Spo11939 (gene) | SpinachBase

Overview


Name	Spo11939
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ethylene-responsive transcription factor 2
Location	chr4 : 8045239 .. 8045931 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCATTATTAGCGCCGGACACGGCCACCGCCTTACAACTCATCGAAAACCACCTCTTCGACGACCAACTCCACTCCCGGGCCTCCACATTAACCACCAATGACCACCTAATAAGCTCAAAATCATCACTATTCAGCGGCGGATCAACAACCTTCAATATTTCCTTCAGTACTACTAGTATTAGTAGTACTGAAGGTCTTTGTCATGATGACACTCGTGATCTCTTACAATACATTTACTCGTCCCTGGACGAGGAAGGAGTTGATTATGATGAAACCTTTCGTATCTTCAGCAGCCAGCAGCTGCCGCAAAAAGTTGATGAGAGACAAAATAACAACAATAATAATAGTAATAGTAATAGTAACGGGAATTATATAGGGGTGAGGAGAAGGCCATGGGGTAGATTTGCGGCGGAAATCCGAGATCCGACCCGTAAAGGCTATCGGATCTGGCTCGGTACGTATAACACGGCTATCGAAGCTGCCCGGGCGTACGACCGGGCAGCTTTCGATATTCGAGGTAATAAAGCTAGACTTAACTTCCCTCATGAAGTTGAGTCTTGGTCTTCATCATCCAAAAGAAGAAGAACTAATGATCATGAAAAAGTGCAACAAATTGGTGAGAAACGGCAAAGGGTTGATGATGGTGGTGAGAGAGAATTATTATTGGAAAGTTATTGTTCTAATTAA

mRNA sequence

ATGGAATCATTATTAGCGCCGGACACGGCCACCGCCTTACAACTCATCGAAAACCACCTCTTCGACGACCAACTCCACTCCCGGGCCTCCACATTAACCACCAATGACCACCTAATAAGCTCAAAATCATCACTATTCAGCGGCGGATCAACAACCTTCAATATTTCCTTCAGTACTACTAGTATTAGTAGTACTGAAGGTCTTTGTCATGATGACACTCGTGATCTCTTACAATACATTTACTCGTCCCTGGACGAGGAAGGAGTTGATTATGATGAAACCTTTCGTATCTTCAGCAGCCAGCAGCTGCCGCAAAAAGTTGATGAGAGACAAAATAACAACAATAATAATAGTAATAGTAATAGTAACGGGAATTATATAGGGGTGAGGAGAAGGCCATGGGGTAGATTTGCGGCGGAAATCCGAGATCCGACCCGTAAAGGCTATCGGATCTGGCTCGGTACGTATAACACGGCTATCGAAGCTGCCCGGGCGTACGACCGGGCAGCTTTCGATATTCGAGGTAATAAAGCTAGACTTAACTTCCCTCATGAAGTTGAGTCTTGGTCTTCATCATCCAAAAGAAGAAGAACTAATGATCATGAAAAAGTGCAACAAATTGGTGAGAAACGGCAAAGGGTTGATGATGGTGGTGAGAGAGAATTATTATTGGAAAGTTATTGTTCTAATTAA

Coding sequence (CDS)

ATGGAATCATTATTAGCGCCGGACACGGCCACCGCCTTACAACTCATCGAAAACCACCTCTTCGACGACCAACTCCACTCCCGGGCCTCCACATTAACCACCAATGACCACCTAATAAGCTCAAAATCATCACTATTCAGCGGCGGATCAACAACCTTCAATATTTCCTTCAGTACTACTAGTATTAGTAGTACTGAAGGTCTTTGTCATGATGACACTCGTGATCTCTTACAATACATTTACTCGTCCCTGGACGAGGAAGGAGTTGATTATGATGAAACCTTTCGTATCTTCAGCAGCCAGCAGCTGCCGCAAAAAGTTGATGAGAGACAAAATAACAACAATAATAATAGTAATAGTAATAGTAACGGGAATTATATAGGGGTGAGGAGAAGGCCATGGGGTAGATTTGCGGCGGAAATCCGAGATCCGACCCGTAAAGGCTATCGGATCTGGCTCGGTACGTATAACACGGCTATCGAAGCTGCCCGGGCGTACGACCGGGCAGCTTTCGATATTCGAGGTAATAAAGCTAGACTTAACTTCCCTCATGAAGTTGAGTCTTGGTCTTCATCATCCAAAAGAAGAAGAACTAATGATCATGAAAAAGTGCAACAAATTGGTGAGAAACGGCAAAGGGTTGATGATGGTGGTGAGAGAGAATTATTATTGGAAAGTTATTGTTCTAATTAA

