Spo11929 (gene) | SpinachBase

Overview


Name	Spo11929
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	chr4 : 7913546 .. 7917739 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCAGAAAATGGGATACTCATACTCCGTATATCTTACTCGTAGTAAAATCTGGAAGTTGAAAGAGAGAAGAAGGTTCATCATCATCATTCATGTTCGTTCACACTCGTTCTGCACAATTCCTTCGCCGAGCTATCTCAATTTCAAATTCAAACTCAACATCAATTTCTCTTATTTTTTCTAAAACCCTAAACCCCAATTTCAACAACGCCGTATTTCAATGTTTGATTCGGAAAATCAGCACAACTTCATCGTTGTCATCATCGGCGGCGGCGGAAGGAGTGTGGCGGGACCCTAATAGAATATCAATATGGAGGAGAAAGAAAGAAATTGGGAAAGAAGGTTTAATTGTTGCGAAAGAGTTGAAGCGTCTTCAATCAAACCCTCTTCGTCTTCAACGATGTATTCAATCAAATGTTTCTCGTCTCCTTAAATCTGACCTTGTTTCTGTTCTTGCTGAGTTTCAACGCCAAGACCAAGTATTTCTCTCTATGAAAGTATGCACCTTGCTCTCTCTCTCCTCCATTTTTGGTGTTAAAGTTTGGAGTTTTTGTTGTGGTTTTGTTAAGATAGCTTAATTTGACAGGTTTTTTTTGATGATAATGGTTTATTGGATGTTATTGATTGGTTTAAAGCTATGTATGTTCTCTTTACCTTGTGAAATTTAGCTGCTTCTCCCAAACAAACAGCTAGACTAGAAAAATCTAGTAACTAAAATGTCTAGAAAAATCTAGTAACTAAAGTGTCTAGAATTATCCTAAGAAAAATCTAGATAAATAAGGAGAGTACAAGAATCTAGAAACCAAAATACAACCACTATAAATATGTTGCATTTGCATAAGTTTAGAGGTGAGCCAATCAAAAGAGCTCCCACAACATATGAGGGTAGAAACAAGGGTTCTACCAAAGAGATAAACGAGAGACATGAGCTATCGCAAATACTGTTGTAGAATTCTTATTAATGAAATCATGATGAAAATACAATTTTGTTATATAATTGAGGTCCATCAAAACTTCCGCGTGCGTTCTCAAATTCCTATCATGGTATCGAGCTCAACAAATCCTTGCTAGTAACATCTAGGGTTTGATCGCCGATACATTTGGCCTGAAGATGAAACTCCACCGAGCAATACTCACACTGTCCGTCACCGTCGCAGGCGTCGCGGTCACGCGAAAACCGCATAGCCATGGCACGTTCACTAGTAAAAGGGATGAGGCCGAGGCGGTGAGCGATGAACTCGTCGTTGAGAACAGAAGAGTTAACTTCGATTTCGACAAGATCGACGACGACCGTCGGCACCTCGGCTATCATTACACGGCGGAGAGCGTTAGCCATGCTGGAGTTGGTTTTGCGGAGCTCGAATTTTCATGAAATCGTTACGCATTTCTCTGATTTTGATTTCATGGAAGCGTTGGTAGGATGCTCCCCATTGTTGGGGTTTTCGATTGCAGGGTATGAGGAGAGAGAAATGAGCTGAAACCCTTTACCTTTTCTAGCTATTGCTCTAAGCTTCAACTCTGACCTATTTGCTAATGCCCTTGTCATTAGCAAACTTCAAAATTTGAAGTTCTAACAAAATCTAACAAAATCAGTTTTGATCACCAGAAAATTAGTTCTGATTAGAAAATTCAGTTGGGAAGAGCTAAGCACAATATGATTGTTACAGAATTTGGAAAATTTGTGCTAATATATGGTGGACTGGGTAATCTGTTCATTTCATGAGCTGTTACTCTGTTAGTAGTAAATTGGATGTTTGGTAGGATGCCGATGAATGCTTGCATTTGAAGTGGGTTTGGCATTTCTTCGTGTTTGATTTAGTTAAATGAAGACGTAGAACAATGGTTTATTGTATGTTATTTATATTGGTTTAAGGCTATGTATGTTCTCACCACCTTATAAAATTTAGCTGCACCGCCCCAAAAAGAAGTTGTGATGAGCAGAAATCGATTTCGATAAGCTAAAATCAGTTTTGATTTGGCATTTCATCCTGTTTGATTTAGTTAGGTGAAGACATAGAACAAGTTTTTGTTTGGATCATTGGAGGAATAATGGTAATGGTTTGTTGGGATCCTTAATTTTTTTGGAATGGAGATAGGCGTATACTCGTATAGTGATATAGATGTTGAAATGTGATACCTTTCAAGTGCTCATTATATTTGATTTGCACAAAATATGGTGTGCATGAATATGACGGTTGAAGTGAGTGTAATTCATCTCAGTTTTGAATATGTGGAAGGCCTGAATCGCCTGATTCTATGTCCTTTTATCGGTTTTGGAAATGTGGAAAACACCTTCTTGGTTCCGGACTTCCTATCTCACCTTTAGAAGGGGTGAATTAAAAATAAGAAATGGGCTTGAAAGAAGTTGGGATGAGGGGAGAAAAGTTTCTAAGAAAGGGTTGGATTGAGACTTTGACTGGTCGTTGGACATGTTCCTTGTGGAGAGAGTGTATTGTCATATTTGTATTCACATGGTCTGTTTGGGTTTATAAGCAAATAGTGATAACCATTAGGGGTGCTGTTGTAACTTGTAAGTTAGCCGTAATAATACTGCAGTTTCTATTTCCCCTTTACGACGGGAACTAGGCACCTTCTGTTGTTGGCATATTGCTGTAATTTTTGGTAAGGTAGAAAAGTAATACTTCGTAGTTGTTAGAGCTTAACGAGTGAATTATAGGATGTTCCCCTATTTGGTAATCACTTTTAGCACTGACATTGCTGATGGACTGATGTTTGTAGTTTATTTTCCATCAGAACAGAATGTAAGACAGAACACTACATTTCTCTTTCAACTGCTTCTTTTCTCACAAATACTCTCAGTCTTTCTCTGGTTCTTTTAGCTCCCTCTTGTCGCCTGGTTTTTTCTTGCCTATCCTTACCTCCAAATTCGTCTTCCCTGAAATAACTTTTGGTTTCTTCTCAATTTGTAGTTGTGATTTTTGTTAGGTTGTAACACTTGTTCCAAAGCACAACAACGGATCATGCTTAGGGTTCTCCATATATTTCCTATAATTCAGAGGTCTTTTCTTCGACTTTAAGGGTACGGTACATTTAGCCTTAAATGGGCTGTAAAACACGGGGATTAATAATTTTGGAGAGATGGATCGATTTCCTTGTTAGGTAGGACTGTTGATAGTTAACATGACCTTGATGTTCTTAACATACTGCTTCTGGCATCTCTAATGAAGTTTCTATGGATTCTTCAGTTTGTCGCTACATAGACAAACTTATTTCAGTGCTCATGTGGAGTCCTACACTTATACTTGGTCTTCAACTGGTGTATGGGTTGATATTTGCACTGAGTCACTGGTGTGATCTTTATCCTTAGTCTCTTAAAAAAAGTTGGGCCATGGGCCACCTATTATAGCTTATAGATAATGATAATTTTATTCAGATAATGAGAATTTTATTTGAAGGTAAGTAGGTGGGTTTTGCTAGAGTCTTAAACTCTTAATAACAAGGGATAATGCCCACATTCTACTGACCAGGGGAGGTTGTTCTCAGATATCAGGTGCAGTGGTTATGAGTTAAAAGGGTTCTCGTTGAGATTTATCATTACCTTAAATTGGTTATATCAACTTTCAAGTAGATGTTTTTTTAGTTTTTCAACCCGAAGTGTTCTCTATTTTGCTTGATCTATTATTTGAAAATAAACAAGTGGCCCGATGTTGCTTAATGATGTAGCCACGTAGGAATCTGGTAAATCCAATAACAGTGAAGTATGCATATGGTAGAACAACCGTTTCTGATTTGAATTTCTGGTTGACCCTTTCACAGTTGTATGATGTGGTGCGTAAAGAGATATGGTACCGTCCAGACATGTTCTTCTACAGGGACATGCTCATGATGCTTGCAAGGAACCAAAAGGTCGAGGAAACAAACCGGGTGTGGGGAGACTTGAAGAGGGAAGAAGTACTATTTGATCAGCACACTTTCGGTGACATTATGAGGGCCTTTTTGGACAATGAACTGCCAAATAAGGCGATGGAAATATATGCTGAAATGAGGCAGTCCCCTGATCCCCCTCTTTCACTTCCTTTTCGAGTCATTCTGAAAGGGCTTATTCCATATCCAGAATTGAGGGAGAAGATCAAAGATGACTTTTTGGAGCTATTTCCCGGATGTTCTGTCTATGATCCTCCTGAAGACCTCTTTGATGACCAAGACTGGGAAACGGAGAGCGATACGGATTAA

