Spo11977 (gene) | SpinachBase

Overview


Name	Spo11977
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L16, chloroplastic
Location	chr4 : 8791785 .. 8792468 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTAGAGTGATCTCTCAAATCAGAAAACTTCCCCTTGTGAATGCACTGAGGCAGGCTAGCCAGCCATCTGCTACTCCTGGCTCATACAGCTCAAGATGGATCATGCCATCTACTTCTGTGGGTCCCACTTTGAAGAAAACCAGTGGTCTTACTCCTGCAATGGGGTCTCTATTTAGAAATTCGGGCTTAGGATCAGTTACTGCACATCCACGCTCTGGTTTTTCCGCGAGTATTCCAAGTATGTCAGTATCTGTACGCTACAATTCAACATCAGGGATATACGCAAATGTTAGGAAGAGGTTTACTAAAGAACGCAGAAACAGAGGAGAAATAAAGGGGGTTTCGGATAACGTTCTTTCTTTTGGTAAATATGCACTTCAGGCACTCGAACCAGCTTGGATCACATCTAAACAAATCACAGCAGGACAGCTGGCAATCAAGAGGAACATGCGCGGTGGGAAGCTTTTCATGCGTATATTTCCACACAAACCGATTTCTCTAAGGCCCGCTGAAACCCGTATGGGTCGAGGGAAAGGAAACATAGCATTTTGGGTTGCTGGTGTTAAAACTGGTAGAATGATTTATGAAATAAACGGAGTTCCGGAAAGTGTAGCGCGTAAAGCAATCACAGTTGCAGCATCGAAATTTCCTCTGAGAACCAGGTTTGTCAAATGTTAG

mRNA sequence

ATGGCTACTAGAGTGATCTCTCAAATCAGAAAACTTCCCCTTGTGAATGCACTGAGGCAGGCTAGCCAGCCATCTGCTACTCCTGGCTCATACAGCTCAAGATGGATCATGCCATCTACTTCTGTGGGTCCCACTTTGAAGAAAACCAGTGGTCTTACTCCTGCAATGGGGTCTCTATTTAGAAATTCGGGCTTAGGATCAGTTACTGCACATCCACGCTCTGGTTTTTCCGCGAGTATTCCAAGTATGTCAGTATCTGTACGCTACAATTCAACATCAGGGATATACGCAAATGTTAGGAAGAGGTTTACTAAAGAACGCAGAAACAGAGGAGAAATAAAGGGGGTTTCGGATAACGTTCTTTCTTTTGGTAAATATGCACTTCAGGCACTCGAACCAGCTTGGATCACATCTAAACAAATCACAGCAGGACAGCTGGCAATCAAGAGGAACATGCGCGGTGGGAAGCTTTTCATGCGTATATTTCCACACAAACCGATTTCTCTAAGGCCCGCTGAAACCCGTATGGGTCGAGGGAAAGGAAACATAGCATTTTGGGTTGCTGGTGTTAAAACTGGTAGAATGATTTATGAAATAAACGGAGTTCCGGAAAGTGTAGCGCGTAAAGCAATCACAGTTGCAGCATCGAAATTTCCTCTGAGAACCAGGTTTGTCAAATGTTAG

Coding sequence (CDS)

ATGGCTACTAGAGTGATCTCTCAAATCAGAAAACTTCCCCTTGTGAATGCACTGAGGCAGGCTAGCCAGCCATCTGCTACTCCTGGCTCATACAGCTCAAGATGGATCATGCCATCTACTTCTGTGGGTCCCACTTTGAAGAAAACCAGTGGTCTTACTCCTGCAATGGGGTCTCTATTTAGAAATTCGGGCTTAGGATCAGTTACTGCACATCCACGCTCTGGTTTTTCCGCGAGTATTCCAAGTATGTCAGTATCTGTACGCTACAATTCAACATCAGGGATATACGCAAATGTTAGGAAGAGGTTTACTAAAGAACGCAGAAACAGAGGAGAAATAAAGGGGGTTTCGGATAACGTTCTTTCTTTTGGTAAATATGCACTTCAGGCACTCGAACCAGCTTGGATCACATCTAAACAAATCACAGCAGGACAGCTGGCAATCAAGAGGAACATGCGCGGTGGGAAGCTTTTCATGCGTATATTTCCACACAAACCGATTTCTCTAAGGCCCGCTGAAACCCGTATGGGTCGAGGGAAAGGAAACATAGCATTTTGGGTTGCTGGTGTTAAAACTGGTAGAATGATTTATGAAATAAACGGAGTTCCGGAAAGTGTAGCGCGTAAAGCAATCACAGTTGCAGCATCGAAATTTCCTCTGAGAACCAGGTTTGTCAAATGTTAG

