Spo11751 (gene) | SpinachBase

Overview


Name	Spo11751
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 57585601 .. 57589164 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCACCTGAATCAGTAATTTTAGGGAAATTGCGATGCATAATCATAACATTTTTGGTAAACAAGATCACACAAAAGAAAATCTACAGCCTGTGTCCTTGGCTAACAGTCTAACACACCCTGTCCAATATAACCTTCCAAAAATATAAATTATTCAAATATTTTTTTAATTTTTTTTTTCTTTTAAAAAAAAAGGTAGGCTTAGCTGGCGGTTGTCTATATATTAACAACCTTATTCAACGCCGCAGAATGATTGTCGGAGCAGCAAATTAAAAACCTTGGTTTTTGGTTTTCTATAAAAACTAGTTTGTTTTCACTTTTCTCGTTGCATTCTCCTTTTATTTTCTATATTTTTGATTTCCTATTAAGCCCTCCCTTTTCCTCTCTCTCTCCTAACAAGAGTTTTTGAATAAAGCTTTTGAAAGGAAGGAAGAGAAAGGGATAAAAGAGTAAAATCATAAATAGAAATGGGAAACTGCGCGAACAAGCCGTTGACAACAGAAGGAGATGCCCCCGCAGAGGCACCGGAGCAGAAGGTAGCCGTAGAGGAGAGAGAAATTGAAGTTGATCAAAACAAGGTTCCTTCTCTCGCTCAAATGTTGGAGGTCATTCATTTTATTATTACAGTACTATTTTATTTTATTTTTTTCATTGGAGGTAATCATGGGTTTTAATTTGCTTTTGGATACATAATTATGAAAATTATACTCGAATTAAAAAGAATTTAAAATTTTACGTAGCCTTTCCTTAAAAAACAACACGCGATTTATGATAATATTTTTTAAAACAATACTTAAATGTAGCCGTTATGTAATGTGTCGCTCAATATATGGTAGGAATGCATATTCGGATATTTAATCGTTTATTTGAAACATCTCAAAATTACTCCAGTGATTCTTTAAACATGTGACTATTAATTTCGGATAGAGGAATATATTTTCTTTGTACGATTTTTATTTTTGTTTTTAGGATGTCTGGAATAATTTGTAGACCCCGTTAAAAAAATACTAATAATTACTACTTTCAAAAACAAAAAATAAAATAAAAAATTTAAACATACCAAAACCCATCTTAACCTAAATTTTGAATTTTGGAGTTATTGAATGCTCGAATATATTGTACGGAGTAAAAATAAGAAAGAGTTCGAGGCCTAATCCGAAAAAATCACAATTGACAAGTCTAGTATGAGAAGTAGTTCATTTTCAGATGATATATTTTTGACATGTTAGTTTTACAATTTTGAAACGTAATTGTAGATGTTGAGTTGGTTGACGTGTTATCTTACAATTAATGGATAGACAAACTTATAAATATAAATAAGTAGTAATCCGTATGGAAAAATTAGCAATACAATATTATCATCAACCAACACCATCATACTATCAATTATTGCAGCATTTTTTGCTCAATGAAAATAATACTTTTTATTAAATAAACGTTACTTCGTAGCACTCTGTTAACACCTTGTTAGTTAAAGTAGATAGTAAAAGTTATGCCTCAAAGTCTCAAACCACGTAGTAGGGTTCACGAGAGTGATGGATAGCTCAGTTGATTAGAGCTTCCATTCCGGTTCCAGGTGATATTGGGATCGATTCTCATCCCCGCCCTTGTGGCTTATCCGCACCAAAAAAAGAAAAGAAAAAACACGTAGTAGGGTTCATAACGAGGAATCATCTCCTTAATTAAGTTCCGTTAATTAGTACTTCCTAGTTAGTAAACATTATAATTGTCGATTTTGAGTGTTGTCCTTTCTTATTTCTTTCACAGCTGTTCTTGGGACCGGCCATTTGTTGATTGTTCATCACAAATCATAAGTCCATCTTTTCCTTATGTGGCCAATCTTAGCGCATGTTAAGGGGAAAAAAACACCATAATAAGTCTAAGTGAATGCCTTCTATTCAATTGTCCTTACCTTTTCATGTCTTTGTATTCCTTGCAACATTAGTTTGTCTTCTAGACGGTTTCCTCTATTCTCTTGTCTGTAAAGATCCTTGTGGGTCGTGCTTCGTGCCAAACCCGCGTGCCATGAGTTTTAATGGGTCCAGTCCACGCCAAGCCACTTGTTTATTGTCGGGCCAAAAGTTTCTAAAGGGTCGCTTAGGTGCGGCTCAATCTCATGTGTCATCCTGTCGGACTTTGGTGTCTAAGCCCAATTTCGCTCAATCATTTAACGTGCTTCGTCATTTCAGGCCTTGCATTTTCCAAAAAAGTGTCATGGGCTCAGCCCATGTCGTCCCTTGGGCTGGGCTGCCGCACTGCCAAATTATTATTATTAACCCCTTAAATTTTTTTTTGTTTGTGCGAATTACGAAGTAGCTATTAGAGCAATATATAAAAATTACAAACGGAAGAGTGTGAATTCGAACCGAGACACATCGTACACAAGCATTAAGGCTAACCATTAGGCCAATATTCCAATGGTGCCTTTGATTGTTTGTGATATTTTTACCTTTGCCCCTACATGTGTATGTCTTGTATAGAGACCTGCATGGTTAAATCCCGTACACATCATATAGACATGTCTACAAAAAATAAAATGAAATTATGCAACGCTCAACCTTAATTATTAATCTAATGTATATTACTTGGGGGTGTCACTTATTCGTTCATGCATGTAATGGCTATATGAAATGATTGTATTTGGACGAAGTTGTTGAAGTGAACATGTGTGCATGACATCCTGATTTTGCTCATGTTTTCTTCATTATTCTGTTAGTCAACCAAATTGTTATTTTTTTGAAATAATTTCTGAAAACATATATTCTTTGAAATCTGTTTGTTTGCAGGATGATGGAAAGAAGCCGGAAGCTGAGGGAGTCGCAAAGCCAGCCGAGGAGAAGAAGCCCTCAGAGACACCAATTAAGGTTGAAGAAGTAGCCAAAGAAGTGGCTGTCGAGACCAAGAAAGAAGATGTTTCAAAGCCGGCAGCCTCTGAGCCGCCTAAGCCAGAAGCCTCTGCGCCGAAGAAAGAAGAGACTAAGCCAGTTGTGGTTCCAGCCCCGGCTCCAGCCCCGGCTCCAGCCACAGCTGAGAAGAAAGTGGAAGAGAAGAAATCTGAGACTAAATGAAGATAATATTAAATGGTTATTCTTCTTTAAAACAAAAGAAAATTGAGGGGATAAAAAATAACACAAAAGAAATTTATTTTATTAATATAATTAAGTTTGTGATTGGATAGAATTATTTATTAATTGAAGAATTAGTTGATTTGGGATTTTGTTTAAATGGATATATATATATATATATATAATATATATATATATATATATATATATATATATATATATATATAATTGTATGGGGGGAGAGAGTGGGTTTCATGATTTGTGTTTTCGTAGATTGATTGTGTTTATGTATTTTTTCTTCTTTTGTGTTTTTGTTCTTTTGCTTTTGTAAACATCTGGGTTTTGTTGGATTGTTCAAACTTCAAATTAATATCGAATTGCTTTTATTAATTTAATTAATATTTTGTTGATTCAATCTTAAGGCCCTGTTCTTCTGAACTATGTTTGGCTGAACTGAACTGAATGGAACTAAATAAATAGTACATAAATAAATAATAAA