mRNA sequence

TCATCAGAAAATGGGATACTCATACTCCGTATATCTTACTCGTAGTAAAATCTGGAAGTTGAAAGAGAGAAGAAGGTTCATCATCATCATTCATGTTCGTTCACACTCGTTCTGCACAATTCCTTCGCCGAGCTATCTCAATTTCAAATTCAAACTCAACATCAATTTCTCTTATTTTTTCTAAAACCCTAAACCCCAATTTCAACAACGCCGTATTTCAATGTTTGATTCGGAAAATCAGCACAACTTCATCGTTGTCATCATCGGCGGCGGCGGAAGGAGTGTGGCGGGACCCTAATAGAATATCAATATGGAGGAGAAAGAAAGAAATTGGGAAAGAAGGTTTAATTGTTGCGAAAGAGTTGAAGCGTCTTCAATCAAACCCTCTTCGTCTTCAACGATGTATTCAATCAAATGTTTCTCGTCTCCTTAAATCTGACCTTGTTTCTGTTCTTGCTGAGTTTCAACGCCAAGACCAAGTATTTCTCTCTATGAAATTGTATGATGTGGTGCGTAAAGAGATATGGTACCGTCCAGACATGTTCTTCTACAGGGACATGCTCATGATGCTTGCAAGGAACCAAAAGGTCGAGGAAACAAACCGGGTGTGGGGAGACTTGAAGAGGGAAGAAGTACTATTTGATCAGCACACTTTCGGTGACATTATGAGGGCCTTTTTGGACAATGAACTGCCAAATAAGGCGATGGAAATATATGCTGAAATGAGGCAGTCCCCTGATCCCCCTCTTTCACTTCCTTTTCGAGTCATTCTGAAAGGGCTTATTCCATATCCAGAATTGAGGGAGAAGATCAAAGATGACTTTTTGGAGCTATTTCCCGGATGTTCTGTCTATGATCCTCCTGAAGACCTCTTTGATGACCAAGACTGGGAAACGGAGAGCGATACGGATTAA

Coding sequence (CDS)

ATGTTCGTTCACACTCGTTCTGCACAATTCCTTCGCCGAGCTATCTCAATTTCAAATTCAAACTCAACATCAATTTCTCTTATTTTTTCTAAAACCCTAAACCCCAATTTCAACAACGCCGTATTTCAATGTTTGATTCGGAAAATCAGCACAACTTCATCGTTGTCATCATCGGCGGCGGCGGAAGGAGTGTGGCGGGACCCTAATAGAATATCAATATGGAGGAGAAAGAAAGAAATTGGGAAAGAAGGTTTAATTGTTGCGAAAGAGTTGAAGCGTCTTCAATCAAACCCTCTTCGTCTTCAACGATGTATTCAATCAAATGTTTCTCGTCTCCTTAAATCTGACCTTGTTTCTGTTCTTGCTGAGTTTCAACGCCAAGACCAAGTATTTCTCTCTATGAAATTGTATGATGTGGTGCGTAAAGAGATATGGTACCGTCCAGACATGTTCTTCTACAGGGACATGCTCATGATGCTTGCAAGGAACCAAAAGGTCGAGGAAACAAACCGGGTGTGGGGAGACTTGAAGAGGGAAGAAGTACTATTTGATCAGCACACTTTCGGTGACATTATGAGGGCCTTTTTGGACAATGAACTGCCAAATAAGGCGATGGAAATATATGCTGAAATGAGGCAGTCCCCTGATCCCCCTCTTTCACTTCCTTTTCGAGTCATTCTGAAAGGGCTTATTCCATATCCAGAATTGAGGGAGAAGATCAAAGATGACTTTTTGGAGCTATTTCCCGGATGTTCTGTCTATGATCCTCCTGAAGACCTCTTTGATGACCAAGACTGGGAAACGGAGAGCGATACGGATTAA

Protein sequence

MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAAAEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCSVYDPPEDLFDDQDWETESDTD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11929.1	Spo11929.1	mRNA