Protein sequence

MATRVISQIRKLPLVNALRQASQPSATPGSYSSRWIMPSTSVGPTLKKTSGLTPAMGSLFRNSGLGSVTAHPRSGFSASIPSMSVSVRYNSTSGIYANVRKRFTKERRNRGEIKGVSDNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMRGGKLFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKFPLRTRFVKC

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11977.1	Spo11977.1	mRNA

Homology

[Close]

BLAST of Spo11977.1 vs. NCBI nr
Match: gi|902234962|gb|KNA23664.1| (hypothetical protein SOVF_022900 [Spinacia oleracea])

HSP 1 Score: 440.7 bits (1132), Expect = 1.600e-120
Identity = 226/227 (99.56%), Postives = 226/227 (99.56%), Query Frame = 1

		  
Query: 1   MATRVISQIRKLPLVNALRQASQPSATPGSYSSRWIMPSTSVGPTLKKTSGLTPAMGSLF 60
           MATRVISQIRKLPLVNALRQASQPSATPGSYSSRW MPSTSVGPTLKKTSGLTPAMGSLF
Sbjct: 1   MATRVISQIRKLPLVNALRQASQPSATPGSYSSRWTMPSTSVGPTLKKTSGLTPAMGSLF 60

Query: 61  RNSGLGSVTAHPRSGFSASIPSMSVSVRYNSTSGIYANVRKRFTKERRNRGEIKGVSDNV 120
           RNSGLGSVTAHPRSGFSASIPSMSVSVRYNSTSGIYANVRKRFTKERRNRGEIKGVSDNV
Sbjct: 61  RNSGLGSVTAHPRSGFSASIPSMSVSVRYNSTSGIYANVRKRFTKERRNRGEIKGVSDNV 120

Query: 121 LSFGKYALQALEPAWITSKQITAGQLAIKRNMRGGKLFMRIFPHKPISLRPAETRMGRGK 180
           LSFGKYALQALEPAWITSKQITAGQLAIKRNMRGGKLFMRIFPHKPISLRPAETRMGRGK
Sbjct: 121 LSFGKYALQALEPAWITSKQITAGQLAIKRNMRGGKLFMRIFPHKPISLRPAETRMGRGK 180

Query: 181 GNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKFPLRTRFVKC 228
           GNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKFPLRTRFVKC
Sbjct: 181 GNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKFPLRTRFVKC 227

[Close]

BLAST of Spo11977.1 vs. NCBI nr
Match: gi|870863527|gb|KMT14691.1| (hypothetical protein BVRB_4g074590 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 330.1 bits (845), Expect = 3.000e-87
Identity = 176/243 (72.43%), Postives = 199/243 (81.89%), Query Frame = 1

		  
Query: 1   MATRVISQIRKLPLVNALRQASQPSATP-------------GSYSSRWIMPSTSVGPTLK 60
           MATRV+S IR   L+N LRQAS  S +              GSY S W M      P+L+
Sbjct: 1   MATRVLSHIRNSRLINTLRQASLSSCSSNPVKNAQLSPTSMGSYISGWTMT-----PSLR 60

Query: 61  KTSGLTPAMGSLFRN----SGLGSVTAHPRSGFSASIPSMSVSVRYNSTSGIYANVRKRF 120
           KTS ++PAMG  +RN     GLGSVTA PRSGFS S+P +S+SVRYNSTSG+YANVRKRF
Sbjct: 61  KTSDISPAMGFPWRNLGCSPGLGSVTAKPRSGFSLSVPRLSISVRYNSTSGVYANVRKRF 120

Query: 121 TKERRNRGEIKGVSDNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMRGGKLFMRIFP 180
           +K+RR+RGE+KGVSDNVLSFGK+ALQALEPAWITS+QITAGQLAIKRNMRGGKLFMRIFP
Sbjct: 121 SKQRRSRGEMKGVSDNVLSFGKFALQALEPAWITSRQITAGQLAIKRNMRGGKLFMRIFP 180

Query: 181 HKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKFPLRTR 227
           HKPI+LRPAETRMGRGKGNI+ WVAGV+ GR+IYEINGVPESVARKAITVAASKFPLRT+
Sbjct: 181 HKPITLRPAETRMGRGKGNISHWVAGVRAGRIIYEINGVPESVARKAITVAASKFPLRTK 238

[Close]

BLAST of Spo11977.1 vs. NCBI nr
Match: gi|153012176|ref|YP_001381692.1| (ribosomal protein L16 [Medicago truncatula])

HSP 1 Score: 164.9 bits (416), Expect = 1.700e-37
Identity = 78/131 (59.54%), Postives = 104/131 (79.39%), Query Frame = 1

		  
Query: 96  YANVRKRFTKERRNRGEIKGVSDNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-G 155
           Y   R RF K+ R R + K    N +SFGKYALQALEPAWITS+QI AG+ A+ RN+R G
Sbjct: 6   YNPKRTRFRKQHRGRMKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRG 65

Query: 156 GKLFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVA 215
           GK+++RIFP KP+++RP ETRMG GKG+  +WVA VK G+++YE+ GVPE++ARKAI++A
Sbjct: 66  GKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIA 125

Query: 216 ASKFPLRTRFV 226
           ASK P+RT+F+
Sbjct: 126 ASKMPIRTQFI 136

[Close]

BLAST of Spo11977.1 vs. NCBI nr
Match: gi|827045307|ref|YP_009141646.1| (ribosomal protein L16 (chloroplast) [Medicago hybrida])

HSP 1 Score: 164.5 bits (415), Expect = 2.200e-37
Identity = 77/127 (60.63%), Postives = 103/127 (81.10%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVSDNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGKLF 159
           R RF K+ R R + K    N +SFGKYALQALEPAWITS+QI AG+ A+ RN+R GGK++
Sbjct: 6   RTRFRKQHRGRMKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIW 65

Query: 160 MRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKF 219
           +RIFP KP+++RP ETRMG GKG+  +WVA VK G+++YE+ GVPE++ARKAI++AASK 
Sbjct: 66  VRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKM 125

Query: 220 PLRTRFV 226
           P+RT+F+
Sbjct: 126 PIRTQFI 132

[Close]

BLAST of Spo11977.1 vs. NCBI nr
Match: gi|937634520|gb|ALI90840.1| (Rpl16, partial (chloroplast) [Desmostachys planchoniana])

HSP 1 Score: 163.3 bits (412), Expect = 4.900e-37
Identity = 78/128 (60.94%), Postives = 106/128 (82.81%), Query Frame = 1

		  
Query: 101 KRFTKERRNRGEIKGVS--DNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGKL 160
           KR    +++RG +KG+S   N + FGKYALQALEPAWITS+QI AG+ A+ RN R GGK+
Sbjct: 1   KRIRFRKQHRGRMKGISYRGNHICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKI 60

Query: 161 FMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASK 220
           ++RIFP KP+++RPAETRMG GKG+  +WVA VK GR++YE++GVPE++ARKAI++AASK
Sbjct: 61  WVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKAISIAASK 120

Query: 221 FPLRTRFV 226
            P+RT+F+
Sbjct: 121 MPIRTQFI 128

[Close]

BLAST of Spo11977.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXM5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_022900 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.100e-120
Identity = 226/227 (99.56%), Postives = 226/227 (99.56%), Query Frame = 1

		  
Query: 1   MATRVISQIRKLPLVNALRQASQPSATPGSYSSRWIMPSTSVGPTLKKTSGLTPAMGSLF 60
           MATRVISQIRKLPLVNALRQASQPSATPGSYSSRW MPSTSVGPTLKKTSGLTPAMGSLF
Sbjct: 1   MATRVISQIRKLPLVNALRQASQPSATPGSYSSRWTMPSTSVGPTLKKTSGLTPAMGSLF 60

