Spo06447 (gene)

Overview
NameSpo06447
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionProtein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 (Protein ORGAN BOUNDARY 4)
Locationchr4 : 36335529 .. 36336221 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTATGATGAATAGTAATAATCCTATCTACAGCTATAGTGGAGATGGAGATGGAGGTGTAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAAGTGGGAGTTCTTTTACTCTAACTACTGGTGGTGGTAATGGTGGTGGTGGTGGTGGTGGTAGTGGTAGTGGTAGCGTTGGTTCTGTTGTGGGTTCAGAGTCAGGTGGGAGTAGCAACGAGCCGTCCCCACAACGGTCGGTCCAGTCCCTTCCTAGCAGGTACGAGAACCAGAAACGGAGGGACTGGAACACGTTTAGCCAGTACCTGAGAAGCCACCGGCCTCCTCTGCCGTTGTCACTGTGCAGCGGGACTCAAGTGTTAGAGTTCCTGAGGTACTTGGATCAGTTTGGAAAGACAAAAGTTCACAACCATGCTTGTCCCTACTTTGGGATCCCCAATCCTCCTGCTCCTTGCCCCTGTCCACTTAGACAGGCTTGGGGAAGTTTGGATGCCCTCGTAGGCCGTCTTCGGGCTGCCTACGAGGAGCATGGTGGACGGCCCGAGACTAACCCTTTCGGGGCTCGGGCCGTCCGGCTTTACCTGAGGGAGGTCAGAGATTATCAGGCTAAAGCAAGGGGTGTTAGTTATGAGAAAAAGCGCAAGAGACCTCCCCCAAAGAAAAACCCAATTCAACTTGGTTTACCAACATTGAATTAA

mRNA sequence

ATGGATTTTATGATGAATAGTAATAATCCTATCTACAGCTATAGTGGAGATGGAGATGGAGGTGTAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAAGTGGGAGTTCTTTTACTCTAACTACTGGTGGTGGTAATGGTGGTGGTGGTGGTGGTGGTAGTGGTAGTGGTAGCGTTGGTTCTGTTGTGGGTTCAGAGTCAGGTGGGAGTAGCAACGAGCCGTCCCCACAACGGTCGGTCCAGTCCCTTCCTAGCAGGTACGAGAACCAGAAACGGAGGGACTGGAACACGTTTAGCCAGTACCTGAGAAGCCACCGGCCTCCTCTGCCGTTGTCACTGTGCAGCGGGACTCAAGTGTTAGAGTTCCTGAGGTACTTGGATCAGTTTGGAAAGACAAAAGTTCACAACCATGCTTGTCCCTACTTTGGGATCCCCAATCCTCCTGCTCCTTGCCCCTGTCCACTTAGACAGGCTTGGGGAAGTTTGGATGCCCTCGTAGGCCGTCTTCGGGCTGCCTACGAGGAGCATGGTGGACGGCCCGAGACTAACCCTTTCGGGGCTCGGGCCGTCCGGCTTTACCTGAGGGAGGTCAGAGATTATCAGGCTAAAGCAAGGGGTGTTAGTTATGAGAAAAAGCGCAAGAGACCTCCCCCAAAGAAAAACCCAATTCAACTTGGTTTACCAACATTGAATTAA

Coding sequence (CDS)

ATGGATTTTATGATGAATAGTAATAATCCTATCTACAGCTATAGTGGAGATGGAGATGGAGGTGTAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAAGTGGGAGTTCTTTTACTCTAACTACTGGTGGTGGTAATGGTGGTGGTGGTGGTGGTGGTAGTGGTAGTGGTAGCGTTGGTTCTGTTGTGGGTTCAGAGTCAGGTGGGAGTAGCAACGAGCCGTCCCCACAACGGTCGGTCCAGTCCCTTCCTAGCAGGTACGAGAACCAGAAACGGAGGGACTGGAACACGTTTAGCCAGTACCTGAGAAGCCACCGGCCTCCTCTGCCGTTGTCACTGTGCAGCGGGACTCAAGTGTTAGAGTTCCTGAGGTACTTGGATCAGTTTGGAAAGACAAAAGTTCACAACCATGCTTGTCCCTACTTTGGGATCCCCAATCCTCCTGCTCCTTGCCCCTGTCCACTTAGACAGGCTTGGGGAAGTTTGGATGCCCTCGTAGGCCGTCTTCGGGCTGCCTACGAGGAGCATGGTGGACGGCCCGAGACTAACCCTTTCGGGGCTCGGGCCGTCCGGCTTTACCTGAGGGAGGTCAGAGATTATCAGGCTAAAGCAAGGGGTGTTAGTTATGAGAAAAAGCGCAAGAGACCTCCCCCAAAGAAAAACCCAATTCAACTTGGTTTACCAACATTGAATTAA