Protein sequence

MESLLAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGSTTFNISFSTTSISSTEGLCHDDTRDLLQYIYSSLDEEGVDYDETFRIFSSQQLPQKVDERQNNNNNNSNSNSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLESYCSN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11939.1	Spo11939.1	mRNA

Homology

[Close]

BLAST of Spo11939.1 vs. NCBI nr
Match: gi|902219810|gb|KNA18411.1| (hypothetical protein SOVF_071040 [Spinacia oleracea])

HSP 1 Score: 437.6 bits (1124), Expect = 1.400e-119
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 1

		  
Query: 1   MESLLAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGSTTFNISFSTT 60
           MESLLAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGSTTFNISFSTT
Sbjct: 1   MESLLAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGSTTFNISFSTT 60

Query: 61  SISSTEGLCHDDTRDLLQYIYSSLDEEGVDYDETFRIFSSQQLPQKVDERQNNNNNNSNS 120
           SISSTEGLCHDDTRDLLQYIYSSL+EE VDYDETFRIFSSQQLPQKVDERQNNNNNN NS
Sbjct: 61  SISSTEGLCHDDTRDLLQYIYSSLNEESVDYDETFRIFSSQQLPQKVDERQNNNNNN-NS 120

Query: 121 NSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARL 180
           NSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARL
Sbjct: 121 NSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARL 180

Query: 181 NFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLESYCSN 231
           NFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLESYCSN
Sbjct: 181 NFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLESYCSN 229

[Close]

BLAST of Spo11939.1 vs. NCBI nr
Match: gi|731326394|ref|XP_010673999.1| (PREDICTED: ethylene-responsive transcription factor ERF107-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 239.6 bits (610), Expect = 5.500e-60
Identity = 143/235 (60.85%), Postives = 171/235 (72.77%), Query Frame = 1

		  
Query: 5   LAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGS-------TTFNISF 64
           LAPDTATAL LIE HLFDDQ+ S  ST+TT    +SSKSS  +          TTFN+ F
Sbjct: 4   LAPDTATALNLIEKHLFDDQIPSPTSTITTT---LSSKSSFTTNQYSQNNTKVTTFNLCF 63

Query: 65  STTSISSTEGLCHDDTRDLLQYIYSSLDEEGVDYDETFRIFSSQ--QLPQKVDERQNNNN 124
           S    ++ EG  HDD+ ++LQYIYSSL+E G+DYDETFR+F S+  +   K D + NNNN
Sbjct: 64  S----NNNEGTRHDDS-NILQYIYSSLEEAGIDYDETFRVFCSKPRKAATKGDMKHNNNN 123

Query: 125 NNSNSNSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRG 184
           N+      GNYIGVRRRPWGRFAAEIRDP RKGYRIWLGTYNTAI+AARAYDRAAFD+RG
Sbjct: 124 NH------GNYIGVRRRPWGRFAAEIRDPKRKGYRIWLGTYNTAIDAARAYDRAAFDMRG 183

Query: 185 NKARLNFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLESYCSN 231
           NKARLNFPHEV SWSSSS +       ++Q IGEKRQR+++  +   +L  YCS+
Sbjct: 184 NKARLNFPHEVGSWSSSSTKT-----TQMQLIGEKRQRIEE--DEIDMLGDYCSS 217

[Close]

BLAST of Spo11939.1 vs. NCBI nr
Match: gi|731326396|ref|XP_010674000.1| (PREDICTED: ethylene-responsive transcription factor ERF107-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 201.1 bits (510), Expect = 2.200e-48
Identity = 128/227 (56.39%), Postives = 150/227 (66.08%), Query Frame = 1