Homology

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BLAST of Spo11929.1 vs. NCBI nr
Match: gi|902238291|gb|KNA25114.1| (hypothetical protein SOVF_009230 [Spinacia oleracea])

HSP 1 Score: 535.4 bits (1378), Expect = 5.700e-149
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1

		  
Query: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAA 60
           MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNN VFQCLIRKISTTSSLSSSAA
Sbjct: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNVVFQCLIRKISTTSSLSSSAA 60

Query: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120
           AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV
Sbjct: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120

Query: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180
           LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE
Sbjct: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180

Query: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240
           VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI
Sbjct: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240

Query: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD 274
           KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD
Sbjct: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD 273

[Close]

BLAST of Spo11929.1 vs. NCBI nr
Match: gi|731325932|ref|XP_010673765.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 435.3 bits (1118), Expect = 8.100e-119
Identity = 226/271 (83.39%), Postives = 241/271 (88.93%), Query Frame = 1

		  
Query: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAA 60
           MF HTR+ Q LR AISIS  N  +IS +F KTLNPNF    FQ LIRK+ST +S     +
Sbjct: 1   MFGHTRTLQLLRGAISISTLNPETISHLFPKTLNPNFEIPKFQWLIRKLSTATS-----S 60

Query: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120
           A GVWR+PN ISIWRRKKEIGKEGLIVAKELKRLQSN +RLQR IQSNVSRLLKSDLVSV
Sbjct: 61  AGGVWRNPNSISIWRRKKEIGKEGLIVAKELKRLQSNHIRLQRFIQSNVSRLLKSDLVSV 120

Query: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180
           LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARN+KVEE  RVW DLK+EE
Sbjct: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVEEAKRVWEDLKKEE 180

Query: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240
           VLFDQHTFGDI+RAFLDNELPN+AMEIY EMRQSPDPPLSLPFRVILKGLIPYPELREKI
Sbjct: 181 VLFDQHTFGDIIRAFLDNELPNEAMEIYDEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240

Query: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESD 272
           KDDFLELFPG SVYDPPEDLFDDQDW+T+S+
Sbjct: 241 KDDFLELFPGFSVYDPPEDLFDDQDWKTDSE 266

[Close]

BLAST of Spo11929.1 vs. NCBI nr
Match: gi|694448964|ref|XP_009350240.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 344.4 bits (882), Expect = 1.900e-91
Identity = 166/203 (81.77%), Postives = 189/203 (93.10%), Query Frame = 1

		  
Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRRKKE+GKEGL+VAKELKRL+S PLRL   I+S+VSRLLKSDL++VLAEFQRQDQV
Sbjct: 76  LSIWRRKKEMGKEGLMVAKELKRLRSQPLRLDHFIRSHVSRLLKSDLLAVLAEFQRQDQV 135

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FLSMK+YDVVRKEIWYRPDMFFYRDMLMMLARN+KV+E  +VWGDLKREEVLFDQHTFGD
Sbjct: 136 FLSMKIYDVVRKEIWYRPDMFFYRDMLMMLARNKKVDEAKKVWGDLKREEVLFDQHTFGD 195

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           I+RAFLD  LP++AMEIY EMRQSPDPP+SLPFRVILKGL+PYPELREK+KDDFLELFP 
Sbjct: 196 IIRAFLDGGLPSEAMEIYGEMRQSPDPPISLPFRVILKGLLPYPELREKVKDDFLELFPD 255

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             VYDPPEDLF+D++W+ ES+ D
Sbjct: 256 MIVYDPPEDLFEDEEWKRESEDD 278

[Close]

BLAST of Spo11929.1 vs. NCBI nr
Match: gi|595886826|ref|XP_007213347.1| (hypothetical protein PRUPE_ppa1027127mg [Prunus persica])

HSP 1 Score: 342.8 bits (878), Expect = 5.500e-91
Identity = 165/203 (81.28%), Postives = 190/203 (93.60%), Query Frame = 1

		  
Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRR+KE+GKEGLI AKELKRL+S+PLRL + I+SNVSRLLKSDL++VLAEFQRQDQV
Sbjct: 62  LSIWRRRKEMGKEGLIAAKELKRLRSHPLRLDQFIRSNVSRLLKSDLIAVLAEFQRQDQV 121

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FLSMK+YDVVRKEIWYRPDMFFYRDMLMML RN+KV+E  +VWGDLKREEVLFDQHTFGD
Sbjct: 122 FLSMKIYDVVRKEIWYRPDMFFYRDMLMMLGRNKKVDEAKQVWGDLKREEVLFDQHTFGD 181

