Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTGCTTCAAATACTGCACCTTCTTTTACCATATCATATCATATCAAATCATATCATCTTCTTCATTCTCTTATTCAAAGAATTTTACAGAATAAAATGGCATTTTTAGTAGAAAGAAGTGATCCTCTTCTTCATCTTCATCATCAACATCATCAACATCAAAGCATTCATCAACATCATCATCATCTTAATCCAGAACAGCAACAACAACAGCAACAGGAAATGGTGTTTTCAGTATCAGAATCACAAAAGTCAGTTCCTGCACCTTTCTTAACAAAGACATACCAGCTTGTTGATGATCCTCGTACAGACCACATTGTTTCTTGGGGTGAAGATGAGACTAGTTTTGTTGTTTGGAGGCCTCCTGAGTTTGCTAGAGATCTTCTTCCTAACTACTTCAAACACAACAACTTCTCCAGTTTTGTTAGACAGCTTAACACCTATGTAAGTTTTTTTTCAACTACTAAACACAATTTATTCACATGCATATGTAAATATAATGCTGTATGTGTTACTCGAACTCGAGTTGGTGCATGTGTCGGTTACAGGCTATGTTACTCGGACTCGGGTACCCATGTCGGACACGGGTACGTGTCCGACTCGGCAAAAAATTTATGATTTTGGTTCAAAGTGAAGTGTCCAGTGTCTGTAATCATGTTCGAGTGTCGAGAATCTGACACGGGTACTTGAGGTAAAAATGAAGAGTCCTAGTAATTACCTAGTAACATAGGTTACCGGTACATGTTCATTGTTCAAGTGTCGGACTTGGCTATATTGTGAAATGTGTTCATGCTTTTGGTCCAATGAAGTGTTAAGTAGTGTCCGTGTCCATATTTATGTCGGAGTGTCAAGATTTTTGACACGGGTATTTGAGGTGAAATGAGGTGAACGAGTAACAAGCATATGTTATGAGATCATATTGGATTTAGTCACTTTATTGGTTGTTTGACTTGTTAAGAAGCATTCCTAGTTCATGCAGTGTTTCAAGAGAAACAAAAAGCTGTGGAAATGTGAATTACCATGTTTCTTGAACTCTGATGGAATCTTTGAAACATATATCAAAGCATTTGATCAAACTTTCAAGGATTTAGATTCAGTTTCTTTTAGGGTTTTGTCTTTTTTCATCTGTTTTTTATCTCAGTCTAATTTGGAGTCTCCATTTGTCTTGTTGCATCCTAATTATATATTAAGATAAACGGTAAAGTAAAATGAAGAGTCTGAGTAATATCGGAAATTAAAAAGATCAATAAAACTAGTAAAATAAGTCTTGCATATGCTTTTACACCAACATTTTATTTAGAAAGGCCTTAAATTTAAGACTTTAGGTTCATTTCAAAGTGTGAAAAGTGGTGATCATAGTTTGAAAACCTTAAATTTTAGGCATAGTGCATTTTTTTTTTTAGATTTTAATTCTCTTTTCAACCAAACTCAACTTGGTTAATTTATTTCCCAAGGGAATAATTGTTCTATGATTTTGCTCGAATCGATACACGAACGAGCTTGGGGAGAAGGGAGACTTTTGATTCTCTAGGCATTTGGTAAGAAATGTTTGTTGTACATATAGATTTGTGCAACTTAATTAATAACTAATGAGATTTTAATTAAATGTTAATTAATATATATAAACATATACATTCATTATAATTTGAAGCACCATGTGAGTACTGTTAGTAAGATCTCAAGATTCTCTTGCTTCTTTGTCTTGGTGACTGTCCTTTTATGCATCTGTATCTTATCCCCTCTTAATATTATTCTACGTACTATAACTTTCTGTTATTAGTATATGCACATTTTTATTCTTTATTTTTCTCTTGACTCTTCAATGAAGTATATCCATGTTCAACTTTAATACACCACAATGTGATAATCTATGTGAAGGACTTCAGGGTTACATTTAGACTCAGGCCGTTCTCTTAGCCTGTTATGGTCTGGTTTGGTTTGATCTGATTCTTCTTGGTCTGGTCTGGTGTGGTATGAATTTTCTGGTCTTGTCTAGTGTGGTTTGGTGTGGTATGATTTTTCTAGTTTTTGGTCTGATCTGATTCTTCTTGGTTTGGTCTAGTGTAGTTTGGATTTTTCTAGTCTTGTCTGGGTTAATTTGAATGTTTCTGTGGGTGTTTTTTTACTTTTCTGGTCTGGTCTGATCTGGTCTGGTCTAGTCTGGTATGATTTTCACAAAAATAATCACTAATGAGCGATAAGAATAAGGCAAAGTAAACATAGCCTCACTTGTCACATTTGTGAATTAAATTCCACAATCATGATAGTATAACATTATTTTGCATCATAATTTCTCCTTTTTTCTTTCTTTTACATCAAGTAATTAACATATTTTCCTTCTTTTTTTTTTTTTAATCTTTTAGGGTTTCAAGAAGGTAGTTGCAGATAGGTGGGAGTTTGCAAATGAGTACTTCAAAAAAGGGGAGAAACACCTATTATGTGACATCCATAGAAGAAAAACTCCACAACACCACCACCAAATTCACTACCAAGATCAAGTACTAATCCCACCACATTACCTCCCTTCTTCACCGCCGCCCGACGAAAGCGGTGGTTCTTGGATAAACATTGATCACCACCACCACCACCATCAGTCGTCTTCTCCGTTACCGTCACCCAAACCCACCACCACCGGCGGAGGCGGTCCTAACACCGACATCCTAACGGCGTTAACGGAAGACAACCAAAGGCTAAGGAAGAGGAACTTCATGCTAGTATCTGAACTCAACCACATGAAAACCCTATACAATGACATTATCTACTTTATCCAAAACCATGTTAAACCAGCTGCTCCTAATAGTAGTAATGGAAATGACCAAAATCGCCCTCCTAATAATAATAATAATAACTACAATGCCATGGCTGCAGCTCAACCTAAGCTCATAGAGTTGGATAATGATGATCGAGATAATCACGGCGGCGGCGGTGGCGATTCGAGTAATAATAGAGAGACTATTAAGCTGTTTGGAGTCCCTCTTCATAGCAAGAAGAGATTGCACTTAGCTAGCTGATTAAGGAAACTAATTAGTAATTAATTAGTACTATGTTAATTAAGCACTGTTATTTTAGCTAGATTGGCTAGGTTTTTAACTTAGTAGAGTTTTTTCTCATTTTTAATTTTGTAAGATCCATCAGATGTGAAGTTTTGGTTAATTACATAAAAGAAGTGCTTAATTAAGTTCATCATCATTTTCATGGATTAGTTAGTACTCCTATGTTACTCAAACTCGACACACG TTCTGCTTCAAATACTGCACCTTCTTTTACCATATCATATCATATCAAATCATATCATCTTCTTCATTCTCTTATTCAAAGAATTTTACAGAATAAAATGGCATTTTTAGTAGAAAGAAGTGATCCTCTTCTTCATCTTCATCATCAACATCATCAACATCAAAGCATTCATCAACATCATCATCATCTTAATCCAGAACAGCAACAACAACAGCAACAGGAAATGGTGTTTTCAGTATCAGAATCACAAAAGTCAGTTCCTGCACCTTTCTTAACAAAGACATACCAGCTTGTTGATGATCCTCGTACAGACCACATTGTTTCTTGGGGTGAAGATGAGACTAGTTTTGTTGTTTGGAGGCCTCCTGAGTTTGCTAGAGATCTTCTTCCTAACTACTTCAAACACAACAACTTCTCCAGTTTTGTTAGACAGCTTAACACCTATGGTTTCAAGAAGGTAGTTGCAGATAGGTGGGAGTTTGCAAATGAGTACTTCAAAAAAGGGGAGAAACACCTATTATGTGACATCCATAGAAGAAAAACTCCACAACACCACCACCAAATTCACTACCAAGATCAAGTACTAATCCCACCACATTACCTCCCTTCTTCACCGCCGCCCGACGAAAGCGGTGGTTCTTGGATAAACATTGATCACCACCACCACCACCATCAGTCGTCTTCTCCGTTACCGTCACCCAAACCCACCACCACCGGCGGAGGCGGTCCTAACACCGACATCCTAACGGCGTTAACGGAAGACAACCAAAGGCTAAGGAAGAGGAACTTCATGCTAGTATCTGAACTCAACCACATGAAAACCCTATACAATGACATTATCTACTTTATCCAAAACCATGTTAAACCAGCTGCTCCTAATAGTAGTAATGGAAATGACCAAAATCGCCCTCCTAATAATAATAATAATAACTACAATGCCATGGCTGCAGCTCAACCTAAGCTCATAGAGTTGGATAATGATGATCGAGATAATCACGGCGGCGGCGGTGGCGATTCGAGTAATAATAGAGAGACTATTAAGCTGTTTGGAGTCCCTCTTCATAGCAAGAAGAGATTGCACTTAGCTAGCTGATTAAGGAAACTAATTAGTAATTAATTAGTACTATGTTAATTAAGCACTGTTATTTTAGCTAGATTGGCTAGGTTTTTAACTTAGTAGAGTTTTTTCTCATTTTTAATTTTGTAAGATCCATCAGATGTGAAGTTTTGGTTAATTACATAAAAGAAGTGCTTAATTAAGTTCATCATCATTTTCATGGATTAGTTAGTACTCCTATGTTACTCAAACTCGACACACG ATGGCATTTTTAGTAGAAAGAAGTGATCCTCTTCTTCATCTTCATCATCAACATCATCAACATCAAAGCATTCATCAACATCATCATCATCTTAATCCAGAACAGCAACAACAACAGCAACAGGAAATGGTGTTTTCAGTATCAGAATCACAAAAGTCAGTTCCTGCACCTTTCTTAACAAAGACATACCAGCTTGTTGATGATCCTCGTACAGACCACATTGTTTCTTGGGGTGAAGATGAGACTAGTTTTGTTGTTTGGAGGCCTCCTGAGTTTGCTAGAGATCTTCTTCCTAACTACTTCAAACACAACAACTTCTCCAGTTTTGTTAGACAGCTTAACACCTATGGTTTCAAGAAGGTAGTTGCAGATAGGTGGGAGTTTGCAAATGAGTACTTCAAAAAAGGGGAGAAACACCTATTATGTGACATCCATAGAAGAAAAACTCCACAACACCACCACCAAATTCACTACCAAGATCAAGTACTAATCCCACCACATTACCTCCCTTCTTCACCGCCGCCCGACGAAAGCGGTGGTTCTTGGATAAACATTGATCACCACCACCACCACCATCAGTCGTCTTCTCCGTTACCGTCACCCAAACCCACCACCACCGGCGGAGGCGGTCCTAACACCGACATCCTAACGGCGTTAACGGAAGACAACCAAAGGCTAAGGAAGAGGAACTTCATGCTAGTATCTGAACTCAACCACATGAAAACCCTATACAATGACATTATCTACTTTATCCAAAACCATGTTAAACCAGCTGCTCCTAATAGTAGTAATGGAAATGACCAAAATCGCCCTCCTAATAATAATAATAATAACTACAATGCCATGGCTGCAGCTCAACCTAAGCTCATAGAGTTGGATAATGATGATCGAGATAATCACGGCGGCGGCGGTGGCGATTCGAGTAATAATAGAGAGACTATTAAGCTGTTTGGAGTCCCTCTTCATAGCAAGAAGAGATTGCACTTAGCTAGCTGA