTED: outer envelope pore protein 24A, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 214.2 bits (544), Expect = 2.200e-52
Identity = 111/189 (58.73%), Postives = 145/189 (76.72%), Query Frame = 1

		  
Query: 3   KASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSFIV 62
           KAS+ G+   + S AAA TF +NAGDVKL+A++++A TF   P+ + L+LS+EKPG FIV
Sbjct: 2   KASVKGRYDTDKSGAAA-TFGVNAGDVKLRASMTDA-TFVGGPNLNGLALSVEKPGFFIV 61

Query: 63  DYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFESG 122
           DY+ PK+D RFQFMNS+RV +K LN+TY H R +   +LDGTL  D +NKV+AN    +G
Sbjct: 62  DYNVPKKDFRFQFMNSVRVAEKPLNLTYIHHRGDNRTILDGTLAFDPANKVSANYLLGTG 121

Query: 123 IRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWSRS 182
             KLKY+Y H  G TTFEPCYD++KNSWDFA  +R++G DV KA+YQTS+++LGLEWSR+
Sbjct: 122 NCKLKYTYVH-QGVTTFEPCYDLAKNSWDFAISRRVYGEDVFKATYQTSSQLLGLEWSRN 181

Query: 183 SPFNGSFKV 192
           S  NGSFKV
Sbjct: 182 SKLNGSFKV 187

[Close]

BLAST of Spo24863.1 vs. NCBI nr
Match: gi|747073487|ref|XP_011083705.1| (PREDICTED: outer envelope pore protein 24A, chloroplastic-like [Sesamum indicum])

HSP 1 Score: 213.0 bits (541), Expect = 4.900e-52
Identity = 107/191 (56.02%), Postives = 146/191 (76.44%), Query Frame = 1

		  
Query: 1   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 60
           M KAS   +   +  AAAAAT ++NAGD+K +A++++A   N  PS + LSL++E+PG F
Sbjct: 1   MMKASFKARYEPDK-AAAAATVSVNAGDLKFRASITDATVVNG-PSLNGLSLAVERPGFF 60

Query: 61  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 120
           +VDY+ PK+D RFQFMN++RV +K LN++YTH + +   +LDGTLVIDS+NKV+ N   +
Sbjct: 61  VVDYNVPKKDFRFQFMNTVRVAEKSLNLSYTHLKGDARTILDGTLVIDSANKVSVNHVLD 120

Query: 121 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 180
           +G  KLKYSY H GG TTFEP YD++KN+WDFA  +R++G DV +A+YQTS+K LGLEWS
Sbjct: 121 TGNTKLKYSYLH-GGLTTFEPSYDLAKNTWDFAVSRRVYGDDVFRATYQTSSKNLGLEWS 180

Query: 181 RSSPFNGSFKV 192
           RSS  NGSFK+
Sbjct: 181 RSSKLNGSFKI 188

[Close]

BLAST of Spo24863.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REK3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_081410 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 2.500e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1

		  
Query: 1   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 60
           MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF
Sbjct: 5   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 64

Query: 61  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 120
           IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE
Sbjct: 65  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 124

Query: 121 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 180
           SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS
Sbjct: 125 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 184

Query: 181 RSSPFNGSFKVHSKRFLFILVEFAIIV 208
           RSSPFNGSFKVHSKRFLFILVEFAIIV
Sbjct: 185 RSSPFNGSFKVHSKRFLFILVEFAIIV 211

[Close]

BLAST of Spo24863.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F0K5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g137620 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.800e-75
Identity = 148/191 (77.49%), Postives = 163/191 (85.34%), Query Frame = 1

		  
Query: 1   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 60
           MW AS+ GQCAA+SS AAA T T+NAG+VKLKAALSEA  F   PSFSNLSLSLEKP SF
Sbjct: 1   MWNASIKGQCAADSSGAAA-TITVNAGEVKLKAALSEA-NFEVGPSFSNLSLSLEKPASF 60

Query: 61  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 120
           I+DYH PKQDLRFQFMNSIRVLDK+LN+TYTHSR EKNL LDGTL+IDSSNKV+AN  F+
Sbjct: 61  IIDYHVPKQDLRFQFMNSIRVLDKQLNLTYTHSRREKNLWLDGTLIIDSSNKVSANYKFD 120

