Spo24797 (gene)

Overview
NameSpo24797
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 91210804 .. 91211810 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCAGGAAATCAAGGTTATAATGGTATTGAAGTAGAGGGGAAGGAAATAAAACGATTAGTACAGATTGTGATATATTATTTGGAGGGTCAAGATTCATCCAAATCAATGGTGAAGATGAAGGTTCTCACCATAAGAAAAAATCTCGCCGTAAGGTGGTTCTCATGTGAACCTATATATATATATATATATATATATATATTAGACTAAAATTATTATTACTTTTCGTATTATCGAAACAAAAAGTGAATTAAAATATTTTTCATTTTTTTAAGTAAATTAGGATTCCCCTCATAAAAAAGGAAAAAAATTGAAGTTTTTTTTTTTTTTTTGAAAGATAAGAAAAACTACCGAAAAAAAAATTTAAGAAAAAAAGTGAATTAGGATAAAGTTGTATTGCCAAAATAAAAGGATAAAGGATAAATATTTATTCTCCCTCAAAAACGAAAAGAAAGATTCAATGAACCAGTAACCACCTAAGCTTCCTAGTTTCCTCCTTCTACACAACTTCGTTCTCCCTCTTATATAATGGCGTAATTCCCCAATTTCGCCCTCTTTCTGGAGAGAGATTGGCGTCTAACACACGATTTCTGAAATTTTCAGCGAACCCCAAATTTCTTCCTTCATTTTGTATCGTCAAATCTCAGGTACCCAACTGCTCCTTTCTTTGTTGAATTTCTCTCTTATCCTAAGTTTCTTGATCAAGTAATTTTTTAGGCTTCTCAATCTTTCTTGATGGTATCATAGATTAGTAAGGTGTTAATTTTGGTTCTTTATGGTACAACTTTAACCTGATAAGATCATGTTTTGATTTTGAATTTCCAATTCAATTAAACCTAATCATGGTTTTTCAGTTGATTTTTTTTGTCAATGATTGATTTCGTTAATCAAATTGCTATTTACTCCGTCTGTTATAAACTTCGAATTTGAATATCATTAGGTCGTTTAATTGCCATTTAATTATGGGTTTTCATTGTTTTTAGTTGCAGGGAATTATTCTGTAA

mRNA sequence

ATGGAGGCAGGAAATCAAGGTTATAATGGTATTGAAGTAGAGGGGAAGGAAATAAAACGATTAGTACAGATTGTGATATATTATTTGGAGGGTCAAGATTCATCCAAATCAATGGTGAAGATGAAGGTTCTCACCATAAGAAAAAATCTCGCCGTAAGTAACCACCTAAGCTTCCTAGTTTCCTCCTTCTACACAACTTCGTTCTCCCTCTTATATAATGGCGTAATTCCCCAATTTCGCCCTCTTTCTGGAGAGAGATTGGCGTCTAACACACGATTTCTGAAATTTTCAGCGAACCCCAAATTTCTTCCTTCATTTTGTATCGTCAAATCTCAGTTGCAGGGAATTATTCTGTAA

Coding sequence (CDS)

ATGGAGGCAGGAAATCAAGGTTATAATGGTATTGAAGTAGAGGGGAAGGAAATAAAACGATTAGTACAGATTGTGATATATTATTTGGAGGGTCAAGATTCATCCAAATCAATGGTGAAGATGAAGGTTCTCACCATAAGAAAAAATCTCGCCGTAAGTAACCACCTAAGCTTCCTAGTTTCCTCCTTCTACACAACTTCGTTCTCCCTCTTATATAATGGCGTAATTCCCCAATTTCGCCCTCTTTCTGGAGAGAGATTGGCGTCTAACACACGATTTCTGAAATTTTCAGCGAACCCCAAATTTCTTCCTTCATTTTGTATCGTCAAATCTCAGTTGCAGGGAATTATTCTGTAA

Protein sequence

MEAGNQGYNGIEVEGKEIKRLVQIVIYYLEGQDSSKSMVKMKVLTIRKNLAVSNHLSFLVSSFYTTSFSLLYNGVIPQFRPLSGERLASNTRFLKFSANPKFLPSFCIVKSQLQGIIL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24797.1Spo24797.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo24797.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24797.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24797.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24797.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:0010015 root morphogenesis
biological_process GO:0048481 plant ovule development
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0008361 regulation of cell size
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0007389 pattern specification process
biological_process GO:0009926 auxin polar transport
biological_process GO:0048653 anther development
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0044424 intracellular part
cellular_component GO:0005840 ribosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009507 chloroplast
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo012240.71Barchart | Table
Spo156190.70Barchart | Table
Spo152440.69Barchart | Table
Spo114780.66Barchart | Table
Spo094600.65Barchart | Table
Spo163920.65Barchart | Table