Spo06752.1 (mRNA) | SpinachBase

Overview


Name	Spo06752.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	vacuolar protein sorting-associated protein 20.2
Location	SpoScf_00619 : 205921 .. 216587 (-)
Sequence length	1047

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGCTAACCTTTTTTTGGGAAAGAAAGATAAATTTTTAGCCTAGAGGTCGCTGTGGCCTGTGGTGGTCTTGCTTTCTCCTTTTCTTACTCGCATCCAGCGCGCAACCTTATTCTCCCCTCTTGCCTGTTACCGGCCACTAGACAGACCCAACCCNCCCCCCCTACCACCGCAACCACTACAACCACCGTGCATCGAATTCCTGTTGCAGATTTCTCCGGCCACCGCCGTGCAACAATTGCGAACCACCGCGATAAAAGTGATAAAGATTATTGGGCAAAAAAAGCTCTTTAAGCTTACATAGTTTTCTCTCAAATTGAATTGGGGAGTGTTTAAATACAGATGGGTAACATTTTTGTGAAGAAACCCAAGATCACTGAGGTTGATCGTGCAATTCTCTCTCTTAAAACTCAGAGACGCAAACTAGGTCAATATCAGCAACAGGTAACTCAATTCTTGCCCCCTTTTCCCACTCTTTTGGGAATTTTGTTTTCTGGGTAACATTTCAAATCTTTTGTATTTTTCTGGGTCATCATTAAAAAGCCGGATTTTATTGATGATTTTTTTTTTCTTCTGCTGATCTGATTGTCTTTGATTTTGATTTGATTATATATTTGGTTTTATACTATGCATATAAAAGTAAACACTCATAAGCTAGACTGTTGAATTTTTGGATTTTGACTCATAAGGGATGTTTAGCTGTATTATCCTCCTCCGTTCAGGTTATGCATTGGAGTGCTTAGGTATGAAATTTTATTCGGGTTTCGTGTTCAATTTCGGTAGGTAATGTAGAAAGGGTTTTGTGCTGATATTTTAGTTAGTGAAATAATTGGTTGATTTGATCAAGTGATGGGGTAAGTTGCAAATGAGTCCAATAATTGTTATTGTTTGATCACAACTTTGAAATATGGGGTTGTCTTGATTTGGGTGTTTATCTATAAACCTATGGACAATGGTTAGGGAGGTGGCTTTGGTGGGGAGTAGCTCAATATACTGAAAATCGGTCTTAGCTGCTCGTTTCGCCATCCGAAATATTTGACTTGCATTGGGTTGGGTAAAGGTAAATGCTGTCAATGTTAATTTATATTTACAGAGTTTGTGTAATTTGGTGTTTAGTTTTGATGGTTATGGCATCTGCTATATCTGTTTTTAGCTTTAATTGATAGGATGAAATGGACGATTGTAACTGGCTAGAAGGTTATGTTGTGGGTGGAGTTGTTGAAGAGTTACTGAACAAATGTTCTTTTTGAAAAGGATGTTGGTACAGTTGTGTTAGATTGCTTGCTTTTAAAGAGCCTTGAAGACCATGACATAGTATAGCAACTTGAAAGACGATACCATATCCTTCAAACTGAAGGAATGTATAGTGTTTTGATGCTTCACTTTCTTATTTATGACATTTCAACTGTGTAATCACCAATATGAAAGGAGGATTCATCTAAGGAGGTCTGCTGGTACTATCAAGTGCTTATAGTATCACTACCTGTTGAACTAATGAAAAAAGAGTTGGGAAAGAGTATAGGTGTTACTTATTTCACTTGTATGTGGTTGTTGGTTTGTATGTGATCTGATGTGTAACTGTTATTATCAGTATAATGATCAAATGCAATTACACCATGCGTGTAATATGATGCCCGAGAAAAGAAGCTGTAAATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTGGTAAGTAAGAAAGTTCATTAAAATCAAATGAGCACAATCACAATACAGATTACTTGAGGGGGAGAAAACCTTCTAGGAAGGGTACCTCCTACCTCAAGCCTCAAACATACAACATAGCAACATGCCTAAAACACTCATTTTACAAAGAATCAAACCAGTCCTTGTCGTGCTGAGGGATCTTCATCTTCTTACTCATTATACTTCATATCCTGGATCTCACAATCCCTTGAACCCTTTTAACCATGTTCATACTAGCCACCTTAAACTCCCATAAGGCTTCTTTTCTAGCACACCAAATGACATACACAATGGCAGCAACTGCAGCAGTAGCTAGGTGCTTCCAGAACTGAGACTTTTAGTTCTCTTGTTTATCCATCAAAGAAGAACGAAGAAGCCAGTAGTATCAGTTCTAATCTGCAACCAACCTTTAATTTGTTGTATTCGTTGCTTGCTGTATTCATAGTAAAAAATAGGTGCTTGTGTGACTCCACCTCCTTATTGCAGATAGCCAGATAGTACATAGATCAGAGTTACTAATGTGAAGGTGGTGCAACCTTTGTCTTGTCTGCAACCTCCCAAGCATAGCCAACCACAGTATGAACCGGTGTTTAGGTATAGAAAATCTGCACCATACCATTTTACACGATTGTAATTTTTGCCCCTGCCTATTTAGCTCAGAGTATATGGTAACGCCAAGCTTAAATCATGCTTGCCTTACAAACACACTTCCAAGCTCAACTAGAGTTACTAGGAGTTTGGTTGTCCTTACAATGTAAATAGCACTGACCCATCTCACCCATAAGTTGTCACCTTTCTTCGCAATGTTCCACACTTGTTTACCCAAGCGTCTCTATTCTAAAGCATCACATTACAAATACCTAAACGACCAAATTTCTCAGCCTTACATAGGTTATCCCAGGCCACATACCCAGGCTTCGAAGTATTGTGATTCCCTGAATGATCTGCTCCTAGCATTTATCTTCTTGTAAACTGACTTAGGCAAAGTAAAAATTGGAGTCCACTAGACCACTACACATTAATACTCATCAACACTGAGTTAAGAAGTTGTAACCTTCCAGCAAAATAAAGGTGCCTAGAGCTCCAAACTTAAATCCTAGCCATCATTTTTTCCACCAAATTTTCACAATCAGCTGTTATTTTCTTTGTCCGAAAAGGCACTCCCAAATATTTGGAAGGAAGAGTATTCACCTTGAAACCAGAGATATCGAAAATGGCAACAACTTCATTCCGATTCAGGCCACAACTGTAAACTTATGACTTGTTCTTATTAGCACACAAACTTATGACTTGAAAGACGATACCAATCCTTCAAACTGAAGGAATGTATAGCGTTTTGATGCTCCGCTATCTTATGTATGTCATTTCAGTTGTGTAATCACCAATATGAAAAGAGGATTCATCTAAGGAGGTCTAACGAAAAAAAGAGTTGGGAAAAAGTATAGGTGTTACTTATTTCACTTGTATGTGGTTGTTGGTTTGTATGTGAGCTGGTGTGTAACTGTTATTATTGTTACAGGCTTAATGCTGATTGCTTCATGTATAAGAATTGATTGGTTAAATTCGTTTGAATTCTGGACATCATAAGACCTTCACTATAATGATCAAATGCAATTACACCATGCATGTAATATGATGCCCGAGAAAAAGAAGCTGTATATATATATATTTTTTCTTGGTAAGCAAGAAAGTTCATTAAAATCAAATGAGCACAATCACAATACAGAGTACTTGACGGGGAGAAAACCTTCTAGGAAGGATCCCTCCTACCTCAAGCCTCCAAAATACAACATAGTCAACATGCCTAACACTAAAATACTCATTTTACAAAAGACTTAAACCATTTCTTGTCGTGCTGAGGTATCTGCTTACTCATTACTTATCCTGGATCTCACCGTCCTTTCAACCCTTTTAATTACCGTGTTCACATTAGCCACCTTAAACTCCCATAAGGCTTCTTTTCTAGCACACCAATCACATACACAATGGTAGCAACTGCAGCAGTAGCTACGTGCTTCCAGAACTGAGACTTTTTAGTTCTCTTGTTTATCCATCGAAGAGGAACGAAGAAGTCAGTAGTATCAGCTCTAATCTGCAACCAACCTTTAATTTGTTGTATTCGTTGCTTGCTGTATGCACAGTAGAAAAATAGGTGCTTGTGAAACTCTACCTCCTTATTGCAGATTGTACATAGATCAGAGTTACTAATGTGAAGGTGGTGCAACCTTTGTCCTGTGTGCAACCTCCCAAGTTCATAGCCAACCACATTACGAACTGGTGTTTAGGTACAGGAAATCTGCACCACACCATTTTACACCATTGTAATCTTTGCCCGTGCCCATTTAGCTCAGAGTATATTGCAACGCCAAGCTTAAATCATGCTTAGCCTTACAAACACACTTCCAATGTCAACTAGAGTTATTAGGAGTTTGGTAGTCCTTCCATTGTAAATTGCATTGACCCATCTCACCCACAAGTGTCAGCTTTCCTCGCAGTGTTCCAGACTTGTGTTTCCCAAGGCGTCTCTATTCCAGAGCATCACATTCCAAATACCTAAACCACCAAATTTCCTAGCCTTACACAGGTTATCCCCGGCCACATACCCAAGCTTCGAAGTATTGTGATTCCCTGAATGATCTGTACACATCAACTGACTTTGGCAAAGTAAAAATTTAGTCCATTACACATTAATACTCATCAACACCGAATTAATAAGTTGTAACCTTCCAGCAAAAGAAAGGTGCCTAGAGCTCCAAAATTTAATCCTAGGATTCCTAGCCATCATTTTCCCACCAAATTTTAACAATCAGCTGCTGTTATTTTCTAACAGGCTCTCCCAATTTGGAAGGGAGAGTATCCACCTTGAAACCAGAGATATCGGAAATGGCAACAACTTCATTCTGATTCAGGCCACAACTGTAAACTCCTGACTTGTTCTTATTAGCACAAAAACCAGAGGTGTCAGAGAAAAGGTTAAGCCCTTGAAGAAACATATTTTTAGAAGTAGAATCCGTTACAAAATAAGATCAGATCGTCAGCAACACAAAGATGATTCAAATTTAGAGTCCTGCACTTAGAATGGTACTTGTACTGTTTTTGAGCACCTATATAAGCCATAGTCCTTAGGTACTCCATACACACCACAAAAAGCAAGGGAGACATCAAGTCTCCTTGCCTAAGCCCCCTCTTGGTCTGAAAAAAACCAGTCGGCACACCATTAATCATAAAGTGAAACTGGGGCTCTGAGCACAAGTCATTATTAACCTTGTGAAATAATCTGGAAAACCAAGCGCCGATGACATATCTTGCAAAGTTCCCCACTCAACCGTATCATATGCCATCTGGTTTTCTGACTCCTTCAATAGATCTTTACCAAGTCTTGGCAAACCAAGACGTTATAAAGAATACTTCTCCCTGTCACGAAGGCCCCTTGAGTATCAGAGATCACATAAGAAGCTGTATATTGATTATGATGCTTTAAGTCAGAATATGATGATCTTTCCAACCAATTTCAAGGAAAAATATGACTTATGCATTTCATATCCATTTGATTTTCCATTTCCTATTTGTCTGAAAGAGCTGTTGAAAGTGCAACATTGAGATTTGGCTAGTAAAATACTGGTACCCTATATATTAGTCAATTGGAATCTGCCTCCTTAAGCTTGATTTTTTGTGATAAAAAAAATAGTCAATATTCTGTTGGTTGTCTGTCCATTTTTTCCAGGGGGGGAAGAGGGAGGGGGGGNGGGGGGGGATATTCCACTCTTCTTTAAGAAAATGACAGAATAAATTGCTGTGAGATTAACTCTTCTTCAGTGAAGAAGTCTTTCTTGTGGGGGTGAGGGGTGTGTTTGTACTTTGGGTCTTTGGAACTCATATGGAGTTTTGTGAGTATAAGAGCTTCTTTCTGGTGAATGAGTTTGTTTAGGGATCTTAAATATTTTGTGTTACGTAACATGTACCCCGTATTTCGCTAAAACATGACTGGATGTACCTAAGAATGTCCAATTAGAAATTTCTAGTATACATGTCTTACACTGAAAAAAAATAAACAAGCGCCAATAACATTTCTTGCAAAAGTCCCCACTCAACCGTATCATATGCTATTTGGATATCTACATTTGAACCTACAACATCTGGTTTTCTGACTCCTTCAATAGATCTTTACCAAGTTATGTCAAATCAAGACGTTATGCAGAATACTTCTCCCTGACCCCTTGAGTATCGGAGATCACATCAGAAGCTGTATTATTATTGTGATGCTTGAAGTCAGAATGTGATGATCTTTCCAACTAATTTCAAGGGAAGATATGACTTACGCATCTTCATATCCATTTGATTTTCCATTTCCTATTTGTCTGGAAAGAGCTGTTGAAAGGGCAACGTTGTGATTTGGCTAGCAAAATACTACTCCCTCCGTCCCTTAATACTTGCCCCGGTTTGATCGGCACATAGTTTTAGGCAACTTAATTGACTTATTAATTTATTAGTTGATAGTTGATAGTTGATAGTTGATAGTGGGGTAATTTTTTTTAATATAGTTAGTGGGAAATGTGTCAAATAAAGGGGTTTGGGTGGAGGTGTGTTGAACTTTTTAATATTTTTTGAGGATAGGAATATATGTGGGTCCATGGTAAGTGAGAGATATGATATAATAGTAGCAAAAGTATGCCATTTATAGAAATGGGGCAAGTATTAGGGGACGGCTTTATAAGGAAAGTGAGACGAGTATTAAGGGACGGAGGGAGTATATTTGTATATTAGTCAATTGGAATCTGCCTCCTTGAGCTTTTGTGATAAAAAATATAGTCAGTATTCAGTTGGTTATCTGTCCATTCCGGAGGGGGGGGGGTATNCAACTCTTCTTTAAGAAAATGATAGAATAAATTGCTTTGAGATTAACTCTTCTTCAGTGAAGAAGTCTTTCTTGTGGGGGTGAGGGGTGAGTTTGTACTTTGGGTCTTTGGAACTTATATGGAGCTTTGTGAGTACAAGAGCTTTGTTATGGAGAGTGAGTTTGTTTTGGGATCTTAATTATCTTGTGTTCCGTAACATGTACCCCGTATTTTGCTAAAACATGACTGAATGTATCTAAGAATGTCCAATTAGAAATTTCTAGTATACATGTTTTACACTGAAAAAAACGAAATGAATATACCTGTATTATACTGTTAGACACAAATTTACAGTTCAGCAAAGTCTGAAGATTTTTATTGCTTTAACTTAAGGCATGGGTTTTTGATATTACGTGGATTGAAATTGAGGTAATGGGCTTCAGCAGTTCCAACTGCCAAGCATGTTTCAAAAGCAGATCTGGACAACAGATTCATATTTTTTACTGGGCATTTGGGTCTTTTTGTAAGATGATTTCTTGTTATTGCCTTTTGGAGTATTTACTTCACTATAGAGTAATATCTGGGTTGGGTTTAAACTGTATATATTTTTCTCTGGTGGCATACTCAAATTTACACTTTAATCCTTCCTCTCATCAAGTGCACATCTGTAGCACTTCTTTTCTCATCGTGGATTTTTTTCTTTTCAGCTTGAAGCTGTCATCGAAGCTGAAAAACAAGCCGCAAGGGACTTGATTCGTGAAAAGAGAAAAGATAGAGCCTTGCTTGCATTGAAGAAGAAGAAGGTGCAGGAAGAATTGCTTCAGAAAGTTGATGCTTGGCTAATAAATGTTGAGCAGCAAGTAAGAACTAAAGGCAATATAGTCTTCCAGTTTTTTTATGCTAGTTTAAATGGCCTTATTCTTTTGAAGATCTTAGTTTTACAATTTTATTTGATTTAGTTGGCAGATATAGAATTATCCAGCAAGCAGAAGGCTGTTTTTGAGAGCTTGAAGGCGGGAAACAACGCAATGAAAGCAATACAAAGTGAGCTTAACCTGGATGATGTTCAGAAGTTGATGGATGATACTGAAGAAGCGAGAGCCTATCAAGAGGTATGCATCACTTTATTCATTTTGTTTCCTCTTCAGTGGGATTAAATTGAGATTAGAAGTGGTCTGATATATCGTATAGTTTACTTGCTGAATTGATTGTCATGATTTCTTTTTTCTTTTTTCTCGGAGGGTTGGAGTTGGGGGTAGAATTTAAAATTTGATCAAAGCAGTAAATAAGGTAAAAAATGGCCTGCAAATAAAAGAAATTACTGCAGTTGTAATACAAAATATAAATAGTAAACCTTATCACTTTGCCAGTCTTAACCATAGTTTTGACTCTTGATGGCCGTAGTAGGCTCCCTTTTCCAATAATCCAATCAATGTCCATGCCTCGTCTCAAAGGTTGTTATTCACCTTTTCACGTCATAATGACAAAGTCGGGGTGTCATGACCAGATGTTTGGCATTAACCTTATTACAATTGTAATACAAAGCAGTTGCAGCTATTAGTTATCAGTTTCTAGCTGATACTACGTAATTATTTTTTATTGCCATGGGCATCCTCGAGTCTCCGTGAAGATGTCTCTCGTATTTCTCCTTTATGGAAAGTTGCAGCCACTCTCATTACTTCAATAGGACAATAGGTAGTGTCTGGTGACCAACAATTATATACTGTTTTAGACCAAAGTTGGAGATTCCGGGATCCCGTCTCAGAAACTCCTAAAATTTTGAGGAATGTGTCCGATGATCATATAAGGAAGTTTGGAATCATAAAACCCCTCTAGTTTGTCACTTAGAGCCACGAAATGGCCTTGATTCAACAACATGGATTTGTAAGAATATCGGCTAAAATGTCATTTAAGAGGCGTATTAGATGGTTCTAAGCACCCAATATACCCTCGGGGACCCATGGCCCCATGGGGTATACAGGAATCATCCGGACCTCTAACCTTTTCCGAGTCCGAAAATGTCCAAATTTGAAGGCTATACACCGTTTTTGACCAAATTGACCTCGACTAGGAAACTCCTAAAATTTTGTGGAATGTGTACGATGGTCAGACAAGGAAGTTTGGAATCATAAAACCCCCACTAGTTGGTCATTTAAAGCCACATAATGGCCTTGATTCAACAACATGCGCTTGGAAGAATATCGGCTAAAATGTCAGCTTCCTGCTTTATATTTGGTTGGTAAGTGGGCGACCTTGCCATCAAGTTGGATCACTCGATCCTTGAGTGTGTCCTTTGTAACGATCGCTGCTTATAACAGGGATATAATCTAAATCGAGCTTCATGTTTATATTTTGGTGAATGAAAAAATATGAATTAGGAAGAAAAAGACATTGTGACAACACTTAGGTACATTGTAGAAAACCATAGATGGAAGGTGGCTTTGCAATGGCTACCAAAGCACTATTAGTTGCAATTCATATTTTCTTCGGCATTACTTATAAAAGTTATAATCAACCGGCTCTAACTGTTCACTCTATATGTTATGTGAACCTGTGGCCCTGTGGGCATTTCTTGTTAGAATTAATTAGTTTGTTTTAGTATTTTTTTTTTATATATATAAGACTAATAATCTTTCATCTGGTATCTGTTTCTAGGAAATAAATGCCATATTGGGGGAGAAATTATCTGCTGATGACGAGGAAGAAGTATTAGCAGAATTTGATAATCTAGAAGCACAGGTATGTTTATCATTGAGATACTTGCCCTTATATATGCAGTGTCTAGTATAAGAACTTGCTGAGCTGATTGAAACTGCTATTAGATCAAGTCAGTCTGTAAACAATTAGGTCTGGAATAACAAGAAAATGTTCAAATTTTAAAAGCACACTCACATAATTAAGCCACCAGCAATATTGTAGTGAATTGCAACTTTGCAAGAGACTATAAGGACTTGCTGAGGTGATTGAAACTGCATGTTAATTTGTATACGCTATTGGAAATATTTGAAAGGCTAGTTGGATGCCCTGCATACTCTGAGCTGATTCAACTTTTATAATGTCCAGAAGCTGTAAAAGACCAAAAACGCACTTGCTGCTTCAGAAGTTTTCTGAAACAGCTTGTTCAATGTAAATAAAGGATAATCTAGATGAATATTATATACTCACCCGTACATGCAGAAATGTATTTCATGGCACCTTACAGATACCATAATGTTCATATTTTGTATAAAGCTATAAACTTGGTAGTTGGTAGTTTAGGCATGGTAAGAATTGTGAACTTTGAACTTCGAACACGTGCTAGCAAGAAGTATATGATTGCATATTACAGTTGAGCATTGTGTATGTTCTTTCTCGTAATCTTCTCTGACGAGATATGCATTTTTTGGTGTAGCTTACTGTACAAGATCTACCAAAAGTTCCCACTGCAGTTCCTGAAGAAGAAGAGAAGTTGGATCTACCCGACGTTCCTACCAAGGCTCCTGTTGCTTCAAATATGACTGATGATATTGAGGAGGTTTCAGATAAAGTTCCTGAAAAGAGAAAAGGTATTTACCCCTTTGTCCTTCCGCATTCTTCTTTCTTTCTGTTTTCGCCCTGGGATATTGATGGTATTTTCGAGAGGTGATCAAAATTCGGGTCGGGCCGGGATTTAACACAAAAAATTATGCCCAAACCCATAAATTTGGTGCAGGCTTTCGGGTCGAATTGGGTTTTTCGGGCTGGTTCGGGCTTTGATCTAGAATGTGTATTTGAAGTTGCCCAAACCTATACTTTTTCGGGCTGGGCCGGGCCATAGATGATCAGGTCTAGTTTTCCCTGAAATTTGTGTCAACAACCATTTGATTTCATTGGCTCTTCGTTGACAGTTATGGAAGAACCATTGCCTGCATACCCTGCTTAAAGACTTCGGGGCTGACCGTGGAGCGCGAGTTGAAGACACAACACAACCCTTCTCATTGATTGATTTGGTGTTTCAACTGAAATCATGTTCAAAATGCCTATGTTTGTGCTCCATTAATTTTTTTTTTTTCTGGTCATGTATAGTATTGCAGTTGTGTACATTATTATCTTTAAATCCCATTCCAGCTAATCAGGAAAGCTAA