Protein sequence

MDFMMNSNNPIYSYSGDGDGGVGGGGGGGGGGSGSSFTLTTGGGNGGGGGGGSGSGSVGSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQLGLPTLN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06447.1Spo06447.1mRNA


Homology
[Close]
BLAST of Spo06447.1 vs. NCBI nr
Match: gi|902223959|gb|KNA19653.1| (hypothetical protein SOVF_059640 [Spinacia oleracea])

HSP 1 Score: 442.6 bits (1137), Expect = 4.300e-121
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1 

		  

Query: 1   MDFMMNSNNPIYSYSGDGDGGVGGGGGGGGGGSGSSFTLTTGGGNGGGGGGGSGSGSVGS 60
           MDFMMNSNNPIYSYSGDGDGGVGGGGGGGGGGSGSSFTLTTGGGNGGGGGGGSGSGSVGS
Sbjct: 1   MDFMMNSNNPIYSYSGDGDGGVGGGGGGGGGGSGSSFTLTTGGGNGGGGGGGSGSGSVGS 60

Query: 61  VVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLE 120
           VVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLE
Sbjct: 61  VVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLE 120

Query: 121 FLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPE 180
           FLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPE
Sbjct: 121 FLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPE 180

Query: 181 TNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQLGLPTLN 231
           TNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQLGLPTLN
Sbjct: 181 TNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQLGLPTLN 230
[Close]
BLAST of Spo06447.1 vs. NCBI nr
Match: gi|731365396|ref|XP_010694503.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 323.2 bits (827), Expect = 3.800e-85
Identity = 179/232 (77.16%), Postives = 191/232 (82.33%), Query Frame = 1 

		  

Query: 1   MDFMMNS--NNPIYSYSGDGDGGVGGGGGGGGGGSGSSFTLTTGGGNGGGGGGGSGSGSV 60
           MDFMM++  NNPIYSYSG           GG     S+F+LTTG G+G G G  SG+G+ 
Sbjct: 1   MDFMMSNDGNNPIYSYSGMS---------GGTNIESSTFSLTTGSGSGSGSGSSSGAGT- 60

Query: 61  GSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQV 120
            +V GSE+        PQ SVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSG  V
Sbjct: 61  -AVAGSEAS------PPQPSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGGHV 120

Query: 121 LEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGR 180
           LEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGR
Sbjct: 121 LEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGR 180

Query: 181 PETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQLGLPTLN 231
           PETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRP PK+ P+ +GLPT N
Sbjct: 181 PETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPAPKQKPLGMGLPTSN 215
[Close]
BLAST of Spo06447.1 vs. NCBI nr
Match: gi|764596156|ref|XP_011465997.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 269.6 bits (688), Expect = 4.900e-69
Identity = 121/139 (87.05%), Postives = 129/139 (92.81%), Query Frame = 1 

		  

Query: 83  PSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLEFLRYLDQFGKTKVHNHACPYFG 142
           PSRYENQKRRDWNTF QYLR+HRPPL L +CSG  VLEFLRYLDQFGKTK+HNH CPYFG
Sbjct: 33  PSRYENQKRRDWNTFCQYLRNHRPPLTLPMCSGAHVLEFLRYLDQFGKTKIHNHNCPYFG 92

Query: 143 IPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPETNPFGARAVRLYLREVRDYQAK 202
           +PNPPAPCPCPLRQAWGSLDAL+GRLRAAYEEHGGRPE NPFGARAVRLYLREVRD+Q+K
Sbjct: 93  VPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRLYLREVRDFQSK 152

Query: 203 ARGVSYEKKRKRPPPKKNP 222
           ARGVSY+KKRKRP PK  P
Sbjct: 153 ARGVSYDKKRKRPKPKPTP 171
[Close]
BLAST of Spo06447.1 vs. NCBI nr
Match: gi|920683250|gb|KOM29995.1| (hypothetical protein LR48_Vigan845s002300 [Vigna angularis])