		  
Query: 1   MESLLAPDTATALQLIENHLFDDQLHSRASTLTTN--DHLISSKSSLFSGGS-----TTF 60
           ME LL P+T  ALQ IE HLF+D     +   TTN      S  S L+   +     TTF
Sbjct: 1   MEPLL-PNTIAALQDIEQHLFEDYHLPLSPISTTNFDSTTPSFTSQLYPQNNNNAKVTTF 60

Query: 61  NISFSTTSISSTEGLCHDDTRDLLQYIYSSLDEEGVDYDETFRIFSSQQLPQKVDERQNN 120
            ISFS       E  CH +   LL+YIYSSL+++G+DYDETFRIF S+  PQKV  +   
Sbjct: 61  TISFSN------EDRCHSNNDPLLEYIYSSLEDQGIDYDETFRIFCSKP-PQKVATKYEA 120

Query: 121 NNNNSNSNSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDI 180
           ++NN+ +N    YIGVRRRPWGRFAAEIRDP RKGYRIWLGTYN AI+AARAYDRAAFDI
Sbjct: 121 SHNNNQAN----YIGVRRRPWGRFAAEIRDPKRKGYRIWLGTYNKAIDAARAYDRAAFDI 180

Query: 181 RGNKARLNFPHEVESWSSSSKRRRTNDHE----KVQQIGEKRQRVDD 217
           RGNKARLNFPHEV SWSSSS    ++       +V   G+KR R DD
Sbjct: 181 RGNKARLNFPHEVGSWSSSSSSSSSSSSSSKTTQVHHAGDKRLRNDD 215

[Close]

BLAST of Spo11939.1 vs. NCBI nr
Match: gi|225455026|ref|XP_002281912.1| (PREDICTED: ethylene-responsive transcription factor ERF105 [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 3.500e-22
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 1

		  
Query: 118 SNSNSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNK 177
           S+S    +Y GVRRRPWG+FAAEIRDP R+G R+WLGT+ TAIEAARAYDRAAF++RG+K
Sbjct: 112 SDSGDIRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFEMRGSK 171

Query: 178 ARLNFPHEVESWSSSS-------KRRRTNDHEKVQQI 208
           A LNFP E ++WS S        KR R ++ E+ QQ+
Sbjct: 172 AILNFPLEADNWSGSDPPAISGRKRERDSETEERQQV 208

[Close]

BLAST of Spo11939.1 vs. NCBI nr
Match: gi|823152041|ref|XP_012475851.1| (PREDICTED: ethylene-responsive transcription factor 5-like [Gossypium raimondii])

HSP 1 Score: 114.0 bits (284), Expect = 3.500e-22
Identity = 61/100 (61.00%), Postives = 79/100 (79.00%), Query Frame = 1

		  
Query: 118 SNSNSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNK 177
           SNS  N +Y GVR+RPWG+FAAEIRDPTR+G RIWLGT++TAIEAA+AYDRAAF +RG+K
Sbjct: 175 SNSEDNRHYRGVRQRPWGKFAAEIRDPTRRGSRIWLGTFDTAIEAAKAYDRAAFKLRGSK 234

Query: 178 ARLNFPHE---VESWSSSSKRRRTNDHEKVQQIGEKRQRV 215
           A LNFP E   +ES +S  +R+R+ D+ + +   EKR +V
Sbjct: 235 AILNFPLEAGKLESGASDGERKRSRDNSEGE---EKRAKV 271

[Close]

BLAST of Spo11939.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFZ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071040 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 9.600e-120
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 1

		  
Query: 1   MESLLAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGSTTFNISFSTT 60
           MESLLAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGSTTFNISFSTT
Sbjct: 1   MESLLAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGSTTFNISFSTT 60