mRNA sequence

GAAAGCTAACCTTTTTTTGGGAAAGAAAGATAAATTTTTAGCCTAGAGGTCGCTGTGGCCTGTGGTGGTCTTGCTTTCTCCTTTTCTTACTCGCATCCAGCGCGCAACCTTATTCTCCCCTCTTGCCTGTTACCGGCCACTAGACAGACCCAACCCNCCCCCCCTACCACCGCAACCACTACAACCACCGTGCATCGAATTCCTGTTGCAGATTTCTCCGGCCACCGCCGTGCAACAATTGCGAACCACCGCGATAAAAGTGATAAAGATTATTGGGCAAAAAAAGCTCTTTAAGCTTACATAGTTTTCTCTCAAATTGAATTGGGGAGTGTTTAAATACAGATGGGTAACATTTTTGTGAAGAAACCCAAGATCACTGAGGTTGATCGTGCAATTCTCTCTCTTAAAACTCAGAGACGCAAACTAGGTCAATATCAGCAACAGCTTGAAGCTGTCATCGAAGCTGAAAAACAAGCCGCAAGGGACTTGATTCGTGAAAAGAGAAAAGATAGAGCCTTGCTTGCATTGAAGAAGAAGAAGGTGCAGGAAGAATTGCTTCAGAAAGTTGATGCTTGGCTAATAAATGTTGAGCAGCAATTGGCAGATATAGAATTATCCAGCAAGCAGAAGGCTGTTTTTGAGAGCTTGAAGGCGGGAAACAACGCAATGAAAGCAATACAAAGTGAGCTTAACCTGGATGATGTTCAGAAGTTGATGGATGATACTGAAGAAGCGAGAGCCTATCAAGAGGAAATAAATGCCATATTGGGGGAGAAATTATCTGCTGATGACGAGGAAGAAGTATTAGCAGAATTTGATAATCTAGAAGCACAGCTTACTGTACAAGATCTACCAAAAGTTCCCACTGCAGTTCCTGAAGAAGAAGAGAAGTTGGATCTACCCGACGTTCCTACCAAGGCTCCTGTTGCTTCAAATATGACTGATGATATTGAGGAGGTTTCAGATAAAGTTCCTGAAAAGAGAAAAGTATTGCAGTTGTGTACATTATTATCTTTAAATCCCATTCCAGCTAATCAGGAAAGCTAA

Coding sequence (CDS)

ATGGGTAACATTTTTGTGAAGAAACCCAAGATCACTGAGGTTGATCGTGCAATTCTCTCTCTTAAAACTCAGAGACGCAAACTAGGTCAATATCAGCAACAGCTTGAAGCTGTCATCGAAGCTGAAAAACAAGCCGCAAGGGACTTGATTCGTGAAAAGAGAAAAGATAGAGCCTTGCTTGCATTGAAGAAGAAGAAGGTGCAGGAAGAATTGCTTCAGAAAGTTGATGCTTGGCTAATAAATGTTGAGCAGCAATTGGCAGATATAGAATTATCCAGCAAGCAGAAGGCTGTTTTTGAGAGCTTGAAGGCGGGAAACAACGCAATGAAAGCAATACAAAGTGAGCTTAACCTGGATGATGTTCAGAAGTTGATGGATGATACTGAAGAAGCGAGAGCCTATCAAGAGGAAATAAATGCCATATTGGGGGAGAAATTATCTGCTGATGACGAGGAAGAAGTATTAGCAGAATTTGATAATCTAGAAGCACAGCTTACTGTACAAGATCTACCAAAAGTTCCCACTGCAGTTCCTGAAGAAGAAGAGAAGTTGGATCTACCCGACGTTCCTACCAAGGCTCCTGTTGCTTCAAATATGACTGATGATATTGAGGAGGTTTCAGATAAAGTTCCTGAAAAGAGAAAAGTATTGCAGTTGTGTACATTATTATCTTTAAATCCCATTCCAGCTAATCAGGAAAGCTAA