Query: 121 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 180
           SG  KLKY YS  GG  TFEPCYDVSKN WDF   QRI+GGDVVKASYQTSTK+LG +WS
Sbjct: 121 SGNCKLKYCYSQEGGVRTFEPCYDVSKNCWDFIVSQRIYGGDVVKASYQTSTKILGFQWS 180

Query: 181 RSSPFNGSFKV 192
           R+SPF+GSFKV
Sbjct: 181 RTSPFSGSFKV 189

[Close]

BLAST of Spo24863.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBF3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_203460 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.400e-52
Identity = 113/192 (58.85%), Postives = 145/192 (75.52%), Query Frame = 1

		  
Query: 3   KASMNGQCAAE---SSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGS 62
           KAS+ G+   E   S+ AA +T  I  GD KL+A++++A TF   PSF+ L+LSLEKPG 
Sbjct: 5   KASLKGKYEYETDKSTTAATSTIAIPTGDFKLRASITDA-TFVKGPSFNGLALSLEKPGF 64

Query: 63  FIVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDF 122
           FIVDY+ PK+D RFQFMNS+RVL+K+LNMTY HS+ +   +LDGTLV+DSSNKV+AN   
Sbjct: 65  FIVDYNVPKKDFRFQFMNSVRVLEKQLNMTYIHSKNDNRTILDGTLVLDSSNKVSANHML 124

Query: 123 ESGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEW 182
            S   KLKY+Y H  G TTFEP YD+ KNSWDFA  +R++G DV+KASYQTS ++LGL+W
Sbjct: 125 GSTNGKLKYTYVH-KGVTTFEPSYDLKKNSWDFALSRRVYGDDVLKASYQTSNQILGLDW 184

Query: 183 SRSSPFNGSFKV 192
           SR+S  NG FK+
Sbjct: 185 SRTSKTNGCFKI 194

[Close]

BLAST of Spo24863.1 vs. UniProtKB/TrEMBL
Match: B9R7S0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593920 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.300e-51
Identity = 107/191 (56.02%), Postives = 144/191 (75.39%), Query Frame = 1

		  
Query: 1   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 60
           M KAS+ G+   + S+AAAA    NAGDVKL+A++++A      PS + L L++EKPG F
Sbjct: 1   MMKASLKGRYETDKSSAAAAV-AFNAGDVKLRASMTDATVVKG-PSLNGLVLAVEKPGFF 60

Query: 61  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 120
           +VDY+ PK+D RFQFM++I+V DK LN+TY HSR +   +LDG LV+DS+NK+ AN    
Sbjct: 61  MVDYNVPKKDFRFQFMSTIKVADKPLNLTYIHSRGDNRTVLDGALVLDSANKLAANHILG 120

Query: 121 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 180
           SG  KLKY+Y H GG TTFEPCYD++KNSWDFA  ++++  DV +A+YQTS+K LGLEWS
Sbjct: 121 SGNCKLKYTYVH-GGVTTFEPCYDLAKNSWDFAVSRKVYADDVFRATYQTSSKALGLEWS 180

Query: 181 RSSPFNGSFKV 192
           R+S FNG+FK+
Sbjct: 181 RNSKFNGNFKI 188

[Close]

BLAST of Spo24863.1 vs. UniProtKB/TrEMBL
Match: M5XFC4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011384mg PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.200e-51
Identity = 111/191 (58.12%), Postives = 143/191 (74.87%), Query Frame = 1

		  
Query: 1   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 60
           M KAS+ G+   + S AAA   ++ A DVK +A+L++A TF A PS + L L++EKPGSF
Sbjct: 1   MMKASLKGKYETDKSGAAA-NISVFASDVKFRASLTDA-TFAAGPSLNGLVLAVEKPGSF 60

Query: 61  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 120
           IVDY+ PK+D RFQF+NS+RV  K LN+ Y HSR +   +LDGTLV+DS+NKV+AN    
Sbjct: 61  IVDYNVPKKDFRFQFLNSVRVAGKPLNLNYIHSRGDNRTILDGTLVLDSANKVSANHVLG 120

Query: 121 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 180
           S   K KYSY H GG TTFEP YD++KNSWDFA  +R++G DV +ASYQTS+K+LGLEWS
Sbjct: 121 SRNGKFKYSYLH-GGVTTFEPSYDLAKNSWDFAVSRRVYGDDVFRASYQTSSKLLGLEWS 180

