Spo04659 (gene) | SpinachBase

Overview


Name	Spo04659
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 24964430 .. 24968786 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAGAACTTTTAGGAAATGAAATATAGGTACGATGTACATAAACGAAAAAATCCTAGCCCCAATTCTAACGCAATCACACATTCACATTTCACACCAATATCCTCCCCCAAAACCTCTGGTAGTCCCGTGGTTCTCACAAGATCAATTCTCAAGATCAGTCATCCTCTCTAAAGATCATCTCGAACAAGGGATACTCTCGAGCAATTCATCATCGCGTGTCTACTGCTGGTTTTCCAATCTTTCCAACACAGCAAAAAAAAGGTAAGGGGTTTATTTGATTCGCAACTTCTGCATAATTGAAGTATTAATCTTAGCAATCTTAATTTTTTGTGTTGATGTTATTATTTTTGGTTTCTCATCAGATTAGGCGTTTTTTTATCTAAAAATTATTGAATTGATATGATTAAATTGGGTGTTTTCCATCAAAAAGTTATTCAATTGATATGATTAAATTGATATGTGATGGTTTCTTCCCTTGGTTTCTACTTGATTATGCAATCTGATTTCAATTCATCTCGTTCTACATTTCTGGAAGATTTCAAGCCGTCTTTGTAGCGTTTCAGTTTCTTACACTGTTGGGTTCTTTGGTTCATGGTATGTTGTTTTTGGGTGGTTTCTGGTTGTGGCTGTTTATGATCTGAAATTGTACTTTTTTTTCCTGATTTCCTTTGTTTATTGAACATGATTTACGGTTTCTTCGTATTTATGGGTTAGCTTCTTTGATTTCTTTTCCTTTTTTCTTTTTATGGGTTAGTTAGTGTTTGCATTTGAACTGGGTTCGTGATTGGTGAATGGTGATCATCGGACCTGTTTATTTGTCTTTTCGGATCATCTCTGTCTTGCATGGGTTCTACTATATTGTTTAATTTGTCTCTTCCTTTATCTTCTCTCAATTCTAGTACAATGTTTTTTGGAGTTTTTTTTGGTGTTTCATAGACTCATGTTCTATCAATTTCTGATTTTCCGTAAAGTCTTGGTATTAAAATTTCGATTTTTAGGGGTTTTTGGTGTTTTAAATTCCATCTTCTCCCAGTTTCTGATTTTCTAAGTGAAGGTATATATTTGAATTTCGATTTTTTTGGGGTTTTCGGTGTTTAGATCCGTATCTTCCCTGAATATATTTCTGAATTTCTAGGTGTAGGCGTTTAAATTTTGGTAACAACCTGCAAAATCGCTACCTTAGAACCTGAACCACCAAAAACTAGTAAAAATTCAAAATTGAAATACATGGACCTAGAAAATTCAGAGATTGAGAACATAAGAATCTGAAAAGATAAGAATCCCCCATGAAAAATCGAAATTGTAATGCCCTTTTAAAAAGCACAGTAACTGAAATTGCAAGTTTTTGCTGGAACTCTCAAAGGTACTCCCTCTTCTTTCTTCTCTCTCACTCTTTTAATAGGTTACAAATTCATCGTGTTTGATTTCTTTTGTTTGCCATTTGATCTGGATAATCAAGCTCTTGTAAGCAATTTTGTTGCATCGTTTTGTCAGTTTATTACATTAGAAATAGTTTGATCCCTGTGAAAATTCTATTTAGATTTTCCTGGTAGTTGTGTTTTATCAGCAACTTTTGATGATATGATCTTGGTTTAATTAATTTGACATCGTGTTTGCTGAAAGACCAAAGTTTACTTTACAGTGGGTCAACTGAAGAAGCAATTATGGTTTTTTTATTGTAAGTTTAGAATGTGACTATTGTAATAGTTGGTGGATTAAGAATAATGTGCATTGTGTTTTTATGATGTTGGGATTATAACCTTAACCTCATGGGAAATTACCCTTTGCTGATATGATGAGGTTATACATGGTCCTAAAACAATATCCCATTCTTCAACTTTATCAGCTGTTGATCTCGTGGTTGATTTTCAAGGGTGTTTTTGTAGTAGTGATTGTTGATGGCTGTCACTAATTTACTGCAGTCAGTCTTGAGGATAACGTCAGATAGGCCTCTATTCTTCGCCTCCTTTAATCCTGTCAAAAGAGCCATAGCTTCAGTCTGCTGCGCATTTTGAGCCAGTACCCTGCAACCTCCTTCACTCAAAGGACCTCACAAAATCATTATCCTAACCTCCTTACTCTTTACCAACTGATTGAGTTTTGCGTTTGAATAACAAAGACTCTAATTCAGTTCCTTACTACCTTCATCATGAAATATATGCTTTCTTAGGTAGTGCTCTAAATCTCTAATAGTCCAATACTCATTCAATTCCTAAGACTTGTAAAAATTGACTAAGACACTTCCCACATTCCCACTCCATGAATGATACCCACCAACTACCAAAAGTTTGACCTCTTTTTTAGTTTTTTTCCACTCACCTTATGGTAACATTGTAAAACAACTTAAGTGAAGTAGTTTAGTTACATGAAGCAACTCGTTCATGCCATTACAGGGAATCCAGCACAACCTCTTAACTGCATACCATCCACAAATTGACCATCATTATCCTATTTGTTTCGAAATGATTAGACCAAACCCGATCACAATGGTCCATAGACCCAGTTTCAACAGGTCCCTGGTTGATTTTAGTGATCTGCTTTGAGATGAAGGTTAAACTGTAAGATGTCTGATTGCAATGTTTTTTGCTTTTCACATAATCATATTAGTTGGTGGAAAGTAGGTGGTATAATCCCTTAACAAACATGGAAATTTTTCACATTTGCGTATGTAGCTTTCTGGCTGTCTTTTAACAGTTTCTAATCATTTTCGCAAACGAGTGAAAAATACATCAGGATCAACTAGCTGAACTGTCACCAGTTTTTAGATGTCTGATGGTGTACAAGAACTTGGATTAATTAAGGTAAGAAACTATAAATAAAGAATGTAAATATGCAAAATTGATCAATTAGATGATAATAATAACTGATGTATTTCATTAATCATCATCAAAGTACAAGCTAATGTTTAAGAATGTCAAACCTATGACATTGTGTTATACATGACCTTCACAATGTCACCTAAACTTTGAAATCCAAAACCCATTGAACATAATTGTCAAGGCTATTGCTACAACTACAAGCCTACAGGCTTCTGCTACATCTAACTACATAGGGTTGCTGCCTAAACAATTCCTCAAGTCATGGGACAAATGCTGGATAGAATATGAAGGTGTCTGAGTCGTATTTCCTTTAACACGGGAAACCAAATCTCCTCATACGACTGTGTTGGGTGGGCTTTAAAAGCCCGATGATTATATTCTTCACTAATGTCTCCTGAAGGTCGGTTGATTTTCCAGAAAAATTACCTTAACCTTCATCTCACAGTTTCAACTAACAGGTCCCTGGTTGATTTTAGTGATCTGGTGTATCTGTTCAGTTTCATGCCAGGTCCCTGGTTCAGTTTCTGAAAATGTTTACTGTGAATTGTTGCAAAAACTTGGGGGATAATAGCAAGCCTACAGAGTCCAATTCGCCTCCAGAGTTTATATGAATATCATAGATTTATTTGATATGGGTAGATAAGTGGTGATAATTTTCCTTTACACTCCATGCATGTTGATTTTAGTGATCTACTGTATCTGTTCAGTTTCAAGAGTCTTCAAGTGACTGATATATGCCACGCAAGTGATTTACCGTGTTTCAAGAGTCTACACCTAATAATACTTGGAACAATTTTTCTCATGTTTATGAGTTATCGGACTTGGCAAGCCAACAACAAAGGATCTCGAAAGTCTCTAAGATGGAAAGAAATTATAGTAAAATTTAATTAGTTTGCTTATTATTTTTATCGTAATTTATTCATATATATGTTATTCTTTAATTTAATGTGTATTATATTTGTATCTTAATTAGTGTTCTTCGAACCGGAAATGCTTGAATGTGGCTATTACGTCATGAAGTACATGTATCAAATAGTTTTACTTAGATTACAAAGTATTAGTAATGTGGAAGAGGTACGTGTACATGTATTTTTGTTATTATTTTATCTCAGTTGTTACTATATATGCGCTAGTTTTTATTTAAACTTTACTAATATAATACATTATTTTGTTGAAGGGCAGATATTTTCTCCAAACCCGTACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGAGTAGATATTTTATTAATAGTTGTTTGTAGTCATTTTCTAGTTTTCGGAGATAGAAATTAAACTATAACAAATTGTAGGGTATTTTTTGGAATACAATTATTTACAATTGTTGAACCAACTTTCTTGTTTGAATTAATACAAAAACATTTTCGCAATTATACAATTCTCAGCTCTATTTATTATTGTTGTGAATTTATTACGTACGTAGAAATAATTTAATTTAGCGATAACAAAATAAAAAAAAAAACAAAAAACATAATACACACTTTAGGTGTCACCTCCTATAATTACATGC

mRNA sequence

GTAAAGAACTTTTAGGAAATGAAATATAGGTACGATGTACATAAACGAAAAAATCCTAGCCCCAATTCTAACGCAATCACACATTCACATTTCACACCAATATCCTCCCCCAAAACCTCTGGTAGTCCCGTGGTTCTCACAAGATCAATTCTCAAGATCAGTCATCCTCTCTAAAGATCATCTCGAACAAGGGATACTCTCGAGCAATTCATCATCGCGTGTCTACTGCTGGTTTTCCAATCTTTCCAACACAGCAAAAAAAAGGGCAGATATTTTCTCCAAACCCGTACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGAGTAGATATTTTATTAATAGTTGTTTGTAGTCATTTTCTAGTTTTCGGAGATAGAAATTAAACTATAACAAATTGTAGGGTATTTTTTGGAATACAATTATTTACAATTGTTGAACCAACTTTCTTGTTTGAATTAATACAAAAACATTTTCGCAATTATACAATTCTCAGCTCTATTTATTATTGTTGTGAATTTATTACGTACGTAGAAATAATTTAATTTAGCGATAACAAAATAAAAAAAAAAACAAAAAACATAATACACACTTTAGGTGTCACCTCCTATAATTACATGC

Coding sequence (CDS)

ATGTACATAAACGAAAAAATCCTAGCCCCAATTCTAACGCAATCACACATTCACATTTCACACCAATATCCTCCCCCAAAACCTCTGGTAGTCCCGTGGTTCTCACAAGATCAATTCTCAAGATCAGTCATCCTCTCTAAAGATCATCTCGAACAAGGGATACTCTCGAGCAATTCATCATCGCGTGTCTACTGCTGGTTTTCCAATCTTTCCAACACAGCAAAAAAAAGGGCAGATATTTTCTCCAAACCCGTACACTCAAGAGGAGATCGATGA

Protein sequence

MYINEKILAPILTQSHIHISHQYPPPKPLVVPWFSQDQFSRSVILSKDHLEQGILSSNSSSRVYCWFSNLSNTAKKRADIFSKPVHSRGDR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04659.1	Spo04659.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo04659.1 vs. NCBI nr
BLAST of Spo04659.1 vs. UniProtKB/TrEMBL
BLAST of Spo04659.1 vs. ExPASy Swiss-Prot
BLAST of Spo04659.1 vs. TAIR (Arabidopsis)

BLAST of Spo04659.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04659.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04659.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04659.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016209	antioxidant activity
molecular_function	GO:0016491	oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14264	0.76	Barchart \| Table
Spo03665	0.72	Barchart \| Table
Spo00329	0.70	Barchart \| Table
Spo01809	0.70	Barchart \| Table
Spo04778	0.70	Barchart \| Table
Spo11276	0.70	Barchart \| Table
Spo01155	0.69	Barchart \| Table
Spo10965	0.68	Barchart \| Table
Spo26352	0.68	Barchart \| Table
Spo06574	0.68	Barchart \| Table
Spo17186	0.68	Barchart \| Table
Spo01887	0.67	Barchart \| Table
Spo09638	0.67	Barchart \| Table
Spo11630	0.67	Barchart \| Table
Spo12090	0.67	Barchart \| Table
Spo15995	0.67	Barchart \| Table
Spo03110	0.67	Barchart \| Table
Spo11285	0.66	Barchart \| Table
Spo04486	0.66	Barchart \| Table
Spo04719	0.66	Barchart \| Table
Spo23125	0.66	Barchart \| Table
Spo22694	0.65	Barchart \| Table
Spo14240	0.65	Barchart \| Table
Spo27009	0.65	Barchart \| Table