Protein sequence

MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALLALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDDVQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEEEEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVLQLCTLLSLNPIPANQES

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo06752	Spo06752	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo06752.1	Spo06752.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06752.1.utr5p.1	Spo06752.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06752.1.CDS.6	Spo06752.1.CDS.6	CDS
Spo06752.1.CDS.5	Spo06752.1.CDS.5	CDS
Spo06752.1.CDS.4	Spo06752.1.CDS.4	CDS
Spo06752.1.CDS.3	Spo06752.1.CDS.3	CDS
Spo06752.1.CDS.2	Spo06752.1.CDS.2	CDS
Spo06752.1.CDS.1	Spo06752.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06752.1.exon.6	Spo06752.1.exon.6	exon
Spo06752.1.exon.5	Spo06752.1.exon.5	exon
Spo06752.1.exon.4	Spo06752.1.exon.4	exon
Spo06752.1.exon.3	Spo06752.1.exon.3	exon
Spo06752.1.exon.2	Spo06752.1.exon.2	exon
Spo06752.1.exon.1	Spo06752.1.exon.1	exon

Homology

[Close]

BLAST of Spo06752.1 vs. NCBI nr
Match: gi|902173097|gb|KNA08220.1| (hypothetical protein SOVF_164600, partial [Spinacia oleracea])

HSP 1 Score: 394.0 bits (1011), Expect = 1.800e-106
Identity = 219/230 (95.22%), Postives = 222/230 (96.52%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD
Sbjct: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE
Sbjct: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180

Query: 181 EEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVLQLCTLLSLNPIPA 231
           EEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKV++        P+PA
Sbjct: 181 EEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVME-------EPLPA 223

[Close]

BLAST of Spo06752.1 vs. NCBI nr
Match: gi|731369937|ref|XP_010665572.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 357.1 bits (915), Expect = 2.400e-95
Identity = 197/231 (85.28%), Postives = 215/231 (93.07%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIR+KRKDRALL
Sbjct: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIRDKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKKVQEELLQKVDAWLINVEQQLADIEL+SKQKAV+ESL++GNNAMKAIQSE+NLDD
Sbjct: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELASKQKAVYESLQSGNNAMKAIQSEINLDD 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDT EA+AYQ+EINAILGEKL+A+DEEEVLAEFDNLEAQLT QDLP+VPTA PEE
Sbjct: 121 VQKLMDDTAEAKAYQDEINAILGEKLTAEDEEEVLAEFDNLEAQLTAQDLPEVPTAAPEE 180

Query: 181 EEKLDLPDVPTKAPVASNM-TDDIEEVSDKVPEKRKVLQLCTLLSLNPIPA 231
           EEKL+LPDVPTK PVASN+   D EEVSD++PEKRKV++        P+PA
Sbjct: 181 EEKLELPDVPTKVPVASNVAAKDFEEVSDELPEKRKVME-------EPLPA 224

[Close]

BLAST of Spo06752.1 vs. NCBI nr
Match: gi|590709161|ref|XP_007048477.1| (Vacuolar protein sorting-associated protein 20.2 isoform 3, partial [Theobroma cacao])

HSP 1 Score: 320.5 bits (820), Expect = 2.500e-84
Identity = 176/219 (80.37%), Postives = 197/219 (89.95%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+ VKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLLVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKK QEELL++VD WLINVEQQLADIEL+SKQKAVFESLK+GNNA+KAIQSE+NL+D
Sbjct: 61  ALKKKKAQEELLKQVDTWLINVEQQLADIELASKQKAVFESLKSGNNAIKAIQSEINLED 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDTEEA+AYQ+EINAILGEKLSA+DEEE+LAEF+ LE Q+ VQ +P+VPT  P E
Sbjct: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFETLETQMAVQHMPEVPTTAPSE 180

Query: 181 EEKLDLPDVPTKAPVASNMT-DDIEEVSDKVPEKRKVLQ 219
           E+ LDLP+VPTK PVASN   DD E  S +V  KR+V +
Sbjct: 181 EQNLDLPNVPTKKPVASNAARDDDEIASAEVSTKRRVFE 219

[Close]

BLAST of Spo06752.1 vs. NCBI nr
Match: gi|823252801|ref|XP_012459016.1| (PREDICTED: vacuolar protein sorting-associated protein 20 homolog 1 [Gossypium raimondii])

HSP 1 Score: 320.1 bits (819), Expect = 3.200e-84
Identity = 178/230 (77.39%), Postives = 200/230 (86.96%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+  KKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLLAKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKK QEELL++VD WLINVEQQLADIEL+SKQKAVF+SLKAGNNA+KAIQSE+N+DD
Sbjct: 61  ALKKKKAQEELLKQVDTWLINVEQQLADIELASKQKAVFDSLKAGNNAIKAIQSEINIDD 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDTEEA+AYQ+EINAILGEKLSA+DEEE+LAEF+NLE Q+ VQD+P+VPT    E
Sbjct: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFENLETQMAVQDMPEVPTKQRSE 180

Query: 181 EEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVLQLCTLLSLNPIPA 231
           EEKLDLPDVPTK P AS+   D  E+S     KR+V++        P+PA
Sbjct: 181 EEKLDLPDVPTKKPFASDAATDDAEIS----TKRRVME-------EPLPA 219

[Close]

BLAST of Spo06752.1 vs. NCBI nr
Match: gi|590709154|ref|XP_007048475.1| (Vacuolar protein sorting-associated protein 20 isoform 1 [Theobroma cacao])

HSP 1 Score: 319.7 bits (818), Expect = 4.200e-84
Identity = 179/227 (78.85%), Postives = 200/227 (88.11%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+ VKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLLVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKK QEELL++VD WLINVEQQLADIEL+SKQKAVFESLK+GNNA+KAIQSE+NL+D
Sbjct: 61  ALKKKKAQEELLKQVDTWLINVEQQLADIELASKQKAVFESLKSGNNAIKAIQSEINLED 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDTEEA+AYQ+EINAILGEKLSA+DEEE+LAEF+ LE Q+ VQ +P+VPT  P E
Sbjct: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFETLETQMAVQHMPEVPTTAPSE 180