Query: 181 RSSPFNGSFKV 192
           R+S  NGSF+V
Sbjct: 181 RNSKINGSFRV 188

[Close]

BLAST of Spo24863.1 vs. ExPASy Swiss-Prot
Match: OEP24_PEA (Outer envelope pore protein 24, chloroplastic OS=Pisum sativum GN=OEP24 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.900e-52
Identity = 107/189 (56.61%), Postives = 141/189 (74.60%), Query Frame = 1

		  
Query: 3   KASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSFIV 62
           KA++ G+   + +++ AAT   NAGDVKL+A++++A TF   PS + L L++EKPGSF V
Sbjct: 2   KAALKGKYDLDHNSSGAATVAFNAGDVKLRASITDA-TFKNSPSLTGLVLAVEKPGSFSV 61

Query: 63  DYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFESG 122
           DY+ PK+D RFQFMN++RV +K LN+ Y HS+ +   +LDGTLV D SNKV+AN   ESG
Sbjct: 62  DYNVPKKDFRFQFMNTVRVAEKPLNLAYIHSKGDNRTILDGTLVWDPSNKVSANYAVESG 121

Query: 123 IRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWSRS 182
             KLKYSY+H  G TT EP YDV+KNSWDFA   +++G D +KASYQTS+KVLGLEW+R+
Sbjct: 122 NCKLKYSYNH-KGLTTIEPTYDVAKNSWDFAVSGKVYGDDSLKASYQTSSKVLGLEWTRN 181

Query: 183 SPFNGSFKV 192
           S   G FKV
Sbjct: 182 SKQTGCFKV 188

[Close]

BLAST of Spo24863.1 vs. ExPASy Swiss-Prot
Match: OP24A_ARATH (Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis thaliana GN=OEP24A PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.600e-50
Identity = 102/191 (53.40%), Postives = 141/191 (73.82%), Query Frame = 1

		  
Query: 1   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 60
           M KAS  G+   + S + A+  T NAG+ KL+A +++A+ F A PSF+ LSL++EKPG F
Sbjct: 1   MMKASFKGKFDVDKSGSVAS-LTFNAGNAKLRATMTDAS-FVAGPSFNGLSLAVEKPGFF 60

Query: 61  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 120
           I+DY+ PK+D+RFQFMN+IR+ +K LN+TY H R +   ++DG+ VID +NK++AN    
Sbjct: 61  IIDYNVPKKDVRFQFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVG 120

Query: 121 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 180
           +   KLKY+Y H GG  TFEPCYDV+KN WDFA   +++GGD +KA+YQTS+K+LGLEWS
Sbjct: 121 TKNCKLKYTYVH-GGIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKMLGLEWS 180

Query: 181 RSSPFNGSFKV 192
            +S   GSFKV
Sbjct: 181 NNSKSTGSFKV 188

[Close]

BLAST of Spo24863.1 vs. ExPASy Swiss-Prot
Match: OP24B_ARATH (Outer envelope pore protein 24B, chloroplastic OS=Arabidopsis thaliana GN=OEP24B PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.300e-47
Identity = 95/189 (50.26%), Postives = 144/189 (76.19%), Query Frame = 1

		  
Query: 3   KASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSFIV 62
           KAS+ G+   + ++   +    NAGD+KL+A +++A T  A P+ + L+L++EKPGSFIV
Sbjct: 4   KASIKGKYDTDKTSGIGS-LAFNAGDIKLRATMTDA-TLVAGPTLTGLALAVEKPGSFIV 63

Query: 63  DYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFESG 122
           +Y+ PK+D+RFQFMN++R+ +K LN+TY HSR +   ++DG+LVIDS+NK++AN    + 
Sbjct: 64  EYNVPKKDVRFQFMNTVRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTN 123

Query: 123 IRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWSRS 182
             K+KY+Y+H GG  TFEPCYD++KN+WDFA  +R + GD V+A+YQTS+K+LG+EWSR+
Sbjct: 124 NCKIKYTYAH-GGLATFEPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEWSRN 183

Query: 183 SPFNGSFKV 192
           +  +G FKV
Sbjct: 184 NKASG-FKV 188

[Close]

BLAST of Spo24863.1 vs. ExPASy Swiss-Prot
Match: OEP24_ORYSI (Outer envelope pore protein 24, chloroplastic OS=Oryza sativa subsp. indica GN=OEP24 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.800e-38
Identity = 87/199 (43.72%), Postives = 128/199 (64.32%), Query Frame = 1