Query: 61  RNSGLGSVTAHPRSGFSASIPSMSVSVRYNSTSGIYANVRKRFTKERRNRGEIKGVSDNV 120
           RNSGLGSVTAHPRSGFSASIPSMSVSVRYNSTSGIYANVRKRFTKERRNRGEIKGVSDNV
Sbjct: 61  RNSGLGSVTAHPRSGFSASIPSMSVSVRYNSTSGIYANVRKRFTKERRNRGEIKGVSDNV 120

Query: 121 LSFGKYALQALEPAWITSKQITAGQLAIKRNMRGGKLFMRIFPHKPISLRPAETRMGRGK 180
           LSFGKYALQALEPAWITSKQITAGQLAIKRNMRGGKLFMRIFPHKPISLRPAETRMGRGK
Sbjct: 121 LSFGKYALQALEPAWITSKQITAGQLAIKRNMRGGKLFMRIFPHKPISLRPAETRMGRGK 180

Query: 181 GNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKFPLRTRFVKC 228
           GNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKFPLRTRFVKC
Sbjct: 181 GNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKFPLRTRFVKC 227

[Close]

BLAST of Spo11977.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FFT9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g074590 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.100e-87
Identity = 176/243 (72.43%), Postives = 199/243 (81.89%), Query Frame = 1

		  
Query: 1   MATRVISQIRKLPLVNALRQASQPSATP-------------GSYSSRWIMPSTSVGPTLK 60
           MATRV+S IR   L+N LRQAS  S +              GSY S W M      P+L+
Sbjct: 1   MATRVLSHIRNSRLINTLRQASLSSCSSNPVKNAQLSPTSMGSYISGWTMT-----PSLR 60

Query: 61  KTSGLTPAMGSLFRN----SGLGSVTAHPRSGFSASIPSMSVSVRYNSTSGIYANVRKRF 120
           KTS ++PAMG  +RN     GLGSVTA PRSGFS S+P +S+SVRYNSTSG+YANVRKRF
Sbjct: 61  KTSDISPAMGFPWRNLGCSPGLGSVTAKPRSGFSLSVPRLSISVRYNSTSGVYANVRKRF 120

Query: 121 TKERRNRGEIKGVSDNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMRGGKLFMRIFP 180
           +K+RR+RGE+KGVSDNVLSFGK+ALQALEPAWITS+QITAGQLAIKRNMRGGKLFMRIFP
Sbjct: 121 SKQRRSRGEMKGVSDNVLSFGKFALQALEPAWITSRQITAGQLAIKRNMRGGKLFMRIFP 180

Query: 181 HKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKFPLRTR 227
           HKPI+LRPAETRMGRGKGNI+ WVAGV+ GR+IYEINGVPESVARKAITVAASKFPLRT+
Sbjct: 181 HKPITLRPAETRMGRGKGNISHWVAGVRAGRIIYEINGVPESVARKAITVAASKFPLRTK 238

[Close]

BLAST of Spo11977.1 vs. UniProtKB/TrEMBL
Match: A0A0F6NLP2_9FABA (50S ribosomal protein L16, chloroplastic OS=Medicago hybrida GN=rpl16 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.500e-37
Identity = 77/127 (60.63%), Postives = 103/127 (81.10%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVSDNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGKLF 159
           R RF K+ R R + K    N +SFGKYALQALEPAWITS+QI AG+ A+ RN+R GGK++
Sbjct: 6   RTRFRKQHRGRMKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIW 65

Query: 160 MRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKF 219
           +RIFP KP+++RP ETRMG GKG+  +WVA VK G+++YE+ GVPE++ARKAI++AASK 
Sbjct: 66  VRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKM 125

Query: 220 PLRTRFV 226
           P+RT+F+
Sbjct: 126 PIRTQFI 132

[Close]