Query: 181 EEKLDLPDVPTKAPVASNMT-DDIEEVSDKVPEKRKVLQLCTLLSLN 227
           E+ LDLP+VPTK PVASN   DD E  S +V  KR+    C  LSL+
Sbjct: 181 EQNLDLPNVPTKKPVASNAARDDDEIASAEVSTKRR--GFCLSLSLS 225

[Close]

BLAST of Spo06752.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLT0_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_164600 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.200e-106
Identity = 219/230 (95.22%), Postives = 222/230 (96.52%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD
Sbjct: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE
Sbjct: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180

Query: 181 EEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVLQLCTLLSLNPIPA 231
           EEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKV++        P+PA
Sbjct: 181 EEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVME-------EPLPA 223

[Close]

BLAST of Spo06752.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B679_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200630 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.700e-95
Identity = 197/231 (85.28%), Postives = 215/231 (93.07%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIR+KRKDRALL
Sbjct: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIRDKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKKVQEELLQKVDAWLINVEQQLADIEL+SKQKAV+ESL++GNNAMKAIQSE+NLDD
Sbjct: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELASKQKAVYESLQSGNNAMKAIQSEINLDD 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDT EA+AYQ+EINAILGEKL+A+DEEEVLAEFDNLEAQLT QDLP+VPTA PEE
Sbjct: 121 VQKLMDDTAEAKAYQDEINAILGEKLTAEDEEEVLAEFDNLEAQLTAQDLPEVPTAAPEE 180

Query: 181 EEKLDLPDVPTKAPVASNM-TDDIEEVSDKVPEKRKVLQLCTLLSLNPIPA 231
           EEKL+LPDVPTK PVASN+   D EEVSD++PEKRKV++        P+PA
Sbjct: 181 EEKLELPDVPTKVPVASNVAAKDFEEVSDELPEKRKVME-------EPLPA 224

[Close]

BLAST of Spo06752.1 vs. UniProtKB/TrEMBL
Match: A0A061DJ33_THECC (Vacuolar protein sorting-associated protein 20.2 isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_001550 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.700e-84
Identity = 176/219 (80.37%), Postives = 197/219 (89.95%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+ VKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLLVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKK QEELL++VD WLINVEQQLADIEL+SKQKAVFESLK+GNNA+KAIQSE+NL+D
Sbjct: 61  ALKKKKAQEELLKQVDTWLINVEQQLADIELASKQKAVFESLKSGNNAIKAIQSEINLED 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDTEEA+AYQ+EINAILGEKLSA+DEEE+LAEF+ LE Q+ VQ +P+VPT  P E
Sbjct: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFETLETQMAVQHMPEVPTTAPSE 180

Query: 181 EEKLDLPDVPTKAPVASNMT-DDIEEVSDKVPEKRKVLQ 219
           E+ LDLP+VPTK PVASN   DD E  S +V  KR+V +
Sbjct: 181 EQNLDLPNVPTKKPVASNAARDDDEIASAEVSTKRRVFE 219

[Close]

BLAST of Spo06752.1 vs. UniProtKB/TrEMBL
Match: A0A0D2THX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G036800 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 2.300e-84
Identity = 178/230 (77.39%), Postives = 200/230 (86.96%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+  KKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLLAKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKK QEELL++VD WLINVEQQLADIEL+SKQKAVF+SLKAGNNA+KAIQSE+N+DD
Sbjct: 61  ALKKKKAQEELLKQVDTWLINVEQQLADIELASKQKAVFDSLKAGNNAIKAIQSEINIDD 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDTEEA+AYQ+EINAILGEKLSA+DEEE+LAEF+NLE Q+ VQD+P+VPT    E
Sbjct: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFENLETQMAVQDMPEVPTKQRSE 180

Query: 181 EEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVLQLCTLLSLNPIPA 231
           EEKLDLPDVPTK P AS+   D  E+S     KR+V++        P+PA
Sbjct: 181 EEKLDLPDVPTKKPFASDAATDDAEIS----TKRRVME-------EPLPA 219

[Close]

BLAST of Spo06752.1 vs. UniProtKB/TrEMBL
Match: A0A061DJU3_THECC (Vacuolar protein sorting-associated protein 20 isoform 1 OS=Theobroma cacao GN=TCM_001550 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 3.000e-84
Identity = 179/227 (78.85%), Postives = 200/227 (88.11%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+ VKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLLVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKKK QEELL++VD WLINVEQQLADIEL+SKQKAVFESLK+GNNA+KAIQSE+NL+D
Sbjct: 61  ALKKKKAQEELLKQVDTWLINVEQQLADIELASKQKAVFESLKSGNNAIKAIQSEINLED 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDTEEA+AYQ+EINAILGEKLSA+DEEE+LAEF+ LE Q+ VQ +P+VPT  P E
Sbjct: 121 VQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFETLETQMAVQHMPEVPTTAPSE 180

Query: 181 EEKLDLPDVPTKAPVASNMT-DDIEEVSDKVPEKRKVLQLCTLLSLN 227
           E+ LDLP+VPTK PVASN   DD E  S +V  KR+    C  LSL+
Sbjct: 181 EQNLDLPNVPTKKPVASNAARDDDEIASAEVSTKRR--GFCLSLSLS 225

[Close]

BLAST of Spo06752.1 vs. ExPASy Swiss-Prot
Match: VP202_ARATH (Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.500e-84
Identity = 176/220 (80.00%), Postives = 196/220 (89.09%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+FVKKPKITEVDRAILSLKTQRRKLGQYQQQLE VIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKK+ QEELL++VD WLINVEQQLADIEL+SKQKAVFESLK GNNA+KAIQSE+NLDD
Sbjct: 61  ALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDD 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTA--VP 180
           VQKLMDDT EA+AYQ+E++AILGEKLSA+DEEE+LAEFDNLE+ L V+D+P+VPT   +P
Sbjct: 121 VQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMP 180

Query: 181 EEEEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVLQ 219
           EE EK+DLPDVPTKAPVASN T            KRKVL+
Sbjct: 181 EEPEKMDLPDVPTKAPVASNET---------TSTKRKVLE 211

[Close]