mRNA sequence

CTCTCACCTGAATCAGTAATTTTAGGGAAATTGCGATGCATAATCATAACATTTTTGGTAAACAAGATCACACAAAAGAAAATCTACAGCCTGTGTCCTTGGCTAACAGTCTAACACACCCTGTCCAATATAACCTTCCAAAAATATAAATTATTCAAATATTTTTTTAATTTTTTTTTTCTTTTAAAAAAAAAGGTAGGCTTAGCTGGCGGTTGTCTATATATTAACAACCTTATTCAACGCCGCAGAATGATTGTCGGAGCAGCAAATTAAAAACCTTGGTTTTTGGTTTTCTATAAAAACTAGTTTGTTTTCACTTTTCTCGTTGCATTCTCCTTTTATTTTCTATATTTTTGATTTCCTATTAAGCCCTCCCTTTTCCTCTCTCTCTCCTAACAAGAGTTTTTGAATAAAGCTTTTGAAAGGAAGGAAGAGAAAGGGATAAAAGAGTAAAATCATAAATAGAAATGGGAAACTGCGCGAACAAGCCGTTGACAACAGAAGGAGATGCCCCCGCAGAGGCACCGGAGCAGAAGGTAGCCGTAGAGGAGAGAGAAATTGAAGTTGATCAAAACAAGGTTCCTTCTCTCGCTCAAATGTTGGAGGATGATGGAAAGAAGCCGGAAGCTGAGGGAGTCGCAAAGCCAGCCGAGGAGAAGAAGCCCTCAGAGACACCAATTAAGGTTGAAGAAGTAGCCAAAGAAGTGGCTGTCGAGACCAAGAAAGAAGATGTTTCAAAGCCGGCAGCCTCTGAGCCGCCTAAGCCAGAAGCCTCTGCGCCGAAGAAAGAAGAGACTAAGCCAGTTGTGGTTCCAGCCCCGGCTCCAGCCCCGGCTCCAGCCACAGCTGAGAAGAAAGTGGAAGAGAAGAAATCTGAGACTAAATGAAGATAATATTAAATGGTTATTCTTCTTTAAAACAAAAGAAAATTGAGGGGATAAAAAATAACACAAAAGAAATTTATTTTATTAATATAATTAAGTTTGTGATTGGATAGAATTATTTATTAATTGAAGAATTAGTTGATTTGGGATTTTGTTTAAATGGATATATATATATATATATATAATATATATATATATATATATATATATATATATATATATATATAATTGTATGGGGGGAGAGAGTGGGTTTCATGATTTGTGTTTTCGTAGATTGATTGTGTTTATGTATTTTTTCTTCTTTTGTGTTTTTGTTCTTTTGCTTTTGTAAACATCTGGGTTTTGTTGGATTGTTCAAACTTCAAATTAATATCGAATTGCTTTTATTAATTTAATTAATATTTTGTTGATTCAATCTTAAGGCCCTGTTCTTCTGAACTATGTTTGGCTGAACTGAACTGAATGGAACTAAATAAATAGTACATAAATAAATAATAAA