MAFLVERSDPLLHLHHQHHQHQSIHQHHHHLNPEQQQQQQQEMVFSVSESQKSVPAPFLTKTYQLVDDPRTDHIVSWGEDETSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGEKHLLCDIHRRKTPQHHHQIHYQDQVLIPPHYLPSSPPPDESGGSWINIDHHHHHHQSSSPLPSPKPTTTGGGGPNTDILTALTEDNQRLRKRNFMLVSELNHMKTLYNDIIYFIQNHVKPAAPNSSNGNDQNRPPNNNNNNYNAMAAAQPKLIELDNDDRDNHGGGGGDSSNNRETIKLFGVPLHSKKRLHLAS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11935.1 vs. NCBI nr
Match: gi|902164204|gb|KNA06943.1| (hypothetical protein SOVF_176410 [Spinacia oleracea]) HSP 1 Score: 680.2 bits (1754), Expect = 1.700e-192 Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1
BLAST of Spo11935.1 vs. NCBI nr
Match: gi|731325959|ref|XP_010673780.1| (PREDICTED: heat stress transcription factor B-4-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 473.8 bits (1218), Expect = 2.500e-130 Identity = 251/330 (76.06%), Postives = 268/330 (81.21%), Query Frame = 1
BLAST of Spo11935.1 vs. NCBI nr
Match: gi|870863456|gb|KMT14620.1| (hypothetical protein BVRB_4g073880 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 445.7 bits (1145), Expect = 7.300e-122 Identity = 228/288 (79.17%), Postives = 243/288 (84.38%), Query Frame = 1
BLAST of Spo11935.1 vs. NCBI nr
Match: gi|225435854|ref|XP_002265293.1| (PREDICTED: heat stress transcription factor B-4b [Vitis vinifera]) HSP 1 Score: 319.7 bits (818), Expect = 6.000e-84 Identity = 179/306 (58.50%), Postives = 204/306 (66.67%), Query Frame = 1
BLAST of Spo11935.1 vs. NCBI nr
Match: gi|357493861|ref|XP_003617219.1| (heat shock transcription factor [Medicago truncatula]) HSP 1 Score: 319.3 bits (817), Expect = 7.800e-84 Identity = 176/289 (60.90%), Postives = 201/289 (69.55%), Query Frame = 1
BLAST of Spo11935.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJR5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_176410 PE=3 SV=1) HSP 1 Score: 680.2 bits (1754), Expect = 1.200e-192 Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1
BLAST of Spo11935.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLK7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g073880 PE=3 SV=1) HSP 1 Score: 445.7 bits (1145), Expect = 5.100e-122 Identity = 228/288 (79.17%), Postives = 243/288 (84.38%), Query Frame = 1
BLAST of Spo11935.1 vs. UniProtKB/TrEMBL
Match: D7T193_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g02730 PE=3 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 4.200e-84 Identity = 179/306 (58.50%), Postives = 204/306 (66.67%), Query Frame = 1
BLAST of Spo11935.1 vs. UniProtKB/TrEMBL