HSP 1 Score: 268.5 bits (685), Expect = 1.100e-68
Identity = 129/162 (79.63%), Postives = 139/162 (85.80%), Query Frame = 1 

		  

Query: 60  SVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVL 119
           S V S S GS+       S  S PSRYENQKRRDWNTF QYLR+HRPPL L+LCSG  VL
Sbjct: 29  SAVSSPSSGSN-------SGSSTPSRYENQKRRDWNTFCQYLRNHRPPLSLALCSGAHVL 88

Query: 120 EFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRP 179
           EFL YLDQFGKTKVHNH CP+FG+PNPPAPCPCPLRQAWGSLDAL+GRLRAAYEE+GGRP
Sbjct: 89  EFLHYLDQFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRP 148

Query: 180 ETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNP 222
           ETNPFGARAVR+YLR+VRD+QAKARGVSYEKKRKRP PK  P
Sbjct: 149 ETNPFGARAVRIYLRDVRDFQAKARGVSYEKKRKRPKPKLTP 183
[Close]
BLAST of Spo06447.1 vs. NCBI nr
Match: gi|356535206|ref|XP_003536139.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Glycine max])

HSP 1 Score: 267.7 bits (683), Expect = 1.900e-68
Identity = 128/165 (77.58%), Postives = 141/165 (85.45%), Query Frame = 1 

		  

Query: 57  SVGSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGT 116
           +  + V S S GS+N  S      + PSRYENQKRRDWNTF QYLR+HRPPL L+LCSG 
Sbjct: 14  TTAAAVSSPSSGSNNSGST-----TTPSRYENQKRRDWNTFCQYLRNHRPPLSLALCSGA 73

Query: 117 QVLEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHG 176
            VLEFL YLDQFGKTKVHNH CP+FG+PNPPAPCPCPLRQAWGSLDAL+GRLRAAYEE+G
Sbjct: 74  HVLEFLHYLDQFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENG 133

Query: 177 GRPETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNP 222
           GRPETNPFGARAVR+YLR+VRD+QAKARGVSYEKKRKRP PK  P
Sbjct: 134 GRPETNPFGARAVRIYLRDVRDFQAKARGVSYEKKRKRPKPKVTP 173
[Close]
BLAST of Spo06447.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJJ6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_059640 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 3.000e-121
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1 

		  

Query: 1   MDFMMNSNNPIYSYSGDGDGGVGGGGGGGGGGSGSSFTLTTGGGNGGGGGGGSGSGSVGS 60
           MDFMMNSNNPIYSYSGDGDGGVGGGGGGGGGGSGSSFTLTTGGGNGGGGGGGSGSGSVGS
Sbjct: 1   MDFMMNSNNPIYSYSGDGDGGVGGGGGGGGGGSGSSFTLTTGGGNGGGGGGGSGSGSVGS 60

Query: 61  VVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLE 120
           VVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLE
Sbjct: 61  VVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLE 120

Query: 121 FLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPE 180
           FLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPE
Sbjct: 121 FLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPE 180

Query: 181 TNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQLGLPTLN 231
           TNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQLGLPTLN
Sbjct: 181 TNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQLGLPTLN 230
[Close]
BLAST of Spo06447.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BED8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093590 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.600e-85
Identity = 179/232 (77.16%), Postives = 191/232 (82.33%), Query Frame = 1 

		  

Query: 1   MDFMMNS--NNPIYSYSGDGDGGVGGGGGGGGGGSGSSFTLTTGGGNGGGGGGGSGSGSV 60
           MDFMM++  NNPIYSYSG           GG     S+F+LTTG G+G G G  SG+G+ 
Sbjct: 1   MDFMMSNDGNNPIYSYSGMS---------GGTNIESSTFSLTTGSGSGSGSGSSSGAGT- 60

Query: 61  GSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQV 120
            +V GSE+        PQ SVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSG  V
Sbjct: 61  -AVAGSEAS------PPQPSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGGHV 120

Query: 121 LEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGR 180
           LEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGR
Sbjct: 121 LEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGR 180