Query: 61  SISSTEGLCHDDTRDLLQYIYSSLDEEGVDYDETFRIFSSQQLPQKVDERQNNNNNNSNS 120
           SISSTEGLCHDDTRDLLQYIYSSL+EE VDYDETFRIFSSQQLPQKVDERQNNNNNN NS
Sbjct: 61  SISSTEGLCHDDTRDLLQYIYSSLNEESVDYDETFRIFSSQQLPQKVDERQNNNNNN-NS 120

Query: 121 NSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARL 180
           NSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARL
Sbjct: 121 NSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARL 180

Query: 181 NFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLESYCSN 231
           NFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLESYCSN
Sbjct: 181 NFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLESYCSN 229

[Close]

BLAST of Spo11939.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRL5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g073910 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.800e-60
Identity = 143/235 (60.85%), Postives = 171/235 (72.77%), Query Frame = 1

		  
Query: 5   LAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGS-------TTFNISF 64
           LAPDTATAL LIE HLFDDQ+ S  ST+TT    +SSKSS  +          TTFN+ F
Sbjct: 4   LAPDTATALNLIEKHLFDDQIPSPTSTITTT---LSSKSSFTTNQYSQNNTKVTTFNLCF 63

Query: 65  STTSISSTEGLCHDDTRDLLQYIYSSLDEEGVDYDETFRIFSSQ--QLPQKVDERQNNNN 124
           S    ++ EG  HDD+ ++LQYIYSSL+E G+DYDETFR+F S+  +   K D + NNNN
Sbjct: 64  S----NNNEGTRHDDS-NILQYIYSSLEEAGIDYDETFRVFCSKPRKAATKGDMKHNNNN 123

Query: 125 NNSNSNSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRG 184
           N+      GNYIGVRRRPWGRFAAEIRDP RKGYRIWLGTYNTAI+AARAYDRAAFD+RG
Sbjct: 124 NH------GNYIGVRRRPWGRFAAEIRDPKRKGYRIWLGTYNTAIDAARAYDRAAFDMRG 183

Query: 185 NKARLNFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLESYCSN 231
           NKARLNFPHEV SWSSSS +       ++Q IGEKRQR+++  +   +L  YCS+
Sbjct: 184 NKARLNFPHEVGSWSSSSTKT-----TQMQLIGEKRQRIEE--DEIDMLGDYCSS 217

[Close]

BLAST of Spo11939.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRI2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g073920 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.500e-48
Identity = 128/227 (56.39%), Postives = 150/227 (66.08%), Query Frame = 1

		  
Query: 1   MESLLAPDTATALQLIENHLFDDQLHSRASTLTTN--DHLISSKSSLFSGGS-----TTF 60
           ME LL P+T  ALQ IE HLF+D     +   TTN      S  S L+   +     TTF
Sbjct: 1   MEPLL-PNTIAALQDIEQHLFEDYHLPLSPISTTNFDSTTPSFTSQLYPQNNNNAKVTTF 60

Query: 61  NISFSTTSISSTEGLCHDDTRDLLQYIYSSLDEEGVDYDETFRIFSSQQLPQKVDERQNN 120
            ISFS       E  CH +   LL+YIYSSL+++G+DYDETFRIF S+  PQKV  +   
Sbjct: 61  TISFSN------EDRCHSNNDPLLEYIYSSLEDQGIDYDETFRIFCSKP-PQKVATKYEA 120

Query: 121 NNNNSNSNSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDI 180
           ++NN+ +N    YIGVRRRPWGRFAAEIRDP RKGYRIWLGTYN AI+AARAYDRAAFDI
Sbjct: 121 SHNNNQAN----YIGVRRRPWGRFAAEIRDPKRKGYRIWLGTYNKAIDAARAYDRAAFDI 180

Query: 181 RGNKARLNFPHEVESWSSSSKRRRTNDHE----KVQQIGEKRQRVDD 217
           RGNKARLNFPHEV SWSSSS    ++       +V   G+KR R DD
Sbjct: 181 RGNKARLNFPHEVGSWSSSSSSSSSSSSSSKTTQVHHAGDKRLRNDD 215

[Close]

BLAST of Spo11939.1 vs. UniProtKB/TrEMBL
Match: D7U785_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0013g00980 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.400e-22
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 1