BLAST of Spo06752.1 vs. ExPASy Swiss-Prot
Match: VP201_ARATH (Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 5.700e-81
Identity = 170/230 (73.91%), Postives = 196/230 (85.22%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+FVKKP+ITEVDRAILSLKTQRRKLGQYQQ+LE VIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           AL+KK+ QEELL++VD W+INVEQQL DIEL+SKQKAVFESLK GN+A+KAIQSEL+LDD
Sbjct: 61  ALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDD 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVPEE 180
           VQKLMDDT +A+AYQ+E+NAILGEKLSA+DEE++LAEFDNLE+QL V ++P+VPT   EE
Sbjct: 121 VQKLMDDTADAKAYQDELNAILGEKLSAEDEEDILAEFDNLESQLIVDEMPEVPTKESEE 180

Query: 181 EEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVLQLCTLLSLNPIPA 231
            EKLDLPDVPTK PVASN     E    +   K KVL+        P+PA
Sbjct: 181 SEKLDLPDVPTKTPVASN----AEITPAESATKTKVLE-------EPLPA 219

[Close]

BLAST of Spo06752.1 vs. ExPASy Swiss-Prot
Match: CHMP6_DANRE (Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2 SV=3)

HSP 1 Score: 134.4 bits (337), Expect = 1.600e-30
Identity = 84/218 (38.53%), Postives = 137/218 (62.84%), Query Frame = 1


		  
Query: 1   MGNIFVKKP--KITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRA 60
           MGN+F KK   ++TE DRA+L LK QR KL QYQ+++   ++ E+Q A+ L+++ +KD+A
Sbjct: 1   MGNLFGKKKATRVTEQDRAVLQLKQQRDKLKQYQKRITLQMDKERQLAKQLLKDGKKDKA 60

Query: 61  LLALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNL 120
           LL LKKK+ Q++LL+K +  + N+E+ + DIE +  +  V E LK GN+ +K +   L++
Sbjct: 61  LLLLKKKRYQDQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSI 120

Query: 121 DDVQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVP 180
           ++V+K+MD+T +A  YQ++I+ +L   L+ +DEE VLAE + +       +LP+VP    
Sbjct: 121 EEVEKIMDETHDAIEYQKQIDEMLAGSLTQEDEEAVLAELEAITQGEADLELPEVPGE-- 180

Query: 181 EEEEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKV 217
                 +LP+VP + PV        +E   K PE+  V
Sbjct: 181 ------ELPEVPEQEPVRE------KERVKKKPEREMV 204

[Close]

BLAST of Spo06752.1 vs. ExPASy Swiss-Prot
Match: CHMP6_DICDI (Charged multivesicular body protein 6 OS=Dictyostelium discoideum GN=chmp6 PE=3 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 7.400e-28
Identity = 80/182 (43.96%), Postives = 121/182 (66.48%), Query Frame = 1


		  
Query: 7   KKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALLALKKKK 66
           K+ KI++ DRA+L+LK QR KL  YQ Q+      E   A++  +  +K++ALLALKKKK
Sbjct: 14  KEDKISKTDRAVLNLKIQRDKLKNYQTQV-----LEIAIAKECSKAGKKNQALLALKKKK 73

Query: 67  VQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDDVQKLMD 126
            QE++L +  A L N+E+ +A++E +  Q  +FESLK GN ++K IQ E++L+DV+ LM+
Sbjct: 74  YQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQGNESLKEIQKEMSLEDVENLME 133

Query: 127 DTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVP-TAVPEEEEKLD 186
           +T EA  YQ +I+  L  K S ++E+++L E D +E QL  Q  PKVP T +P    K++
Sbjct: 134 ETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQLNAQQYPKVPETQLP----KIE 186

Query: 187 LP 188
           LP
Sbjct: 194 LP 186

[Close]

BLAST of Spo06752.1 vs. ExPASy Swiss-Prot
Match: CHM6B_XENLA (Charged multivesicular body protein 6-B OS=Xenopus laevis GN=chmp6-b PE=2 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 2.800e-27
Identity = 76/218 (34.86%), Postives = 130/218 (59.63%), Query Frame = 1


		  
Query: 1   MGNIFVKK--PKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRA 60
           MGN+F +K   ++TE D+A+L LK QR KL QYQ+++   ++ E++ A+ L+ + +K++A
Sbjct: 1   MGNLFARKRRSRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKA 60

Query: 61  LLALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNL 120
            L LKKK+ QE+LL+K D  + N+E+ + DIE +  +  V E LK GN  +K +   +++
Sbjct: 61  KLLLKKKRYQEQLLEKTDNQISNLEKMVDDIEFAQIEMKVIEGLKVGNEWLKKMHEVMSI 120

Query: 121 DDVQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTAVP 180
           ++V+K+M++T+E   YQ +I+ +L   L+A+DEE +L E + +                 
Sbjct: 121 EEVEKIMEETQEGIEYQRQIDEMLSGSLTAEDEEAILEELEAI----------------- 180

Query: 181 EEEEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKV 217
             +E L+LP+ P+            E +SD VPEK+ V
Sbjct: 181 -TQEDLELPEAPS------------EPLSDTVPEKQAV 188

[Close]

BLAST of Spo06752.1 vs. TAIR (Arabidopsis)
Match: AT5G09260.1 (vacuolar protein sorting-associated protein 20.2)

HSP 1 Score: 313.9 bits (803), Expect = 8.200e-86
Identity = 176/220 (80.00%), Postives = 196/220 (89.09%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+FVKKPKITEVDRAILSLKTQRRKLGQYQQQLE VIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           ALKKK+ QEELL++VD WLINVEQQLADIEL+SKQKAVFESLK GNNA+KAIQSE+NLDD
Sbjct: 61  ALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDD 120

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSADDEEEVLAEFDNLEAQLTVQDLPKVPTA--VP 180
           VQKLMDDT EA+AYQ+E++AILGEKLSA+DEEE+LAEFDNLE+ L V+D+P+VPT   +P
Sbjct: 121 VQKLMDDTAEAKAYQDELSAILGEKLSAEDEEEILAEFDNLESLLIVEDMPEVPTTELMP 180

Query: 181 EEEEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKVLQ 219
           EE EK+DLPDVPTKAPVASN T            KRKVL+
Sbjct: 181 EEPEKMDLPDVPTKAPVASNET---------TSTKRKVLE 211

[Close]

BLAST of Spo06752.1 vs. TAIR (Arabidopsis)
Match: AT5G63880.2 (SNF7 family protein)

HSP 1 Score: 288.5 bits (737), Expect = 3.700e-78
Identity = 170/254 (66.93%), Postives = 196/254 (77.17%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           MGN+FVKKP+ITEVDRAILSLKTQRRKLGQYQQ+LE VIEAEKQAARDLIREKRKDRALL
Sbjct: 1   MGNLFVKKPQITEVDRAILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALL 60

