Spo15626 (gene)

Overview
NameSpo15626
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 6848356 .. 6849577 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGTGGTCAAAAGGCCATGAAGGACAAGAGACAATCGGCATTTTACTTCCAAATTGGAGTTCTTGCTGATCAAAAGGGTCAAGTCCCCGCCGAATTATATACGGACTGCGATAAATATACAAGCATTGATGTTGGGTATCAAGGAGATTACTGGGGTCGTCTTATATTTTATGGAGGTCCATATAAGGAAATCGAGTAACATGTATTGTATCATTACTCCGATCCATAATTGTGGTAACTCTTTGTTTTATTGTAATCGAGCAGCACATTAATACACAAAAATGCTACATAATTTTGTTATAAGCATGGAGTAAAATTTATAATGAGTAGTAGTACTACATATAATTGAATTAGGTACAAATTACATTTTACCCTAGCCTCAATTAATACTTTTAAGGGACTTCTATCAATTTTTACCGTGAAAATCCCCAATTGCTTTATTTTCTTGTGTTCTATCCTTTAATTTTGTTTTTGTAGGTCTTATAATGCTTCCTCCTCCGGAGAGGAATGTTTCTCCCTTGAAAATCAAGTTATTTCTTCTTTATTTTCGAAAGATTTTCTGCATTTGTGTTGGTATCGAGTCGAGGGGTGTTGTTTGTGTATTTCTTGGTGGAAATTGTGTTGTTTCTATGATGTATGCACTTTGAAGATCAAGATCAATCCGGAACATGGAGTAGCTTCAGTTTTCAAGATGAATATAACGTTTGTAACGAGGTCCTCCATACAACCAAAAAATGCTTGGACGTCGAAATTATTTCATGGTTAAACAAATACCATGATATCAGAGCCGTTCTTCGGTGTTTGCTCATTTAGTTATTTGGGAAAAAAAAACTTGTTCTTGATTAGGGAAAATTTGATGATAGATGTCGTATGACTTTATTTTAATGAAATTTTTCCTTACTCGTAAAAAAGTCAAAAAAATACATTAGAAAACCTGCCGTTCGAGGATAACTCCTAAGTAACCACATACTGTTTATAATCAAAAGTAATTCCTGACTACATATTACAAGGCTGGATATGCATAGAATATGTAACAAGATGTCCTACATTATCCAATCTGACGCTCAGTTTGCTTCTCGATAGATATATTGAATATGAAACGTTGAAAAATGATTACAAGTAACATCATACACAAACCTTATCGTACAAATATAAACGGGAGAGAAGAATTCAAACATTTGACCTATCGTATACAAGCCTCAAGTTTTTACCACTAG

mRNA sequence

ATGGGTAGTGGTCAAAAGGCCATGAAGGACAAGAGACAATCGGCATTTTACTTCCAAATTGGAGTTCTTGCTGATCAAAAGGGTCAAGTCCCCGCCGAATTATATACGGACTGCGATAAATATACAAGCATTGATGTTGGTAACATCATACACAAACCTTATCGTACAAATATAAACGGGAGAGAAGAATTCAAACATTTGACCTATCGTATACAAGCCTCAAGTTTTTACCACTAG

Coding sequence (CDS)

ATGGGTAGTGGTCAAAAGGCCATGAAGGACAAGAGACAATCGGCATTTTACTTCCAAATTGGAGTTCTTGCTGATCAAAAGGGTCAAGTCCCCGCCGAATTATATACGGACTGCGATAAATATACAAGCATTGATGTTGGTAACATCATACACAAACCTTATCGTACAAATATAAACGGGAGAGAAGAATTCAAACATTTGACCTATCGTATACAAGCCTCAAGTTTTTACCACTAG

Protein sequence

MGSGQKAMKDKRQSAFYFQIGVLADQKGQVPAELYTDCDKYTSIDVGNIIHKPYRTNINGREEFKHLTYRIQASSFYH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15626.1Spo15626.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo15626.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15626.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15626.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15626.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0009902 chloroplast relocation
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0042793 plastid transcription
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0006783 heme biosynthetic process
biological_process GO:0042742 defense response to bacterium
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0048868 pollen tube development
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006449 regulation of translational termination
cellular_component GO:0018444 translation release factor complex
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005634 nucleus
cellular_component GO:0005615 extracellular space
cellular_component GO:0005773 vacuole
molecular_function GO:0003747 translation release factor activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0008289 lipid binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo033100.73Barchart | Table
Spo072350.72Barchart | Table
Spo026490.68Barchart | Table
Spo170060.68Barchart | Table
Spo035230.67Barchart | Table
Spo135070.66Barchart | Table