		  
Query: 118 SNSNSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNK 177
           S+S    +Y GVRRRPWG+FAAEIRDP R+G R+WLGT+ TAIEAARAYDRAAF++RG+K
Sbjct: 112 SDSGDIRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFEMRGSK 171

Query: 178 ARLNFPHEVESWSSSS-------KRRRTNDHEKVQQI 208
           A LNFP E ++WS S        KR R ++ E+ QQ+
Sbjct: 172 AILNFPLEADNWSGSDPPAISGRKRERDSETEERQQV 208

[Close]

BLAST of Spo11939.1 vs. UniProtKB/TrEMBL
Match: D7U782_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0013g00950 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.400e-22
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 1

		  
Query: 118 SNSNSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNK 177
           S+S    +Y GVRRRPWG+FAAEIRDP R+G R+WLGT+ TAIEAARAYDRAAF++RG+K
Sbjct: 112 SDSGDIRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFEMRGSK 171

Query: 178 ARLNFPHEVESWSSSS-------KRRRTNDHEKVQQI 208
           A LNFP E ++WS S        KR R ++ E+ QQ+
Sbjct: 172 AILNFPLEADNWSGSDPPAISGRKRERDSETEERQQV 208

[Close]

BLAST of Spo11939.1 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 2.700e-22
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1

		  
Query: 125 NYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPH 184
           +Y GVR RPWG+FAAEIRDPTR+G R+WLGT+ TAIEAARAYD+ AF +RG+KA LNFP 
Sbjct: 136 HYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPL 195

Query: 185 EVESWSSS--------SKRRRTNDHEKV 205
           EV+ W+          +KR+R  + E+V
Sbjct: 196 EVDKWNPRAEDGRGLYNKRKRDGEEEEV 223

[Close]

BLAST of Spo11939.1 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.300e-21
Identity = 52/101 (51.49%), Postives = 74/101 (73.27%), Query Frame = 1

		  
Query: 125 NYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPH 184
           +Y GVR+RPWG+FAAEIRDP RKG R+WLGT++TAIEAA+AYDRAAF +RG+KA +NFP 
Sbjct: 144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPL 203

Query: 185 EVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELLLE 226
           EV ++       +  D+E +Q     R+R+ +    E++++
Sbjct: 204 EVANF-------KQQDNEILQPANSGRKRMRETENEEIVIK 237

[Close]

BLAST of Spo11939.1 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.000e-21
Identity = 91/262 (34.73%), Postives = 130/262 (49.62%), Query Frame = 1

		  
Query: 4   LLAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGSTTFNISFSTTS-- 63
           +  P+  +AL  IE HL D+     AS + T+  +    SS     S + +I F ++S  
Sbjct: 1   MATPNEVSALWFIEKHLLDE-----ASPVATDPWMKHESSSATESSSDSSSIIFGSSSSS 60

Query: 64  ---ISSTEGLCHDDTRDL-----LQY--IYSSLDEEGVDYDETFRIFSSQQ--------- 123
              I  +E +C  +  DL     +++  I    D E    D  F+  +  Q         
Sbjct: 61  FAPIDFSESVCKPEIIDLDTPRSMEFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKS 120

Query: 124 ----------LPQKVDERQNNNNNNS-------NSNSNGNYIGVRRRPWGRFAAEIRDPT 183
                     LP K +  Q    N         +     +Y GVR+RPWG+FAAEIRDP 
Sbjct: 121 QIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPN 180

Query: 184 RKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPHEVESW----SSSSKRRRTNDH 220
           ++G R+WLGT++TAIEAARAYD AAF +RG+KA LNFP EV  W        K+R+ +D 
Sbjct: 181 KRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGEKKRKRDDD 240

[Close]

BLAST of Spo11939.1 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.100e-20
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1

		  
Query: 125 NYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPH 184
           +Y GVRRRPWG++AAEIRDP +KG RIWLGTY+TA+EA RAYD+AAF +RG KA LNFP 
Sbjct: 87  HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPL 146

Query: 185 EVESWSSS 193
           +V   S +
Sbjct: 147 DVRVTSET 154

[Close]

