Spo06537.1 (mRNA)

Overview
NameSpo06537.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00574 : 119128 .. 119899 (+)
Sequence length435
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGGCAACACAATCTGCTGCCGAAAAAGCGGTTCGTAAACTACAAGAAAACTTAAACTTTGATGTGGCCGACATTAATTACACTACATGTATGCATCAAAGAAAGAAGCGCCGTATTGCTGAAATTAAGTTGACCAAAGAAGAGATGAATTTTCTTGATTTAAAGCGCTACTACTTTCAAGAATGTGCTGAAAATAGATCACTAAAAGAACAACTGGCCAAATTGCTAAATAGGGATAACAAAGGATCTGGGTAGAGTATGTTAAGGGTGATTAAACGAGTCATATGACTCTCATGTTGTAAGACTGAGGAAATAATAGACTTCACAAGTCTTTTTTTAAAAATGTGGATTGCTGTATTTTTATTTTCATTACTTCTTATTATCGTTTGTTGACCTAATAACATATTACATATCCATGTAAAAAAAAGGCACCCAAAAAGATGAAGAACCTAAACTATAAACAATTTTAAAAAATTCAATACAAGTAAAGTATATTAGGAGCATTTAAAAATTTTAAACTTTTGGCATTACTATGTTATCTTTAATTCCCATGGTCCAGCTTTACAGTTTAAAAAATTGACATTTTAGAAGGATGGAGAATGGGGACAGGGCAAGACATGCTCGATTCTTAAGGAAATGTATTATTACACAAAGGAGGAATAGACTAAAGGAACTTCCAAAAAAAAAACGGGAAACACTACCAGCAAGTGAGTCAACAAGGAATAATGGTAAGAAGTTATTAATATTTAAAATGCATTACCTATAA

mRNA sequence

ATGGCAAAGGCAACACAATCTGCTGCCGAAAAAGCGGTTCGTAAACTACAAGAAAACTTAAACTTTGATGTGGCCGACATTAATTACACTACATGTATGCATCAAAGAAAGAAGCGCCGTATTGCTGAAATTAAGTTGACCAAAGAAGAGATGAATTTTCTTGATTTAAAGCGCTACTACTTTCAAGAATGTGCTGAAAATAGATCACTAAAAGAACAACTGGCCAAATTGCTAAATAGGGATAACAAAGGATCTGGAAGGATGGAGAATGGGGACAGGGCAAGACATGCTCGATTCTTAAGGAAATGTATTATTACACAAAGGAGGAATAGACTAAAGGAACTTCCAAAAAAAAAACGGGAAACACTACCAGCAAGTGAGTCAACAAGGAATAATGGTAAGAAGTTATTAATATTTAAAATGCATTACCTATAA

Coding sequence (CDS)

ATGGCAAAGGCAACACAATCTGCTGCCGAAAAAGCGGTTCGTAAACTACAAGAAAACTTAAACTTTGATGTGGCCGACATTAATTACACTACATGTATGCATCAAAGAAAGAAGCGCCGTATTGCTGAAATTAAGTTGACCAAAGAAGAGATGAATTTTCTTGATTTAAAGCGCTACTACTTTCAAGAATGTGCTGAAAATAGATCACTAAAAGAACAACTGGCCAAATTGCTAAATAGGGATAACAAAGGATCTGGAAGGATGGAGAATGGGGACAGGGCAAGACATGCTCGATTCTTAAGGAAATGTATTATTACACAAAGGAGGAATAGACTAAAGGAACTTCCAAAAAAAAAACGGGAAACACTACCAGCAAGTGAGTCAACAAGGAATAATGGTAAGAAGTTATTAATATTTAAAATGCATTACCTATAA

Protein sequence

MAKATQSAAEKAVRKLQENLNFDVADINYTTCMHQRKKRRIAEIKLTKEEMNFLDLKRYYFQECAENRSLKEQLAKLLNRDNKGSGRMENGDRARHARFLRKCIITQRRNRLKELPKKKRETLPASESTRNNGKKLLIFKMHYL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo06537Spo06537gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo06537.1Spo06537.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06537.1.exon.1Spo06537.1.exon.1exon
Spo06537.1.exon.2Spo06537.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06537.1.CDS.1Spo06537.1.CDS.1CDS
Spo06537.1.CDS.2Spo06537.1.CDS.2CDS


Homology
[Close]
BLAST of Spo06537.1 vs. NCBI nr
Match: gi|902230534|gb|KNA21892.1| (hypothetical protein SOVF_039160 [Spinacia oleracea])

HSP 1 Score: 163.7 bits (413), Expect = 2.400e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1 

		  

Query: 1   MAKATQSAAEKAVRKLQENLNFDVADINYTTCMHQRKKRRIAEIKLTKEEMNFLDLKRYY 60
           MAKATQSAAEKAVRKLQEN NFDVADINYTTCMHQRKKRRIAEIKLT+EEMNF+DLKRYY
Sbjct: 65  MAKATQSAAEKAVRKLQENFNFDVADINYTTCMHQRKKRRIAEIKLTREEMNFIDLKRYY 124

Query: 61  FQECAENRSLKEQLAKLLNRDNKGSG 87
           FQECAENRSLKEQL KLLNRDNKGSG
Sbjct: 125 FQECAENRSLKEQLVKLLNRDNKGSG 150
[Close]
BLAST of Spo06537.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSU0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_039160 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.700e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1 

		  

Query: 1   MAKATQSAAEKAVRKLQENLNFDVADINYTTCMHQRKKRRIAEIKLTKEEMNFLDLKRYY 60
           MAKATQSAAEKAVRKLQEN NFDVADINYTTCMHQRKKRRIAEIKLT+EEMNF+DLKRYY
Sbjct: 65  MAKATQSAAEKAVRKLQENFNFDVADINYTTCMHQRKKRRIAEIKLTREEMNFIDLKRYY 124

Query: 61  FQECAENRSLKEQLAKLLNRDNKGSG 87
           FQECAENRSLKEQL KLLNRDNKGSG
Sbjct: 125 FQECAENRSLKEQLVKLLNRDNKGSG 150
The following BLAST results are available for this feature:
BLAST of Spo06537.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902230534|gb|KNA21892.1|2.4e-3795.3hypothetical protein SOVF_0391... [more]
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BLAST of Spo06537.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RSU0_SPIOL1.7e-3795.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo06537.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06537.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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