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           I+RAFLDN LP++AMEIY EMRQSPDPP+SLPFRVILKGL+PYPELREK+KDDFLELFP 
Sbjct: 182 IIRAFLDNGLPSEAMEIYDEMRQSPDPPISLPFRVILKGLLPYPELREKVKDDFLELFPD 241

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             +YDPPEDLF+DQ+ +TE++ D
Sbjct: 242 MIIYDPPEDLFEDQECKTENEDD 264

[Close]

BLAST of Spo11929.1 vs. NCBI nr
Match: gi|1009114387|ref|XP_015873659.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Ziziphus jujuba])

HSP 1 Score: 342.4 bits (877), Expect = 7.100e-91
Identity = 175/253 (69.17%), Postives = 208/253 (82.21%), Query Frame = 1

		  
Query: 21  NSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAAAEGVWRDPNRISIWRRKKEI 80
           N++S  L+  +  + N N      ++R  S+ S    S            +SIWRRKKEI
Sbjct: 45  NTSSSELVLQQQQHQNPNQPPLSRVLRLYSSASGSRPS------------LSIWRRKKEI 104

Query: 81  GKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDVV 140
           GKEGLIVAKELKRL+SNPLRL R I+S+VSRLLKSDLV+VLAEFQRQDQVFLSMK+YDVV
Sbjct: 105 GKEGLIVAKELKRLRSNPLRLDRFIRSHVSRLLKSDLVAVLAEFQRQDQVFLSMKIYDVV 164

Query: 141 RKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDNEL 200
           RKEIWY+PDMFFYRDMLMMLARN+KV+E+ +VW DLKRE VLFDQHTFGDI+RA+LD+ L
Sbjct: 165 RKEIWYKPDMFFYRDMLMMLARNKKVDESKQVWEDLKREGVLFDQHTFGDIIRAYLDSGL 224

Query: 201 PNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCSVYDPPEDL 260
           P++AMEIY EMR+SPDPP+SLPFRVILKGL+PYPELREK+KD+FLELFPG  VYDPPEDL
Sbjct: 225 PSEAMEIYDEMRRSPDPPISLPFRVILKGLLPYPELREKVKDEFLELFPGMIVYDPPEDL 284

Query: 261 FDDQDWETESDTD 274
           F+DQ+W  +S+ D
Sbjct: 285 FEDQEWRRDSEDD 285

[Close]

BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1Q9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_009230 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 4.000e-149
Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1

		  
Query: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAA 60
           MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNN VFQCLIRKISTTSSLSSSAA
Sbjct: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNVVFQCLIRKISTTSSLSSSAA 60

Query: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120
           AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV
Sbjct: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120

Query: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180
           LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE
Sbjct: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180

Query: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240
           VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI
Sbjct: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240

Query: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD 274
           KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD
Sbjct: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESDTD 273

[Close]

BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CM64_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g073770 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 5.600e-119
Identity = 226/271 (83.39%), Postives = 241/271 (88.93%), Query Frame = 1

		  
Query: 1   MFVHTRSAQFLRRAISISNSNSTSISLIFSKTLNPNFNNAVFQCLIRKISTTSSLSSSAA 60
           MF HTR+ Q LR AISIS  N  +IS +F KTLNPNF    FQ LIRK+ST +S     +
Sbjct: 1   MFGHTRTLQLLRGAISISTLNPETISHLFPKTLNPNFEIPKFQWLIRKLSTATS-----S 60

Query: 61  AEGVWRDPNRISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSV 120
           A GVWR+PN ISIWRRKKEIGKEGLIVAKELKRLQSN +RLQR IQSNVSRLLKSDLVSV
Sbjct: 61  AGGVWRNPNSISIWRRKKEIGKEGLIVAKELKRLQSNHIRLQRFIQSNVSRLLKSDLVSV 120

Query: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREE 180
           LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARN+KVEE  RVW DLK+EE
Sbjct: 121 LAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVEEAKRVWEDLKKEE 180

Query: 181 VLFDQHTFGDIMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240
           VLFDQHTFGDI+RAFLDNELPN+AMEIY EMRQSPDPPLSLPFRVILKGLIPYPELREKI
Sbjct: 181 VLFDQHTFGDIIRAFLDNELPNEAMEIYDEMRQSPDPPLSLPFRVILKGLIPYPELREKI 240