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
           AL+KK+ QEELL++VD W+INVEQQL DIEL+SKQKAVFESLK GN+A+KAIQSEL+LDD
Sbjct: 61  ALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDD 120

Query: 121 VQKLMDDTEEARAYQ------------------------EEINAILGEKLSADDEEEVLA 180
           VQKLMDDT +A+AYQ                        +E+NAILGEKLSA+DEE++LA
Sbjct: 121 VQKLMDDTADAKAYQDCENLYNLFCRAFVFDDSIYISECQELNAILGEKLSAEDEEDILA 180

Query: 181 EFDNLEAQLTVQDLPKVPTAVPEEEEKLDLPDVPTKAPVASNMTDDIEEVSDKVPEKRKV 231
           EFDNLE+QL V ++P+VPT   EE EKLDLPDVPTK PVASN     E    +   K KV
Sbjct: 181 EFDNLESQLIVDEMPEVPTKESEESEKLDLPDVPTKTPVASN----AEITPAESATKTKV 240

[Close]

BLAST of Spo06752.1 vs. TAIR (Arabidopsis)
Match: AT2G19830.1 (SNF7 family protein)

HSP 1 Score: 65.5 bits (158), Expect = 5.100e-11
Identity = 58/210 (27.62%), Postives = 102/210 (48.57%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           M  +F K  + T   + +  L      L + +  L      E + A++  R K K  A+ 
Sbjct: 3   MNRLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQ 62

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
            LK+K++ E+ ++++  + + +  Q+  +E +       ++L+ G +AMKA+Q   N+DD
Sbjct: 63  CLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDD 122

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSAD--DEEEVLAEFDNLE-AQLTVQDLPKVPTAV 180
           V K MD+  E     ++I   L     A+  DE+E+ AE D LE A+L  Q L  VP  V
Sbjct: 123 VDKTMDEINEQTENMKQIQEALSAPFGANDFDEDELEAELDELEGAELEEQLLQPVPIHV 182

Query: 181 PEEEEKLDLPDVPTKAPVASNMTDDIEEVS 208
           P+  +       P +AP     T + +E++
Sbjct: 183 PQGNK-------PARAPAQKQPTAEEDELA 205

[Close]

BLAST of Spo06752.1 vs. TAIR (Arabidopsis)
Match: AT4G29160.1 (SNF7 family protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.300e-9
Identity = 58/216 (26.85%), Postives = 101/216 (46.76%), Query Frame = 1


		  
Query: 1   MGNIFVKKPKITEVDRAILSLKTQRRKLGQYQQQLEAVIEAEKQAARDLIREKRKDRALL 60
           M  +F K  +     + +  L      L + ++ L     AE + A++  R K K  A+ 
Sbjct: 2   MNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQ 61

Query: 61  ALKKKKVQEELLQKVDAWLINVEQQLADIELSSKQKAVFESLKAGNNAMKAIQSELNLDD 120
            LK+K++ E  ++++  + + +  Q+  +E +       ++L++G +AMKA+Q   N+DD
Sbjct: 62  CLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDD 121

Query: 121 VQKLMDDTEEARAYQEEINAILGEKLSAD---DEEEVLAEFDNLEAQLTVQDLPKVPTAV 180
           V K MD+  E     ++I   L   + A    DE+E+ AE D LE++     L +  T  
Sbjct: 122 VDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATTA 181

Query: 181 PEEEEKLDLPDVPTKA------PVASNMTDDIEEVS 208
           P       LP VP  A      PV    T + EE++
Sbjct: 182 P------PLPSVPVPAGRQPARPVPQKRTAEEEELA 211

The following BLAST results are available for this feature:

BLAST of Spo06752.1 vs. NCBI nr
BLAST of Spo06752.1 vs. UniProtKB/TrEMBL
BLAST of Spo06752.1 vs. ExPASy Swiss-Prot
BLAST of Spo06752.1 vs. TAIR (Arabidopsis)

BLAST of Spo06752.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902173097\|gb\|KNA08220.1\|	1.8e-106	95.2	hypothetical protein SOVF_1646...	[more]
gi\|731369937\|ref\|XP_010665572.1\|	2.4e-95	85.2	PREDICTED: vacuolar protein so...	[more]
gi\|590709161\|ref\|XP_007048477.1\|	2.5e-84	80.3	Vacuolar protein sorting-assoc...	[more]
gi\|823252801\|ref\|XP_012459016.1\|	3.2e-84	77.3	PREDICTED: vacuolar protein so...	[more]
gi\|590709154\|ref\|XP_007048475.1\|	4.2e-84	78.8	Vacuolar protein sorting-assoc...	[more]

BLAST of Spo06752.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QLT0_SPIOL	1.2e-106	95.2	Uncharacterized protein (Fragm...	[more]
A0A0J8B679_BETVU	1.7e-95	85.2	Uncharacterized protein OS=Bet...	[more]
A0A061DJ33_THECC	1.7e-84	80.3	Vacuolar protein sorting-assoc...	[more]
A0A0D2THX6_GOSRA	2.3e-84	77.3	Uncharacterized protein OS=Gos...	[more]
A0A061DJU3_THECC	3.0e-84	78.8	Vacuolar protein sorting-assoc...	[more]

BLAST of Spo06752.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
VP202_ARATH	1.5e-84	80.0	Vacuolar protein sorting-assoc...	[more]
VP201_ARATH	5.7e-81	73.9	Vacuolar protein sorting-assoc...	[more]
CHMP6_DANRE	1.6e-30	38.5	Charged multivesicular body pr...	[more]
CHMP6_DICDI	7.4e-28	43.9	Charged multivesicular body pr...	[more]
CHM6B_XENLA	2.8e-27	34.8	Charged multivesicular body pr...	[more]

BLAST of Spo06752.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT5G09260.1	8.2e-86	80.0	vacuolar protein sorting-assoc...	[more]
AT5G63880.2	3.7e-78	66.9	SNF7 family protein	[more]
AT2G19830.1	5.1e-11	27.6	SNF7 family protein	[more]
AT4G29160.1	1.3e-9	26.8	SNF7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 17..193 score: 1.0
None	No IPR available	unknown	Coil	Coil	coord: 21..70 scor
None	No IPR available	PANTHER	PTHR22761	SNF7 - RELATED	coord: 1..196 score: 3.3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0070676	intralumenal vesicle formation
biological_process	GO:0015031	protein transport
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005770	late endosome
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding