Spo06453 (gene) | SpinachBase

Overview


Name	Spo06453
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 18329624 .. 18334203 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCATACTTTCTTGCCATATTTGAGAAGCCGTACGTAATCCACCCTGAAAATATTATAAATGAGAATGGTGTTGCTTCCTTGACAAGAATATGCGTAAGCAAAACCATAAAACGTTAAGAAAAAAAAAAAAAAAAAAGTAATGGAAGTTTGGGTATTGTGACTGAGAGAAAAATGCCAAAGATGGAAGGGAAATTGGTACTCTAAATTTGTCCTTTTTAGATGAAATAAACACAACAATCCACCAAATATATGGGAGGCTTTCTTTGGTGGAACTTGCTTCAAATTTTGGAAACATACTTCTATTTGACCATCTTCCTTTGACTTGGAGGTTTATAAGTTTATACTATTAATCTAGTGCGTAGTATATTATTAGTTTATTACTCTGTATCGTTAATAATGTTATACATAAATATTAAGGGTATAATTCGCATGTGAGTGTTAAAATCAGTCATCTCATGTTAGACGAATAAAGTGAGATTGATTAACATACAAGATTGGTGAGTTATTTCAAATTCTTCTTCAGCTTAGGGCTCGATTTGACCCAATAAAATTTATGGATACATGCCGATCGCAGACAAAATAATTGAGGGAGAAATTAATAATAGTGATTTTTTTGGATCCCCTTACCAGCTACACCATTTATTACCGTTACAGCCGGAGAAGGAGCATTAAGTACCATAATTATAGAAATATAACTCAAATATGGGCACATGAATAATAACGCTGACATGGTGTGGTTGTAATCTAATCCTATTTCTTATTAGTAATAACTAGCTTTTGAGCCCGTTCTTTATGGTTATTTAATCACCTTTTTAAGTTTTAATTTTATTGAGCTTGTGATTTTAGTGAAAATATATGATTTAAATAGAGGTAGAATTTAAAGGTTGAAATAGTAAATAAATTAAATAGTAAATTAATATTGAGTGTTAAAGGGGGAGATGTAGTGGAAGATGTTAAATGAGTAAATTGGTGAATTGATGTTGTACGTGGAAAATGAAGTAGAAGAGGCGATTAGAATTATAAAATAAAGAAAACAACAAAAAAAAGTTGAAGAAAATTACCAAATGAGATGGAGGAAAGAAGAAATGACACGTATCTGATCAAATATATGGTTTTACTTTTTAAATACTAGGTATAGATGTGGGGGAAAAAAATGATTAAATGATCACCTATAATATATGTGCGCACTTATATTTATAAAACTTCAAAAACTAGATATTTGAATGCTATAGGTTGATAATAAGTAATTGTATAATCAAGTTGCCTTTTTTTTATCTTTTTTTTTTTAATATGTAGTAGTAATTGTTACGAAATAAAGCAATTAGAACAACTTATCTTGATAAAATTAGAAAGTACCCGATCGCTTGCGGTTGTCGTGAAGCCCAAGCTCGACCCAGCTAGCGCGCATGTATATACGGAGTATAAATAAAGGAAGAACTTGATATTCTACCACATCCCATTTTCTTAAACACTCAACTCATGGGAGAAAAGTAGCACTCAACTCAAACGAATTTTTGTGTTTTCTGCCCTTTTGTTTTTGGAAATAGTAAAATACTAGATTAGATCCCGTGCACGCACGGATATATAAAATTATTATTTGATCATTTTTTGTATAAAAATGTTTAACTGTCTATTTCTCGTTATAAAGAAAATGCATAATAAATATGTCAGTTGCATACTCATTTAATCAATTAATATGCAATTTTCGTCCTACTACGTATTACATATTTTATATGCTTAATATGCTAATTTGATCAAAATATTAAATAAAAAATACTTTTTCCATTTGATATATACCTATTTGACTAAAATATTACCAAAATCATTTTAAGCAAATTATTATTATGTGGTATCTATTAGTTGCCCTATTCTATATTCCAATATATTTTTTCCATATGTAAACAGTTTATAAAAAAAAGGGAGAAAATAAAAATGAAATAAAGTAGATATATTTTTAGGAAAAAGAAATTGGAGAAATTTTTTTGCGTCAGGAAGTGACACATCCCGTGGGCTCGACCCGAAGCCCGACCGACCCGGCCCACGGCCATCTTTAGAATTACGTAGTTGATAGATTAGATTACGCAATTTTTGCTCATGTTTAAGGAAGTTACATACTTTTTTTAAAGTAGTAAAATATTACTATCATATCAATGGCGGTGGTAATTATCGAACTTAGTTGCTAAATATAATATGTCTAAAATATAAAATAGTACAATCATTGGAGGCTATAAATATCGAATTTAGTTGTTAAAATTTTATAGAGTACTAGTAACTTTTTGTATACACTCTATACATATTGTATTGGTTTTTTAATTTGTTTGTATTCTAATATATTATGTAATCGGTAGATTACTGTCAGCTTTTTTTTTTAATAAATATCCTACTACGTACTCCATATAATGGACTAATTTTTTATAAAAAGATAAGCACATTGGTTATATTTGTTAACAAAATATAGAAAAGATTTTACAAAATATTCCCCAGGTATAGAATAATATCTTTTTTTAGGAAAATAGAATCAAAACTTTATAAAGTGAAAGTTAACAAAATAAACTTTTTGTATAATTTTTTTATATCTATAAGAGAGGCCAATCAATGAGTGACATTTGTCATCACCACATTGATTTCCTCTCTTTTAGTATAATATATAGATAGATAGATACGAGTAGATTTTAAGCAAATTATTATTATGCGGTATCTATTAGTTGCCATATTCTATATTCCAACATATTTTTTCCATATGTAAACTGTTTATAGAAAAAGGGAGGAAAAAAAGCAATAAGTAGATATATTTTTAGAAAAAAAAAATGGCGGGAAAATTTTGCACCAGGAAATGATACGTGTCACTTCCGATGTCTGATTTAGTATAATGTAATTGATTACTCCGTAGTAGGAAAATAGATAGCGATTAGCCAATGAATTCAACATAATTTTTGCTAATTCCTTAACTATGTTAACGGGAAAATGGTTTTTACATCCTGTACAATACACATTGTAGATAGACGAAGTATTGTGTACGTTAACATACTTAATTAAGCCATCAATAATCTCATTACCTGTTTTCTACTTAGATTAAGGAGCATAACTTCTTTTTCTAATTCCACGTGGCACTAAGTTAGTTAGGGAGCACACTCATTGCTTTCTGGTTTCTACTATGTCCTATAGTTGTAGAAGAAAAACAGTTAAATACTTGTATATACTTAGGGATGGAAATCTGTAAAGCAAAGAAAGAACTATCTAAAAAAGCCTTGCATAATGTTCATGTACTCTGGCTATTTTATTAGAGTAATCTTTATTTTCTTAAATTTGTAAATGTAAAATAAGTTTTAATGATTCGTCGAATTGTATTGTTGTATTTACTTCTTATTAAGTGATAAACAATATGAGTGGATTGTACATGCAATCATATACAAAATATTCATTTTTTTTAAAATTAGGTAAGAATAATTGCCTTACTCGAACAGCTATCTTGGATTAATCAGCTTAGTTACACATATCTACACTTGAACCACTCCCAAACATTTCGTAGCTGGCGATCTCGACTCTGTAACCTACGAAGTCAAAAGGTGAATTTCCCACTAATTCCACCAACTTATATTGGTTACGAAATATTCATATTACAGGACAATTAATGGACAAATTTGGTTTTAGCAATACTAAAGTCAATTGTTACTTTGTACTAGACCATTATATAAAGTACTCATTCGTTTCCCTATTAAGTAGTTCAGTTGATAAGTAAGGGGTCAAGTTTAGAAATGTACGGCGTATCAAAGGTTCAAACCTTGTAAACACAACCCCTTATAAACTGATCAATTGAAACACATGTTGCGACTTATCTCCTCCATGATGGTCGAGTGGCCGGACAACGAGGCTTAAGGGCCAGGGTTTCAGCTATTTGGGATTACTTGAAATCCATATTCCAAAATTAAACAACAGATATAAAACTAAAAAGAAAAGACAGCATTAAAATAAAGCAAAGTAGTACTTGATGATGGTGGTGCTTCAAGAAAAAAATTAATGCTCCTTTTTGTTAACTCAATGGTGGTGGCAGATGAAATGCATAAATAAAATCATTAAAAGTGGAGGATTCAAGTTGGGGAGAAGAGGTAATTTAATTAGGTTGGTGTGCTCTCATTAATTTAGGTCTACCCTACTCCTATTAGACTATTTCCCTTTAAATATATTGCCTTTCTTTCAATTCACATTTCCCTCCTTTTTTTCTCTTTTCTTTTTTCTTGGTACAAATTTATTAAAACCACACTCAAAAAAACAAGAAAGAAATCAAAACTCCAAAAAAAAAAAAAAAANAAATTTATTAAAACCACACTCAAAAAAACAAGAAAGAAATCAAAACTCCAAAAAAAAAAAAAAAAAAAACCCAAATATTAATTGGAAAAACAGAGAGGTTTAAATATTTGGATGATATATATGACTCCAATGCAAGCAATATCAGTAATCATGATCTATCTGTCCTTGTTCAAACCATAGAAGTTTCTTCCAAATTTATTTCATTTTCCAGTTTTTGCACCCACCCTTCTTCATTTCTCCCCTACATTACTATTCTAGAGAGATAA