Coding sequence (CDS)

ATGGGAAACTGCGCGAACAAGCCGTTGACAACAGAAGGAGATGCCCCCGCAGAGGCACCGGAGCAGAAGGTAGCCGTAGAGGAGAGAGAAATTGAAGTTGATCAAAACAAGGTTCCTTCTCTCGCTCAAATGTTGGAGGATGATGGAAAGAAGCCGGAAGCTGAGGGAGTCGCAAAGCCAGCCGAGGAGAAGAAGCCCTCAGAGACACCAATTAAGGTTGAAGAAGTAGCCAAAGAAGTGGCTGTCGAGACCAAGAAAGAAGATGTTTCAAAGCCGGCAGCCTCTGAGCCGCCTAAGCCAGAAGCCTCTGCGCCGAAGAAAGAAGAGACTAAGCCAGTTGTGGTTCCAGCCCCGGCTCCAGCCCCGGCTCCAGCCACAGCTGAGAAGAAAGTGGAAGAGAAGAAATCTGAGACTAAATGA

Protein sequence

MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVPSLAQMLEDDGKKPEAEGVAKPAEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEETKPVVVPAPAPAPAPATAEKKVEEKKSETK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11751.1	Spo11751.1	mRNA

Homology

[Close]

BLAST of Spo11751.1 vs. NCBI nr
Match: gi|731338361|ref|XP_010680287.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 130.2 bits (326), Expect = 2.800e-27
Identity = 94/160 (58.75%), Postives = 101/160 (63.12%), Query Frame = 1

		  
Query: 1   MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVP-----------SLAQMLEDDG 60
           MGNC  KPLTTE +    APEQK  VEEREIEVDQNKV            SLA+MLED+G
Sbjct: 1   MGNCGLKPLTTEAEE-VPAPEQKTTVEEREIEVDQNKVIDAVHHQSKAPLSLAEMLEDEG 60

Query: 61  KKPEAEGVAKPAEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEE 120
           KKPEAEG  KPAE  KP E P+K+EEVAKEVAVETKKE+  KP   EPPKPEASAPK  E
Sbjct: 61  KKPEAEGAEKPAEVAKPIE-PVKIEEVAKEVAVETKKEEAPKPVV-EPPKPEASAPKPAE 120

Query: 121 TKPVVV-------------------PAPAPAPAPATAEKK 131
           TKP V+                   PA  PA  P TAEKK
Sbjct: 121 TKPAVIAPAVEITKPAITPAVEITKPAVTPAAVPVTAEKK 157

[Close]

BLAST of Spo11751.1 vs. NCBI nr
Match: gi|731338363|ref|XP_010680288.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 119.8 bits (299), Expect = 3.800e-24
Identity = 87/149 (58.39%), Postives = 93/149 (62.42%), Query Frame = 1

		  
Query: 1   MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVPSLAQMLEDDGKKPEAEGVAKP 60
           MGNC  KPLTTE +    APEQK  VEEREIEVDQNK         D+GKKPEAEG  KP
Sbjct: 1   MGNCGLKPLTTEAEE-VPAPEQKTTVEEREIEVDQNK---------DEGKKPEAEGAEKP 60