BLAST of Spo11977.1 vs. UniProtKB/TrEMBL
Match: A0A0F6NLX6_9FABA (50S ribosomal protein L16, chloroplastic OS=Medicago papillosa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.500e-37
Identity = 77/127 (60.63%), Postives = 103/127 (81.10%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVSDNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGKLF 159
           R RF K+ R R + K    N +SFGKYALQALEPAWITS+QI AG+ A+ RN+R GGK++
Sbjct: 6   RTRFRKQHRGRMKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIW 65

Query: 160 MRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKF 219
           +RIFP KP+++RP ETRMG GKG+  +WVA VK G+++YE+ GVPE++ARKAI++AASK 
Sbjct: 66  VRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKM 125

Query: 220 PLRTRFV 226
           P+RT+F+
Sbjct: 126 PIRTQFI 132

[Close]

BLAST of Spo11977.1 vs. UniProtKB/TrEMBL
Match: S4SZ13_MEDTR (Ribosomal protein L16 OS=Medicago truncatula GN=rpl16 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.500e-37
Identity = 77/127 (60.63%), Postives = 103/127 (81.10%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVSDNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGKLF 159
           R RF K+ R R + K    N +SFGKYALQALEPAWITS+QI AG+ A+ RN+R GGK++
Sbjct: 6   RTRFRKQHRGRMKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIW 65

Query: 160 MRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAASKF 219
           +RIFP KP+++RP ETRMG GKG+  +WVA VK G+++YE+ GVPE++ARKAI++AASK 
Sbjct: 66  VRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKM 125

Query: 220 PLRTRFV 226
           P+RT+F+
Sbjct: 126 PIRTQFI 132

[Close]

BLAST of Spo11977.1 vs. ExPASy Swiss-Prot
Match: RK16_FAGEA (50S ribosomal protein L16, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.300e-39
Identity = 81/129 (62.79%), Postives = 106/129 (82.17%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVS--DNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGK 159
           R RF K+  +RG +KG+S   N + FG+YALQALEPAWITS+QI AG+ A+ RN R GGK
Sbjct: 6   RTRFRKQ--HRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGK 65

Query: 160 LFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAAS 219
           L++RIFP KP+++RPAETRMG GKG+  +WVA VK GR++YEI+GVPE +ARKAI++AAS
Sbjct: 66  LWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVPEKIARKAISIAAS 125

Query: 220 KFPLRTRFV 226
           K P+RT+F+
Sbjct: 126 KMPIRTQFL 132

[Close]

BLAST of Spo11977.1 vs. ExPASy Swiss-Prot
Match: RK16_POPTR (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 9.000e-39
Identity = 80/129 (62.02%), Postives = 106/129 (82.17%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVSD--NVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGK 159
           R RF K+  +RG +KG+S   N + FG+YALQALEPAWITS+QI AG+ A+ RN+R GGK
Sbjct: 6   RTRFRKQ--HRGRMKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 65

Query: 160 LFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAAS 219
           +++RIFP KP++LRP+ETRMG GKG+  +WVA VK GRMIYE+ GV E++ARKAI++AAS
Sbjct: 66  IWVRIFPDKPVTLRPSETRMGSGKGSPEYWVAVVKPGRMIYEMGGVAENIARKAISIAAS 125

Query: 220 KFPLRTRFV 226
           K P+RT+F+
Sbjct: 126 KMPIRTQFI 132

[Close]

BLAST of Spo11977.1 vs. ExPASy Swiss-Prot
Match: RK16_SOLBU (50S ribosomal protein L16, chloroplastic OS=Solanum bulbocastanum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.500e-38
Identity = 80/129 (62.02%), Postives = 106/129 (82.17%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVSD--NVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGK 159
           R RF K+  +RG +KG+S   N +SFGKYALQALEPAWITS+QI AG+ A+ RN R GGK
Sbjct: 6   RTRFRKQ--HRGRMKGISSRGNRISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 65

Query: 160 LFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAAS 219
           +++RIFP KP++LRPAETRMG GKG+  +WVA VK GR++YE+ GV E++AR+AI++AAS
Sbjct: 66  IWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAAS 125

Query: 220 KFPLRTRFV 226
           K P+RT+F+
Sbjct: 126 KMPIRTQFI 132

[Close]