mRNA sequence

ATGTCTCCATACTTTCTTGCCATATTTGAGAAGCCGTACGTAATCCACCCTGAAAATATTATAAATGAGAATGGTGTTGCTTCCTTGACAAGAATATGCATGAAATGCATAAATAAAATCATTAAAAGTGGAGGATTCAAGTTGGGGAGAAGAGAGAGGTTTAAATATTTGGATGATATATATGACTCCAATGCAAGCAATATCAGTAATCATGATCTATCTGTCCTTGTTCAAACCATAGAAGTTTCTTCCAAATTTATTTCATTTTCCAGTTTTTGCACCCACCCTTCTTCATTTCTCCCCTACATTACTATTCTAGAGAGATAA

Coding sequence (CDS)

ATGTCTCCATACTTTCTTGCCATATTTGAGAAGCCGTACGTAATCCACCCTGAAAATATTATAAATGAGAATGGTGTTGCTTCCTTGACAAGAATATGCATGAAATGCATAAATAAAATCATTAAAAGTGGAGGATTCAAGTTGGGGAGAAGAGAGAGGTTTAAATATTTGGATGATATATATGACTCCAATGCAAGCAATATCAGTAATCATGATCTATCTGTCCTTGTTCAAACCATAGAAGTTTCTTCCAAATTTATTTCATTTTCCAGTTTTTGCACCCACCCTTCTTCATTTCTCCCCTACATTACTATTCTAGAGAGATAA

Protein sequence

MSPYFLAIFEKPYVIHPENIINENGVASLTRICMKCINKIIKSGGFKLGRRERFKYLDDIYDSNASNISNHDLSVLVQTIEVSSKFISFSSFCTHPSSFLPYITILER

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06453.1	Spo06453.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo06453.1 vs. NCBI nr
BLAST of Spo06453.1 vs. UniProtKB/TrEMBL
BLAST of Spo06453.1 vs. ExPASy Swiss-Prot
BLAST of Spo06453.1 vs. TAIR (Arabidopsis)

BLAST of Spo06453.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo06453.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo06453.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo06453.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016556	mRNA modification
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006457	protein folding
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0048868	pollen tube development
biological_process	GO:0019760	glucosinolate metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0003756	protein disulfide isomerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0004746	riboflavin synthase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0043621	protein self-association

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo00214	0.75	Barchart \| Table
Spo14914	0.74	Barchart \| Table
Spo08478	0.74	Barchart \| Table
Spo06953	0.73	Barchart \| Table
Spo04200	0.72	Barchart \| Table
Spo05307	0.72	Barchart \| Table
Spo02918	0.72	Barchart \| Table
Spo11688	0.72	Barchart \| Table
Spo02696	0.71	Barchart \| Table
Spo16643	0.71	Barchart \| Table
Spo09387	0.71	Barchart \| Table
Spo24214	0.70	Barchart \| Table
Spo01983	0.70	Barchart \| Table
Spo15266	0.70	Barchart \| Table
Spo15390	0.69	Barchart \| Table
Spo01252	0.69	Barchart \| Table
Spo06170	0.69	Barchart \| Table
Spo19018	0.69	Barchart \| Table
Spo24913	0.69	Barchart \| Table
Spo25008	0.69	Barchart \| Table
Spo25985	0.69	Barchart \| Table
Spo13981	0.68	Barchart \| Table
Spo14256	0.68	Barchart \| Table
Spo00943	0.68	Barchart \| Table
Spo25804	0.68	Barchart \| Table
Spo23154	0.68	Barchart \| Table
Spo25196	0.68	Barchart \| Table
Spo07548	0.67	Barchart \| Table
Spo20106	0.67	Barchart \| Table
Spo06637	0.67	Barchart \| Table
Spo26697	0.67	Barchart \| Table
Spo26975	0.67	Barchart \| Table
Spo15130	0.67	Barchart \| Table
Spo05032	0.67	Barchart \| Table
Spo11417	0.67	Barchart \| Table
Spo10835	0.66	Barchart \| Table
Spo03523	0.66	Barchart \| Table
Spo03362	0.66	Barchart \| Table
Spo17729	0.66	Barchart \| Table
Spo22004	0.66	Barchart \| Table
Spo10491	0.66	Barchart \| Table
Spo23332	0.65	Barchart \| Table
Spo22999	0.65	Barchart \| Table
Spo08407	0.65	Barchart \| Table
Spo18605	0.65	Barchart \| Table
Spo06775	0.65	Barchart \| Table
Spo23558	0.65	Barchart \| Table