Query: 181 PETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQLGLPTLN 231
           PETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRP PK+ P+ +GLPT N
Sbjct: 181 PETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPAPKQKPLGMGLPTSN 215
[Close]
BLAST of Spo06447.1 vs. UniProtKB/TrEMBL
Match: A0A0S3SQ06_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G158600 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 7.700e-69
Identity = 129/162 (79.63%), Postives = 139/162 (85.80%), Query Frame = 1 

		  

Query: 60  SVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVL 119
           S V S S GS+       S  S PSRYENQKRRDWNTF QYLR+HRPPL L+LCSG  VL
Sbjct: 29  SAVSSPSSGSN-------SGSSTPSRYENQKRRDWNTFCQYLRNHRPPLSLALCSGAHVL 88

Query: 120 EFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRP 179
           EFL YLDQFGKTKVHNH CP+FG+PNPPAPCPCPLRQAWGSLDAL+GRLRAAYEE+GGRP
Sbjct: 89  EFLHYLDQFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRP 148

Query: 180 ETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNP 222
           ETNPFGARAVR+YLR+VRD+QAKARGVSYEKKRKRP PK  P
Sbjct: 149 ETNPFGARAVRIYLRDVRDFQAKARGVSYEKKRKRPKPKLTP 183
[Close]
BLAST of Spo06447.1 vs. UniProtKB/TrEMBL
Match: A0A0L9THI5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan845s002300 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 7.700e-69
Identity = 129/162 (79.63%), Postives = 139/162 (85.80%), Query Frame = 1 

		  

Query: 60  SVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVL 119
           S V S S GS+       S  S PSRYENQKRRDWNTF QYLR+HRPPL L+LCSG  VL
Sbjct: 29  SAVSSPSSGSN-------SGSSTPSRYENQKRRDWNTFCQYLRNHRPPLSLALCSGAHVL 88

Query: 120 EFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRP 179
           EFL YLDQFGKTKVHNH CP+FG+PNPPAPCPCPLRQAWGSLDAL+GRLRAAYEE+GGRP
Sbjct: 89  EFLHYLDQFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRP 148

Query: 180 ETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNP 222
           ETNPFGARAVR+YLR+VRD+QAKARGVSYEKKRKRP PK  P
Sbjct: 149 ETNPFGARAVRIYLRDVRDFQAKARGVSYEKKRKRPKPKLTP 183
[Close]
BLAST of Spo06447.1 vs. UniProtKB/TrEMBL
Match: I1LBQ5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G166100 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.300e-68
Identity = 128/165 (77.58%), Postives = 141/165 (85.45%), Query Frame = 1 

		  

Query: 57  SVGSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGT 116
           +  + V S S GS+N  S      + PSRYENQKRRDWNTF QYLR+HRPPL L+LCSG 
Sbjct: 14  TTAAAVSSPSSGSNNSGST-----TTPSRYENQKRRDWNTFCQYLRNHRPPLSLALCSGA 73

Query: 117 QVLEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHG 176
            VLEFL YLDQFGKTKVHNH CP+FG+PNPPAPCPCPLRQAWGSLDAL+GRLRAAYEE+G
Sbjct: 74  HVLEFLHYLDQFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENG 133

Query: 177 GRPETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNP 222
           GRPETNPFGARAVR+YLR+VRD+QAKARGVSYEKKRKRP PK  P
Sbjct: 134 GRPETNPFGARAVRIYLRDVRDFQAKARGVSYEKKRKRPKPKVTP 173
[Close]
BLAST of Spo06447.1 vs. ExPASy Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.300e-64
Identity = 123/167 (73.65%), Postives = 135/167 (80.84%), Query Frame = 1 

		  

Query: 58  VGSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQ 117
           + +   + +  SS+  S   S  +  SRYENQKRRDWNTF QYLR+HRPPL LS CSG  
Sbjct: 21  IAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 80

Query: 118 VLEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGG 177
           VLEFLRYLDQFGKTKVH H CP+FG PNPPAPC CPLRQAWGSLDAL+GRLRAA+EE+GG
Sbjct: 81  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 140

Query: 178 RPETNPFGARAVRLYLREVRDYQAKARGVSYE-KKRKRPPPKKNPIQ 224
            PETNPFGARAVRLYLREVRD QAKARG+SYE KKRKRPPP   P Q
Sbjct: 141 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187
[Close]
BLAST of Spo06447.1 vs. ExPASy Swiss-Prot
Match: LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.200e-64
Identity = 121/164 (73.78%), Postives = 135/164 (82.32%), Query Frame = 1 

		  

Query: 70  SNEPS--PQRSVQSLP---SRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLEFLRY 129
           S++P+  P  S Q  P   SRYENQKRRDWNTF QYLR+HRPPL L  CSG  VLEFLRY
Sbjct: 5   SHQPNKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRY 64

Query: 130 LDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPETNPF 189
           LDQFGKTKVH+  C +FG+PNPPAPCPCPLRQAWGSLDAL+GRLRAAYEE+GG PE NPF
Sbjct: 65  LDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPF 124

Query: 190 GARAVRLYLREVRDYQAKARGVSYEKKRKR----PPPKKNPIQL 225
           G+RAVRL+LREVRD+QAKARGVSYEKKRKR     P  + P+QL
Sbjct: 125 GSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPPLQL 168
[Close]
BLAST of Spo06447.1 vs. ExPASy Swiss-Prot
Match: G1L1_ORYSI (Protein G1-like1 OS=Oryza sativa subsp. indica GN=OsI_05993 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.100e-63
Identity = 113/148 (76.35%), Postives = 128/148 (86.49%), Query Frame = 1 

		  

Query: 67  GGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLEFLRYLD 126
           G +S   SP     + PSRYE+QKRRDW TF QYLR+HRPPL LS CSG  VLEFLRYLD
Sbjct: 5   GMASPAESPGGGGTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLD 64

Query: 127 QFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPETNPFGA 186
           QFGKTKVH H CP+FG P+PPAPCPCPLRQAWGSLDALVGRLRAA+EEHGGRPE+NPFGA
Sbjct: 65  QFGKTKVHAHGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGA 124

Query: 187 RAVRLYLREVRDYQAKARGVSYEKKRKR 215
           RAVRLYLR++RD Q+KARG++YEKKR++
Sbjct: 125 RAVRLYLRDIRDTQSKARGIAYEKKRRK 152
[Close]
BLAST of Spo06447.1 vs. ExPASy Swiss-Prot
Match: G1L1_ORYSJ (Protein G1-like1 OS=Oryza sativa subsp. japonica GN=G1L1 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.100e-63
Identity = 113/148 (76.35%), Postives = 128/148 (86.49%), Query Frame = 1 

		  

Query: 67  GGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLEFLRYLD 126
           G +S   SP     + PSRYE+QKRRDW TF QYLR+HRPPL LS CSG  VLEFLRYLD
Sbjct: 5   GMASPAESPGGGGTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLD 64

Query: 127 QFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPETNPFGA 186
           QFGKTKVH H CP+FG P+PPAPCPCPLRQAWGSLDALVGRLRAA+EEHGGRPE+NPFGA
Sbjct: 65  QFGKTKVHAHGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGA 124

Query: 187 RAVRLYLREVRDYQAKARGVSYEKKRKR 215
           RAVRLYLR++RD Q+KARG++YEKKR++
Sbjct: 125 RAVRLYLRDIRDTQSKARGIAYEKKRRK 152
[Close]
BLAST of Spo06447.1 vs. ExPASy Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.100e-63
Identity = 121/167 (72.46%), Postives = 136/167 (81.44%), Query Frame = 1 

		  

Query: 55  SGSVGSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCS 114
           S +  SV G+  G ++   S   S  +  SRYENQKRRDWNTF QYLR+HRPPL LS CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 115 GTQVLEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEE 174
           G  VLEFLRYLDQFGKTKVH + C ++G PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 175 HGGRPETNPFGARAVRLYLREVRDYQAKARGVSYE-KKRKRPPPKKN 221
           +GG+PETNPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP P  +
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSS 190
[Close]
BLAST of Spo06447.1 vs. TAIR (Arabidopsis)
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 247.7 bits (631), Expect = 7.100e-66
Identity = 123/167 (73.65%), Postives = 135/167 (80.84%), Query Frame = 1 

		  

Query: 58  VGSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQ 117
           + +   + +  SS+  S   S  +  SRYENQKRRDWNTF QYLR+HRPPL LS CSG  
Sbjct: 21  IAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 80