Query: 241 KDDFLELFPGCSVYDPPEDLFDDQDWETESD 272
           KDDFLELFPG SVYDPPEDLFDDQDW+T+S+
Sbjct: 241 KDDFLELFPGFSVYDPPEDLFDDQDWKTDSE 266

[Close]

BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: M5WMR9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa1027127mg PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 3.800e-91
Identity = 165/203 (81.28%), Postives = 190/203 (93.60%), Query Frame = 1

		  
Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRR+KE+GKEGLI AKELKRL+S+PLRL + I+SNVSRLLKSDL++VLAEFQRQDQV
Sbjct: 62  LSIWRRRKEMGKEGLIAAKELKRLRSHPLRLDQFIRSNVSRLLKSDLIAVLAEFQRQDQV 121

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FLSMK+YDVVRKEIWYRPDMFFYRDMLMML RN+KV+E  +VWGDLKREEVLFDQHTFGD
Sbjct: 122 FLSMKIYDVVRKEIWYRPDMFFYRDMLMMLGRNKKVDEAKQVWGDLKREEVLFDQHTFGD 181

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           I+RAFLDN LP++AMEIY EMRQSPDPP+SLPFRVILKGL+PYPELREK+KDDFLELFP 
Sbjct: 182 IIRAFLDNGLPSEAMEIYDEMRQSPDPPISLPFRVILKGLLPYPELREKVKDDFLELFPD 241

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             +YDPPEDLF+DQ+ +TE++ D
Sbjct: 242 MIIYDPPEDLFEDQECKTENEDD 264

[Close]

BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: A0A059D9X5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03737 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.400e-90
Identity = 169/203 (83.25%), Postives = 187/203 (92.12%), Query Frame = 1

		  
Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRRKKEIGKEGLIVAKELKR+QSNP+RL R I+S+VSRLLKSDL+SVLAEFQRQDQV
Sbjct: 57  LSIWRRKKEIGKEGLIVAKELKRIQSNPVRLDRFIKSHVSRLLKSDLISVLAEFQRQDQV 116

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FL MKLY+VVRKEIWYRPDMFFYRDMLMMLARN+ V+E   VW DLKREEVLFDQHTFGD
Sbjct: 117 FLCMKLYNVVRKEIWYRPDMFFYRDMLMMLARNKNVDEVRHVWEDLKREEVLFDQHTFGD 176

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           IMRAFLD+ LP++AMEIY EMR+SPDPPLSLPFRVILKGLIPYPELRE++KDDFLELFPG
Sbjct: 177 IMRAFLDSGLPSEAMEIYDEMRRSPDPPLSLPFRVILKGLIPYPELRERVKDDFLELFPG 236

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             VYDPPEDLF+DQ+   ES+ D
Sbjct: 237 MIVYDPPEDLFEDQELIKESEDD 259

[Close]

BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Match: B9GG76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28180g PE=4 SV=2)

HSP 1 Score: 332.4 bits (851), Expect = 5.100e-88
Identity = 163/203 (80.30%), Postives = 185/203 (91.13%), Query Frame = 1

		  
Query: 71  ISIWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQV 130
           +SIWRRKKE+GKEGL+ AKELKRLQSNP+RL R I SNVSRLLKSDL++VLAEFQRQDQV
Sbjct: 44  LSIWRRKKEMGKEGLMAAKELKRLQSNPVRLDRFITSNVSRLLKSDLLAVLAEFQRQDQV 103

Query: 131 FLSMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGD 190
           FL MKLYDVVRKEIWYRPDMF +RDMLMMLARN+KV+E N+VW DL+REEVLFDQHTFGD
Sbjct: 104 FLCMKLYDVVRKEIWYRPDMFLFRDMLMMLARNKKVDEANQVWRDLRREEVLFDQHTFGD 163

Query: 191 IMRAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPG 250
           I+RAFLDN LP+KAM+IY EMRQSPDPP+SLPFRVILKGLIP+PELRE++KDDFLELFP 
Sbjct: 164 IIRAFLDNGLPSKAMDIYEEMRQSPDPPISLPFRVILKGLIPFPELREEVKDDFLELFPD 223

Query: 251 CSVYDPPEDLFDDQDWETESDTD 274
             VYDP EDLF+DQ+ E + + D
Sbjct: 224 MIVYDPAEDLFEDQEREKDREDD 246

[Close]

BLAST of Spo11929.1 vs. ExPASy Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.500e-82
Identity = 150/194 (77.32%), Postives = 172/194 (88.66%), Query Frame = 1