Query: 61  AEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEETKPVVV----- 120
           AE  KP E P+K+EEVAKEVAVETKKE+  KP   EPPKPEASAPK  ETKP V+     
Sbjct: 61  AEVAKPIE-PVKIEEVAKEVAVETKKEEAPKPVV-EPPKPEASAPKPAETKPAVIAPAVE 120

Query: 121 --------------PAPAPAPAPATAEKK 131
                         PA  PA  P TAEKK
Sbjct: 121 ITKPAITPAVEITKPAVTPAAVPVTAEKK 137

[Close]

BLAST of Spo11751.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CB30_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g133290 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.000e-27
Identity = 94/160 (58.75%), Postives = 101/160 (63.12%), Query Frame = 1

		  
Query: 1   MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVP-----------SLAQMLEDDG 60
           MGNC  KPLTTE +    APEQK  VEEREIEVDQNKV            SLA+MLED+G
Sbjct: 1   MGNCGLKPLTTEAEE-VPAPEQKTTVEEREIEVDQNKVIDAVHHQSKAPLSLAEMLEDEG 60

Query: 61  KKPEAEGVAKPAEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEE 120
           KKPEAEG  KPAE  KP E P+K+EEVAKEVAVETKKE+  KP   EPPKPEASAPK  E
Sbjct: 61  KKPEAEGAEKPAEVAKPIE-PVKIEEVAKEVAVETKKEEAPKPVV-EPPKPEASAPKPAE 120

Query: 121 TKPVVV-------------------PAPAPAPAPATAEKK 131
           TKP V+                   PA  PA  P TAEKK
Sbjct: 121 TKPAVIAPAVEITKPAITPAVEITKPAVTPAAVPVTAEKK 157

[Close]

BLAST of Spo11751.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C6N2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g133290 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.700e-24
Identity = 87/149 (58.39%), Postives = 93/149 (62.42%), Query Frame = 1

		  
Query: 1   MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVPSLAQMLEDDGKKPEAEGVAKP 60
           MGNC  KPLTTE +    APEQK  VEEREIEVDQNK         D+GKKPEAEG  KP
Sbjct: 1   MGNCGLKPLTTEAEE-VPAPEQKTTVEEREIEVDQNK---------DEGKKPEAEGAEKP 60

Query: 61  AEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEETKPVVV----- 120
           AE  KP E P+K+EEVAKEVAVETKKE+  KP   EPPKPEASAPK  ETKP V+     
Sbjct: 61  AEVAKPIE-PVKIEEVAKEVAVETKKEEAPKPVV-EPPKPEASAPKPAETKPAVIAPAVE 120

Query: 121 --------------PAPAPAPAPATAEKK 131
                         PA  PA  P TAEKK
Sbjct: 121 ITKPAITPAVEITKPAVTPAAVPVTAEKK 137

The following BLAST results are available for this feature:

BLAST of Spo11751.1 vs. NCBI nr
BLAST of Spo11751.1 vs. UniProtKB/TrEMBL
BLAST of Spo11751.1 vs. ExPASy Swiss-Prot
BLAST of Spo11751.1 vs. TAIR (Arabidopsis)

BLAST of Spo11751.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|731338361\|ref\|XP_010680287.1\|	2.8e-27	58.7	PREDICTED: pollen-specific leu...	[more]
gi\|731338363\|ref\|XP_010680288.1\|	3.8e-24	58.3	PREDICTED: pollen-specific leu...	[more]

BLAST of Spo11751.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0J8CB30_BETVU	2.0e-27	58.7	Uncharacterized protein OS=Bet...	[more]
A0A0J8C6N2_BETVU	2.7e-24	58.3	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo11751.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo11751.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006508	proteolysis
biological_process	GO:0016197	endosomal transport
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0005198	structural molecule activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo20632	0.74	Barchart \| Table
Spo22955	0.73	Barchart \| Table
Spo17940	0.72	Barchart \| Table
Spo22714	0.71	Barchart \| Table
Spo05093	0.69	Barchart \| Table
Spo07236	0.69	Barchart \| Table
Spo12962	0.69	Barchart \| Table
Spo28265	0.68	Barchart \| Table
Spo09499	0.68	Barchart \| Table
Spo17318	0.68	Barchart \| Table
Spo14212	0.67	Barchart \| Table
Spo10864	0.66	Barchart \| Table
Spo09009	0.66	Barchart \| Table
Spo25614	0.66	Barchart \| Table
Spo26858	0.66	Barchart \| Table
Spo19690	0.66	Barchart \| Table
Spo09993	0.66	Barchart \| Table
Spo10725	0.65	Barchart \| Table
Spo09824	0.65	Barchart \| Table
Spo07557	0.65	Barchart \| Table