Match: G7KCV7_MEDTR (Heat shock transcription factor OS=Medicago truncatula GN=MTR_5g089170 PE=3 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 5.500e-84 Identity = 176/289 (60.90%), Postives = 201/289 (69.55%), Query Frame = 1
BLAST of Spo11935.1 vs. UniProtKB/TrEMBL
Match: A0A151SI68_CAJCA (Heat stress transcription factor B-4 OS=Cajanus cajan GN=KK1_000680 PE=3 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 1.200e-83 Identity = 176/303 (58.09%), Postives = 205/303 (67.66%), Query Frame = 1
BLAST of Spo11935.1 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=1 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 1.100e-74 Identity = 159/296 (53.72%), Postives = 188/296 (63.51%), Query Frame = 1
BLAST of Spo11935.1 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 1.400e-72 Identity = 161/302 (53.31%), Postives = 193/302 (63.91%), Query Frame = 1
BLAST of Spo11935.1 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=3 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 1.300e-67 Identity = 151/289 (52.25%), Postives = 181/289 (62.63%), Query Frame = 1
BLAST of Spo11935.1 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 1.100e-58 Identity = 146/328 (44.51%), Postives = 182/328 (55.49%), Query Frame = 1
BLAST of Spo11935.1 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 6.100e-52 Identity = 143/352 (40.62%), Postives = 185/352 (52.56%), Query Frame = 1
BLAST of Spo11935.1 vs. TAIR (Arabidopsis)
Match: AT1G46264.1 (heat shock transcription factor B4) HSP 1 Score: 274.6 bits (701), Expect = 7.800e-74 Identity = 161/302 (53.31%), Postives = 193/302 (63.91%), Query Frame = 1
BLAST of Spo11935.1 vs. TAIR (Arabidopsis)
Match: AT5G62020.1 (heat shock transcription factor B2A) HSP 1 Score: 181.8 bits (460), Expect = 6.900e-46 Identity = 103/238 (43.28%), Postives = 147/238 (61.76%), Query Frame = 1
BLAST of Spo11935.1 vs. TAIR (Arabidopsis)
Match: AT4G36990.1 (heat shock factor 4) HSP 1 Score: 175.3 bits (443), Expect = 6.400e-44 Identity = 111/282 (39.36%), Postives = 156/282 (55.32%), Query Frame = 1
BLAST of Spo11935.1 vs. TAIR (Arabidopsis)
Match: AT4G11660.1 (winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 172.2 bits (435), Expect = 5.500e-43 Identity = 104/222 (46.85%), Postives = 128/222 (57.66%), Query Frame = 1
BLAST of Spo11935.1 vs. TAIR (Arabidopsis)
Match: AT2G41690.1 (heat shock transcription factor B3) HSP 1 Score: 158.3 bits (399), Expect = 8.200e-39 Identity = 91/227 (40.09%), Postives = 136/227 (59.91%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11935.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11935.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11935.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo11935.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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