		  
Query: 3   KASMNGQCAAESSAAAAA-TFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSFI 62
           KA++ G+   + + AAA   FT +A D++ KA+ ++AA F   PS   L+L+LEKPGSF+
Sbjct: 2   KATVKGRYEGDKATAAATLAFTPSAADLRFKASATDAA-FARGPSLEGLTLTLEKPGSFL 61

Query: 63  VDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHS--------RVEKNLLLDGTLVIDSSNKV 122
           +D     +D+RFQFMNS  +LD+R+++TYTHS        +      LDG+L  D +NK+
Sbjct: 62  LDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPAKPPARTALDGSLTFDPANKL 121

Query: 123 TANCDFESGIRKLKYSYSHGGGD-TTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTST 182
           + +    S   ++KYSY+HG    TT EPC+D + N+WDFA  ++  GGD +KA+YQ ST
Sbjct: 122 SLSHTLGSSGCRVKYSYAHGQDRLTTIEPCFDTANNAWDFAVTRKFQGGDAIKATYQAST 181

Query: 183 KVLGLEWSRSSPFNGSFKV 192
           K+L L+W+R S    SFKV
Sbjct: 182 KLLALDWTRDSKIGASFKV 199

[Close]

BLAST of Spo24863.1 vs. ExPASy Swiss-Prot
Match: OEP24_ORYSJ (Outer envelope pore protein 24, chloroplastic OS=Oryza sativa subsp. japonica GN=OEP24 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.800e-38
Identity = 87/199 (43.72%), Postives = 128/199 (64.32%), Query Frame = 1

		  
Query: 3   KASMNGQCAAESSAAAAA-TFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSFI 62
           KA++ G+   + + AAA   FT +A D++ KA+ ++AA F   PS   L L+LEKPGSF+
Sbjct: 2   KATVKGRYEGDKATAAATLAFTPSAADLRFKASATDAA-FARGPSLEGLILTLEKPGSFL 61

Query: 63  VDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHS--------RVEKNLLLDGTLVIDSSNKV 122
           +D     +D+RFQFMNS  +LD+R+++TYTHS        ++     LDG+L  D +NK+
Sbjct: 62  LDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPAKLPARTALDGSLTFDPANKL 121

Query: 123 TANCDFESGIRKLKYSYSHGGGD-TTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTST 182
           + +    S   ++KYSY+HG    TT EPC+D + N+WDFA  ++  GGD +KA+YQ ST
Sbjct: 122 SLSHTLGSSGCRVKYSYAHGQDRLTTIEPCFDTANNAWDFAVTRKFQGGDAIKATYQAST 181

Query: 183 KVLGLEWSRSSPFNGSFKV 192
           K+L L+W+R S    SFKV
Sbjct: 182 KLLALDWTRDSKIGASFKV 199

[Close]

BLAST of Spo24863.1 vs. TAIR (Arabidopsis)
Match: AT1G45170.1 (unknown protein)

HSP 1 Score: 199.1 bits (505), Expect = 2.600e-51
Identity = 102/191 (53.40%), Postives = 141/191 (73.82%), Query Frame = 1

		  
Query: 1   MWKASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSF 60
           M KAS  G+   + S + A+  T NAG+ KL+A +++A+ F A PSF+ LSL++EKPG F
Sbjct: 1   MMKASFKGKFDVDKSGSVAS-LTFNAGNAKLRATMTDAS-FVAGPSFNGLSLAVEKPGFF 60

Query: 61  IVDYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFE 120
           I+DY+ PK+D+RFQFMN+IR+ +K LN+TY H R +   ++DG+ VID +NK++AN    
Sbjct: 61  IIDYNVPKKDVRFQFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVG 120

Query: 121 SGIRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWS 180
           +   KLKY+Y H GG  TFEPCYDV+KN WDFA   +++GGD +KA+YQTS+K+LGLEWS
Sbjct: 121 TKNCKLKYTYVH-GGIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKMLGLEWS 180

Query: 181 RSSPFNGSFKV 192
            +S   GSFKV
Sbjct: 181 NNSKSTGSFKV 188

[Close]

BLAST of Spo24863.1 vs. TAIR (Arabidopsis)
Match: AT5G42960.1 (unknown protein)