BLAST of Spo11977.1 vs. ExPASy Swiss-Prot
Match: RK16_SOLLC (50S ribosomal protein L16, chloroplastic OS=Solanum lycopersicum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.000e-38
Identity = 80/129 (62.02%), Postives = 106/129 (82.17%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVS--DNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGK 159
           R RF K+  +RG +KG+S   N +SFGKYALQALEPAWITS+QI AG+ A+ RN R GGK
Sbjct: 6   RTRFRKQ--HRGRMKGISYRGNRISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 65

Query: 160 LFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAAS 219
           +++RIFP KP++LRPAETRMG GKG+  +WVA VK GR++YE+ GV E++AR+AI++AAS
Sbjct: 66  IWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAAS 125

Query: 220 KFPLRTRFV 226
           K P+RT+F+
Sbjct: 126 KMPIRTQFI 132

[Close]

BLAST of Spo11977.1 vs. ExPASy Swiss-Prot
Match: RK16_ATRBE (50S ribosomal protein L16, chloroplastic OS=Atropa belladonna GN=rpl16 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.000e-38
Identity = 80/129 (62.02%), Postives = 106/129 (82.17%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVS--DNVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGK 159
           R RF K+  +RG +KG+S   N +SFGKYALQALEPAWITS+QI AG+ A+ RN R GGK
Sbjct: 6   RTRFRKQ--HRGRMKGISYRGNHISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 65

Query: 160 LFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAAS 219
           +++RIFP KP++LRPAETRMG GKG+  +WVA VK GR++YE+ GV E++AR+AI++AAS
Sbjct: 66  IWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAAS 125

Query: 220 KFPLRTRFV 226
           K P+RT+F+
Sbjct: 126 KMPIRTQFI 132

[Close]

BLAST of Spo11977.1 vs. TAIR (Arabidopsis)
Match: ATCG00790.1 (ribosomal protein L16)

HSP 1 Score: 159.1 bits (401), Expect = 3.300e-39
Identity = 76/129 (58.91%), Postives = 106/129 (82.17%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVSD--NVLSFGKYALQALEPAWITSKQITAGQLAIKRNMR-GGK 159
           R RF K+  +RG +KG+S   N + FG+YALQ LEPAWITS+QI AG+ A+ RN+R GGK
Sbjct: 6   RTRFRKQ--HRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 65

Query: 160 LFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVAAS 219
           +++RIFP KP+++RPAETRMG GKG+  +WVA VK G+++YE+ GVPE++ARKAI++AAS
Sbjct: 66  IWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAAS 125

Query: 220 KFPLRTRFV 226
           K P++T+F+
Sbjct: 126 KMPIKTQFI 132

[Close]

BLAST of Spo11977.1 vs. TAIR (Arabidopsis)
Match: AT2G28830.1 (PLANT U-BOX 12)

HSP 1 Score: 135.6 bits (340), Expect = 3.900e-32
Identity = 70/131 (53.44%), Postives = 96/131 (73.28%), Query Frame = 1

		  
Query: 97  ANVRKRFTKERRNRGEI-KGVSDNVLSFGKYALQALEPAWITSKQITAGQLAIKRNM-RG 156
           +++ +R   ++ +RG I KGVS       +YALQ LEPAWITS+QI AG+ A+ RN+ RG
Sbjct: 829 SDIPRRTKFQKHHRGRINKGVSSQGYICSRYALQTLEPAWITSRQIEAGRRAMTRNIGRG 888

Query: 157 GKLFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARKAITVA 216
             + + IF  KP+++RP ETRMGRGKG  AFWVA VK G++IYE+ GV E VAR+AI++A
Sbjct: 889 LTVRVHIFADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIA 948

Query: 217 ASKFPLRTRFV 226
           ASK P +T+F+
Sbjct: 949 ASKLPAKTKFI 959

[Close]

BLAST of Spo11977.1 vs. TAIR (Arabidopsis)
Match: ATMG00080.1 (ribosomal protein L16)

HSP 1 Score: 79.7 bits (195), Expect = 2.500e-15
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 1

		  
Query: 100 RKRFTKERRNRGEIKGVSDNV-LSFGKYALQALEPAWITSKQITAGQLAIKRNM------ 159
           R +++K R+ R       D   L FG+Y  ++ +   ++ + I A + AI  +       
Sbjct: 41  RTKYSKYRKGRCSRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMSG 100