BLAST of Spo11939.1 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.500e-20
Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = 1

		  
Query: 125 NYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPH 184
           +Y GVRRRPWG+FAAEIRDP +KG RIWLGT+ + ++AARAYD AAF +RG KA LNFP 
Sbjct: 109 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPL 168

Query: 185 EVESW----SSSSKRRRTNDHEKVQQ 207
           +   +    +S  KR+R++ HE++Q+
Sbjct: 169 DAGKYEAPANSGRKRKRSDVHEELQR 194

[Close]

BLAST of Spo11939.1 vs. TAIR (Arabidopsis)
Match: AT4G17490.1 (ethylene responsive element binding factor 6)

HSP 1 Score: 107.1 bits (266), Expect = 1.500e-23
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1

		  
Query: 125 NYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPH 184
           +Y GVR RPWG+FAAEIRDPTR+G R+WLGT+ TAIEAARAYD+ AF +RG+KA LNFP 
Sbjct: 136 HYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPL 195

Query: 185 EVESWSSS--------SKRRRTNDHEKV 205
           EV+ W+          +KR+R  + E+V
Sbjct: 196 EVDKWNPRAEDGRGLYNKRKRDGEEEEV 223

[Close]

BLAST of Spo11939.1 vs. TAIR (Arabidopsis)
Match: AT5G47230.1 (ethylene responsive element binding factor 5)

HSP 1 Score: 102.8 bits (255), Expect = 2.800e-22
Identity = 91/262 (34.73%), Postives = 130/262 (49.62%), Query Frame = 1

		  
Query: 4   LLAPDTATALQLIENHLFDDQLHSRASTLTTNDHLISSKSSLFSGGSTTFNISFSTTS-- 63
           +  P+  +AL  IE HL D+     AS + T+  +    SS     S + +I F ++S  
Sbjct: 1   MATPNEVSALWFIEKHLLDE-----ASPVATDPWMKHESSSATESSSDSSSIIFGSSSSS 60

Query: 64  ---ISSTEGLCHDDTRDL-----LQY--IYSSLDEEGVDYDETFRIFSSQQ--------- 123
              I  +E +C  +  DL     +++  I    D E    D  F+  +  Q         
Sbjct: 61  FAPIDFSESVCKPEIIDLDTPRSMEFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKS 120

Query: 124 ----------LPQKVDERQNNNNNNS-------NSNSNGNYIGVRRRPWGRFAAEIRDPT 183
                     LP K +  Q    N         +     +Y GVR+RPWG+FAAEIRDP 
Sbjct: 121 QIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPN 180

Query: 184 RKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPHEVESW----SSSSKRRRTNDH 220
           ++G R+WLGT++TAIEAARAYD AAF +RG+KA LNFP EV  W        K+R+ +D 
Sbjct: 181 KRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGEKKRKRDDD 240

[Close]

BLAST of Spo11939.1 vs. TAIR (Arabidopsis)
Match: AT5G61600.1 (ethylene response factor 104)

HSP 1 Score: 101.7 bits (252), Expect = 6.300e-22
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1

		  
Query: 125 NYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPH 184
           +Y GVRRRPWG++AAEIRDP +KG RIWLGTY+TA+EA RAYD+AAF +RG KA LNFP 
Sbjct: 87  HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPL 146

Query: 185 EVESWSSS 193
           +V   S +
Sbjct: 147 DVRVTSET 154

[Close]

BLAST of Spo11939.1 vs. TAIR (Arabidopsis)
Match: AT5G07580.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.400e-21
Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = 1

		  
Query: 125 NYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARLNFPH 184
           +Y GVRRRPWG+FAAEIRDP +KG RIWLGT+ + ++AARAYD AAF +RG KA LNFP 
Sbjct: 176 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPL 235

Query: 185 EVESW----SSSSKRRRTNDHEKVQQ 207
           +   +    +S  KR+R++ HE++Q+
Sbjct: 236 DAGKYEAPANSGRKRKRSDVHEELQR 261

[Close]