HSP 1 Score: 191.0 bits (484), Expect = 7.100e-49
Identity = 95/189 (50.26%), Postives = 144/189 (76.19%), Query Frame = 1

		  
Query: 3   KASMNGQCAAESSAAAAATFTINAGDVKLKAALSEAATFNAIPSFSNLSLSLEKPGSFIV 62
           KAS+ G+   + ++   +    NAGD+KL+A +++A T  A P+ + L+L++EKPGSFIV
Sbjct: 4   KASIKGKYDTDKTSGIGS-LAFNAGDIKLRATMTDA-TLVAGPTLTGLALAVEKPGSFIV 63

Query: 63  DYHAPKQDLRFQFMNSIRVLDKRLNMTYTHSRVEKNLLLDGTLVIDSSNKVTANCDFESG 122
           +Y+ PK+D+RFQFMN++R+ +K LN+TY HSR +   ++DG+LVIDS+NK++AN    + 
Sbjct: 64  EYNVPKKDVRFQFMNTVRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTN 123

Query: 123 IRKLKYSYSHGGGDTTFEPCYDVSKNSWDFAAFQRIHGGDVVKASYQTSTKVLGLEWSRS 182
             K+KY+Y+H GG  TFEPCYD++KN+WDFA  +R + GD V+A+YQTS+K+LG+EWSR+
Sbjct: 124 NCKIKYTYAH-GGLATFEPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEWSRN 183

Query: 183 SPFNGSFKV 192
           +  +G FKV
Sbjct: 184 NKASG-FKV 188

The following BLAST results are available for this feature:

BLAST of Spo24863.1 vs. NCBI nr
BLAST of Spo24863.1 vs. UniProtKB/TrEMBL
BLAST of Spo24863.1 vs. ExPASy Swiss-Prot
BLAST of Spo24863.1 vs. TAIR (Arabidopsis)

BLAST of Spo24863.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902213540\|gb\|KNA17282.1\|	3.6e-111	100.	hypothetical protein SOVF_0814...	[more]
gi\|731339385\|ref\|XP_010680822.1\|	5.4e-75	77.4	PREDICTED: outer envelope pore...	[more]
gi\|719996835\|ref\|XP_010254902.1\|	4.8e-55	60.3	PREDICTED: outer envelope pore...	[more]
gi\|1009134753\|ref\|XP_015884617.1\|	2.2e-52	58.7	PREDICTED: outer envelope pore...	[more]
gi\|747073487\|ref\|XP_011083705.1\|	4.9e-52	56.0	PREDICTED: outer envelope pore...	[more]

BLAST of Spo24863.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9REK3_SPIOL	2.5e-111	100.	Uncharacterized protein (Fragm...	[more]
A0A0J8F0K5_BETVU	3.8e-75	77.4	Uncharacterized protein OS=Bet...	[more]
A0A0K9QBF3_SPIOL	3.4e-52	58.8	Uncharacterized protein OS=Spi...	[more]
B9R7S0_RICCO	1.3e-51	56.0	Putative uncharacterized prote...	[more]
M5XFC4_PRUPE	2.2e-51	58.1	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo24863.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
OEP24_PEA	2.9e-52	56.6	Outer envelope pore protein 24...	[more]
OP24A_ARATH	4.6e-50	53.4	Outer envelope pore protein 24...	[more]
OP24B_ARATH	1.3e-47	50.2	Outer envelope pore protein 24...	[more]
OEP24_ORYSI	1.8e-38	43.7	Outer envelope pore protein 24...	[more]
OEP24_ORYSJ	1.8e-38	43.7	Outer envelope pore protein 24...	[more]

BLAST of Spo24863.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT1G45170.1	2.6e-51	53.4	unknown protein	[more]
AT5G42960.1	7.1e-49	50.2	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35284	FAMILY NOT NAMED	coord: 2..191 score: 4.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034765	regulation of ion transmembrane transport
cellular_component	GO:0034426	etioplast membrane
cellular_component	GO:0031359	integral component of chloroplast outer membrane
cellular_component	GO:0046930	pore complex
molecular_function	GO:0015288	porin activity
molecular_function	GO:0022843	voltage-gated cation channel activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24867	0.70	Barchart \| Table
Spo16694	0.67	Barchart \| Table
Spo24213	0.67	Barchart \| Table
Spo27285	0.67	Barchart \| Table
Spo00580	0.66	Barchart \| Table
Spo26994	0.66	Barchart \| Table