		  
Query: 80  IGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDV 139
           + KEGLI AKELKRLQ+  +RL R I S+VSRLLKSDLVSVLAEFQRQ+QVFL MKLY+V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 140 VRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDNE 199
           VR+EIWYRPDMFFYRDMLMMLARN+KV+ET +VW DLK+EEVLFDQHTFGD++R FLDNE
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 200 LPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCSVYDPPED 259
           LP +AM +Y EMR+SPD PLSLPFRVILKGL+PYPELREK+KDDFLELFPG  VYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 260 LFDDQDWETESDTD 274
           + +D D E  +D+D
Sbjct: 181 ICEDSDEEARTDSD 194

[Close]

BLAST of Spo11929.1 vs. ExPASy Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.700e-47
Identity = 85/189 (44.97%), Postives = 138/189 (73.02%), Query Frame = 1

		  
Query: 73  IWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFL 132
           +WR KK IGKE L V   LKRL+ +  +L + I+++V RLLK D+++V+ E +RQ++  L
Sbjct: 66  LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETAL 125

Query: 133 SMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIM 192
           ++K+++V++K+ WY+PD+F Y+D+++ LA++++++E   +W  +K+E +  D  T+ +++
Sbjct: 126 AIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVI 185

Query: 193 RAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCS 252
           R FL +  P  AM +Y +M +SPDPP  LPFRV+LKGL+P+P LR K+K DF ELFP   
Sbjct: 186 RGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKH 245

Query: 253 VYDPPEDLF 262
            YDPPE++F
Sbjct: 246 AYDPPEEIF 254

[Close]

BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 306.2 bits (783), Expect = 2.000e-83
Identity = 150/194 (77.32%), Postives = 172/194 (88.66%), Query Frame = 1

		  
Query: 80  IGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDV 139
           + KEGLI AKELKRLQ+  +RL R I S+VSRLLKSDLVSVLAEFQRQ+QVFL MKLY+V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 140 VRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDNE 199
           VR+EIWYRPDMFFYRDMLMMLARN+KV+ET +VW DLK+EEVLFDQHTFGD++R FLDNE
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 200 LPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCSVYDPPED 259
           LP +AM +Y EMR+SPD PLSLPFRVILKGL+PYPELREK+KDDFLELFPG  VYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 260 LFDDQDWETESDTD 274
           + +D D E  +D+D
Sbjct: 181 ICEDSDEEARTDSD 194

[Close]

BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 191.0 bits (484), Expect = 9.400e-49
Identity = 85/189 (44.97%), Postives = 138/189 (73.02%), Query Frame = 1

		  
Query: 73  IWRRKKEIGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFL 132
           +WR KK IGKE L V   LKRL+ +  +L + I+++V RLLK D+++V+ E +RQ++  L
Sbjct: 66  LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETAL 125

Query: 133 SMKLYDVVRKEIWYRPDMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIM 192
           ++K+++V++K+ WY+PD+F Y+D+++ LA++++++E   +W  +K+E +  D  T+ +++
Sbjct: 126 AIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVI 185

Query: 193 RAFLDNELPNKAMEIYAEMRQSPDPPLSLPFRVILKGLIPYPELREKIKDDFLELFPGCS 252
           R FL +  P  AM +Y +M +SPDPP  LPFRV+LKGL+P+P LR K+K DF ELFP   
Sbjct: 186 RGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKH 245

Query: 253 VYDPPEDLF 262
            YDPPE++F
Sbjct: 246 AYDPPEEIF 254

[Close]

BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 84.7 bits (208), Expect = 9.500e-17
Identity = 48/136 (35.29%), Postives = 80/136 (58.82%), Query Frame = 1

		  
Query: 96  SNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDVVRKEIWYRPDMFFYRD 155
           S+   L R I S   RLLK D+V+VL E  RQ++  L++K+++ +RKE WY+P +  Y D
Sbjct: 536 SSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTD 595

Query: 156 MLMMLARNQKVEETNRVWGDLKREEVLFDQ-HTFGDIMRAFLDNELPNKAMEIYAEMRQS 215
           M+ ++A N  +EE N ++  +K E+ L  +   F  ++   L+++L +  M+ YA M+  
Sbjct: 596 MITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSI 655

Query: 216 PDPPLSLPFRVILKGL 231
              P    FRV++ GL
Sbjct: 656 GYEPDRASFRVLVLGL 671

[Close]

BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 59.7 bits (143), Expect = 3.300e-9
Identity = 40/136 (29.41%), Postives = 70/136 (51.47%), Query Frame = 1

		  
Query: 80  IGKEGLIVAKELKRLQSNPLRLQRCIQSNVSRLLKSDLVSVLAEFQRQDQVFLSMKLYDV 139
           +  E +   + LKR     + L   ++  + RL+KSDL+SVL E  RQD   L++ +   
Sbjct: 48  LSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDYCTLAVHVLST 107

Query: 140 VRKEIWYRP-DMFFYRDMLMMLARNQKVEETNRVWGDLKREEVLFDQHTFGDIMRAFLDN 199
           +R E  Y P D+  Y D++  L RN++ +E +R+ G++   +   D      ++RA +  
Sbjct: 108 LRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGA 167

Query: 200 ELPNKAMEIYAEMRQS 215
           E     + +Y  MR+S
Sbjct: 168 ERRESVVRVYTLMRES 180

The following BLAST results are available for this feature:

BLAST of Spo11929.1 vs. NCBI nr
BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
BLAST of Spo11929.1 vs. ExPASy Swiss-Prot
BLAST of Spo11929.1 vs. TAIR (Arabidopsis)

BLAST of Spo11929.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902238291\|gb\|KNA25114.1\|	5.7e-149	99.6	hypothetical protein SOVF_0092...	[more]
gi\|731325932\|ref\|XP_010673765.1\|	8.1e-119	83.3	PREDICTED: pentatricopeptide r...	[more]
gi\|694448964\|ref\|XP_009350240.1\|	1.9e-91	81.7	PREDICTED: pentatricopeptide r...	[more]
gi\|595886826\|ref\|XP_007213347.1\|	5.5e-91	81.2	hypothetical protein PRUPE_ppa...	[more]
gi\|1009114387\|ref\|XP_015873659.1\|	7.1e-91	69.1	PREDICTED: pentatricopeptide r...	[more]

BLAST of Spo11929.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9S1Q9_SPIOL	4.0e-149	99.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8CM64_BETVU	5.6e-119	83.3	Uncharacterized protein OS=Bet...	[more]
M5WMR9_PRUPE	3.8e-91	81.2	Uncharacterized protein OS=Pru...	[more]
A0A059D9X5_EUCGR	1.4e-90	83.2	Uncharacterized protein OS=Euc...	[more]
B9GG76_POPTR	5.1e-88	80.3	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo11929.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
PPR89_ARATH	3.5e-82	77.3	Pentatricopeptide repeat-conta...	[more]
PP266_ARATH	1.7e-47	44.9	Pentatricopeptide repeat-conta...	[more]

BLAST of Spo11929.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4

Position :

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x 1


Match Name	E-value	Identity	Description
AT1G62350.1	2.0e-83	77.3	Pentatricopeptide repeat (PPR)...	[more]
AT3G46870.1	9.4e-49	44.9	Pentatricopeptide repeat (PPR)...	[more]
AT5G09320.1	9.5e-17	35.2	Vacuolar sorting protein 9 (VP...	[more]
AT3G27750.1	3.3e-9	29.4	FUNCTIONS IN: molecular_functi...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 184..218 score: 8.78coord: 149..183 score: 6
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..273 score: 8.9
None	No IPR available	PANTHER	PTHR24015:SF590	SUBFAMILY NOT NAMED	coord: 1..273 score: 8.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0009987	cellular process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0006768	biotin metabolic process
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0005768	endosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0004602	glutathione peroxidase activity
molecular_function	GO:0004077	biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016874	ligase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo12682	0.75	Barchart \| Table
Spo06637	0.71	Barchart \| Table
Spo11688	0.69	Barchart \| Table
Spo01928	0.69	Barchart \| Table
Spo08407	0.69	Barchart \| Table
Spo23332	0.68	Barchart \| Table
Spo10835	0.67	Barchart \| Table
Spo05032	0.67	Barchart \| Table
Spo19288	0.67	Barchart \| Table
Spo23352	0.67	Barchart \| Table
Spo00214	0.66	Barchart \| Table
Spo04123	0.66	Barchart \| Table
Spo13981	0.66	Barchart \| Table
Spo15317	0.66	Barchart \| Table
Spo25196	0.66	Barchart \| Table
Spo06278	0.65	Barchart \| Table
Spo26975	0.65	Barchart \| Table
Spo25985	0.65	Barchart \| Table
Spo08478	0.65	Barchart \| Table