BLAST of Spo11939.1 vs. TAIR (Arabidopsis)
Match: AT5G51190.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 2.400e-21
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1

		  
Query: 121 NSNGNYIGVRRRPWGRFAAEIRDPTRKGYRIWLGTYNTAIEAARAYDRAAFDIRGNKARL 180
           N   +Y GVRRRPWG++AAEIRDP +KG R+WLGT++TA+EAAR YD+AAF +RG+KA L
Sbjct: 67  NDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAIL 126

Query: 181 NFPHEVESWSSSSKRRRTNDHEKVQQIGEKRQRVDDGGERELL 224
           NFP E      + K     D++K   +  KR+R     E +L+
Sbjct: 127 NFPLE------AGKHEDLGDNKKTISLKAKRKRQVTEDESQLI 163

The following BLAST results are available for this feature:

BLAST of Spo11939.1 vs. NCBI nr
BLAST of Spo11939.1 vs. UniProtKB/TrEMBL
BLAST of Spo11939.1 vs. ExPASy Swiss-Prot
BLAST of Spo11939.1 vs. TAIR (Arabidopsis)

BLAST of Spo11939.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902219810\|gb\|KNA18411.1\|	1.4e-119	98.7	hypothetical protein SOVF_0710...	[more]
gi\|731326394\|ref\|XP_010673999.1\|	5.5e-60	60.8	PREDICTED: ethylene-responsive...	[more]
gi\|731326396\|ref\|XP_010674000.1\|	2.2e-48	56.3	PREDICTED: ethylene-responsive...	[more]
gi\|225455026\|ref\|XP_002281912.1\|	3.5e-22	59.7	PREDICTED: ethylene-responsive...	[more]
gi\|823152041\|ref\|XP_012475851.1\|	3.5e-22	61.0	PREDICTED: ethylene-responsive...	[more]

BLAST of Spo11939.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RFZ3_SPIOL	9.6e-120	98.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8CRL5_BETVU	3.8e-60	60.8	Uncharacterized protein OS=Bet...	[more]
A0A0J8CRI2_BETVU	1.5e-48	56.3	Uncharacterized protein OS=Bet...	[more]
D7U785_VITVI	2.4e-22	59.7	Putative uncharacterized prote...	[more]
D7U782_VITVI	2.4e-22	59.7	Putative uncharacterized prote...	[more]

BLAST of Spo11939.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
EF103_ARATH	2.7e-22	59.0	Ethylene-responsive transcript...	[more]
ERF5_TOBAC	1.3e-21	51.4	Ethylene-responsive transcript...	[more]
EF102_ARATH	5.0e-21	34.7	Ethylene-responsive transcript...	[more]
EF104_ARATH	1.1e-20	67.6	Ethylene-responsive transcript...	[more]
EF106_ARATH	2.5e-20	56.9	Ethylene-responsive transcript...	[more]

BLAST of Spo11939.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT4G17490.1	1.5e-23	59.0	ethylene responsive element bi...	[more]
AT5G47230.1	2.8e-22	34.7	ethylene responsive element bi...	[more]
AT5G61600.1	6.3e-22	67.6	ethylene response factor 104	[more]
AT5G07580.1	1.4e-21	56.9	Integrase-type DNA-binding sup...	[more]
AT5G51190.1	2.4e-21	50.4	Integrase-type DNA-binding sup...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 165..185 score: 2.9E-11coord: 126..137 score: 2.9
IPR001471	AP2/ERF domain	GENE3D	3.30.730.10		coord: 125..184 score: 1.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 126..175 score: 7.9
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 125..189 score: 7.6
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 125..183 score: 22
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 126..185 score: 4.71
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 125..188 score: 1.2
None	No IPR available	PANTHER	PTHR31190:SF21	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13	coord: 125..188 score: 1.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009873	ethylene-activated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0002679	respiratory burst involved in defense response
biological_process	GO:0010200	response to chitin
biological_process	GO:0009409	response to cold
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0016491	oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03777	0.73	Barchart \| Table
Spo26380	0.70	Barchart \| Table
Spo27024	0.67	Barchart \| Table
Spo25740	0.66	Barchart \| Table