Query: 160 ---RGGKLFMRIFPHKPISLRPAETRMGRGKGNIAFWVAGVKTGRMIYEINGVPESVARK 219
              R GK+++R+F   PI+ +P E RMGRGKGN   W+A V TG++ +E++GV  + AR+
Sbjct: 101 QFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANARQ 160

Query: 220 AITVAASKFPLRTRFVK 227
           A T+AA K    T+FV+
Sbjct: 161 AATLAAHKPCSSTKFVQ 177

The following BLAST results are available for this feature:

BLAST of Spo11977.1 vs. NCBI nr
BLAST of Spo11977.1 vs. UniProtKB/TrEMBL
BLAST of Spo11977.1 vs. ExPASy Swiss-Prot
BLAST of Spo11977.1 vs. TAIR (Arabidopsis)

BLAST of Spo11977.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902234962\|gb\|KNA23664.1\|	1.6e-120	99.5	hypothetical protein SOVF_0229...	[more]
gi\|870863527\|gb\|KMT14691.1\|	3.0e-87	72.4	hypothetical protein BVRB_4g07...	[more]
gi\|153012176\|ref\|YP_001381692.1\|	1.7e-37	59.5	ribosomal protein L16 [Medicag...	[more]
gi\|827045307\|ref\|YP_009141646.1\|	2.2e-37	60.6	ribosomal protein L16 (chlorop...	[more]
gi\|937634520\|gb\|ALI90840.1\|	4.9e-37	60.9	Rpl16, partial (chloroplast) [...	[more]

BLAST of Spo11977.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RXM5_SPIOL	1.1e-120	99.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8FFT9_BETVU	2.1e-87	72.4	Uncharacterized protein OS=Bet...	[more]
A0A0F6NLP2_9FABA	1.5e-37	60.6	50S ribosomal protein L16, chl...	[more]
A0A0F6NLX6_9FABA	1.5e-37	60.6	50S ribosomal protein L16, chl...	[more]
S4SZ13_MEDTR	1.5e-37	60.6	Ribosomal protein L16 OS=Medic...	[more]

BLAST of Spo11977.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RK16_FAGEA	5.3e-39	62.7	50S ribosomal protein L16, chl...	[more]
RK16_POPTR	9.0e-39	62.0	50S ribosomal protein L16, chl...	[more]
RK16_SOLBU	1.5e-38	62.0	50S ribosomal protein L16, chl...	[more]
RK16_SOLLC	2.0e-38	62.0	50S ribosomal protein L16, chl...	[more]
RK16_ATRBE	2.0e-38	62.0	50S ribosomal protein L16, chl...	[more]

BLAST of Spo11977.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
ATCG00790.1	3.3e-39	58.9	ribosomal protein L16	[more]
AT2G28830.1	3.9e-32	53.4	PLANT U-BOX 12	[more]
ATMG00080.1	2.5e-15	35.0	ribosomal protein L16	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 118..130 score: 5.3E-26coord: 151..180 score: 5.3E-26coord: 181..210 score: 5.3
IPR000114	Ribosomal protein L16	PANTHER	PTHR12220	50S/60S RIBOSOMAL PROTEIN L16	coord: 100..226 score: 2.5
IPR000114	Ribosomal protein L16	TIGRFAMs	TIGR01164	TIGR01164	coord: 100..219 score: 2.1
IPR016180	Ribosomal protein L10e/L16	GENE3D	3.90.1170.10		coord: 119..226 score: 1.6
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 100..225 score: 1.4
IPR016180	Ribosomal protein L10e/L16	unknown	SSF54686	Ribosomal protein L16p/L10e	coord: 101..225 score: 4.97
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 175..186 scor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0009637	response to blue light
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0051258	protein polymerization
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0051301	cell division
biological_process	GO:0006412	translation
biological_process	GO:0007049	cell cycle
biological_process	GO:0006364	rRNA processing
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009658	chloroplast organization
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005874	microtubule
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005515	protein binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0043621	protein self-association

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08998	0.66	Barchart \| Table
Spo02001	0.65	Barchart \| Table