Query: 118 VLEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGG 177
           VLEFLRYLDQFGKTKVH H CP+FG PNPPAPC CPLRQAWGSLDAL+GRLRAA+EE+GG
Sbjct: 81  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 140

Query: 178 RPETNPFGARAVRLYLREVRDYQAKARGVSYE-KKRKRPPPKKNPIQ 224
            PETNPFGARAVRLYLREVRD QAKARG+SYE KKRKRPPP   P Q
Sbjct: 141 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187
[Close]
BLAST of Spo06447.1 vs. TAIR (Arabidopsis)
Match: AT5G28490.1 (Protein of unknown function (DUF640))

HSP 1 Score: 245.0 bits (624), Expect = 4.600e-65
Identity = 121/164 (73.78%), Postives = 135/164 (82.32%), Query Frame = 1 

		  

Query: 70  SNEPS--PQRSVQSLP---SRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLEFLRY 129
           S++P+  P  S Q  P   SRYENQKRRDWNTF QYLR+HRPPL L  CSG  VLEFLRY
Sbjct: 5   SHQPNKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRY 64

Query: 130 LDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPETNPF 189
           LDQFGKTKVH+  C +FG+PNPPAPCPCPLRQAWGSLDAL+GRLRAAYEE+GG PE NPF
Sbjct: 65  LDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPF 124

Query: 190 GARAVRLYLREVRDYQAKARGVSYEKKRKR----PPPKKNPIQL 225
           G+RAVRL+LREVRD+QAKARGVSYEKKRKR     P  + P+QL
Sbjct: 125 GSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPPLQL 168
[Close]
BLAST of Spo06447.1 vs. TAIR (Arabidopsis)
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 242.7 bits (618), Expect = 2.300e-64
Identity = 121/167 (72.46%), Postives = 136/167 (81.44%), Query Frame = 1 

		  

Query: 55  SGSVGSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCS 114
           S +  SV G+  G ++   S   S  +  SRYENQKRRDWNTF QYLR+HRPPL LS CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 115 GTQVLEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEE 174
           G  VLEFLRYLDQFGKTKVH + C ++G PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 175 HGGRPETNPFGARAVRLYLREVRDYQAKARGVSYE-KKRKRPPPKKN 221
           +GG+PETNPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP P  +
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSS 190
[Close]
BLAST of Spo06447.1 vs. TAIR (Arabidopsis)
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 236.1 bits (601), Expect = 2.100e-62
Identity = 111/146 (76.03%), Postives = 127/146 (86.99%), Query Frame = 1 

		  

Query: 69  SSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCSGTQVLEFLRYLDQF 128
           S+  PS   S  S  SRYENQKRRDWNTF QYLR+H PPL L+ CSG  VL+FLRYLDQF
Sbjct: 18  STQTPSSFSSPPS-SSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQF 77

Query: 129 GKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEEHGGRPETNPFGARA 188
           GKTKVH+  C +FG+PNPPAPCPCPLRQAWGSLDAL+GRLRAAYEE+GG PET+PFG+R+
Sbjct: 78  GKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRS 137

Query: 189 VRLYLREVRDYQAKARGVSYEKKRKR 215
           VR++LREVRD+QAK+RGVSYEKKRKR
Sbjct: 138 VRIFLREVRDFQAKSRGVSYEKKRKR 162
[Close]
BLAST of Spo06447.1 vs. TAIR (Arabidopsis)
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 226.5 bits (576), Expect = 1.700e-59
Identity = 110/170 (64.71%), Postives = 133/170 (78.24%), Query Frame = 1 

		  

Query: 55  SGSVGSVVGSESGGSSNEPSPQRSVQSLPSRYENQKRRDWNTFSQYLRSHRPPLPLSLCS 114
           SG    V G + G     PS   S  + PSRYE+QKRRDWNTF QYL++H+PPL LS CS
Sbjct: 6   SGRSDPVKGDDPG-----PSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCS 65

Query: 115 GTQVLEFLRYLDQFGKTKVHNHACPYFGIPNPPAPCPCPLRQAWGSLDALVGRLRAAYEE 174
           G  V+EFL+YLDQFGKTKVH  ACPYFG   PP+PC CPL+QAWGSLDAL+GRLRAAYEE
Sbjct: 66  GAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEE 125

Query: 175 HGGRPETNPFGARAVRLYLREVRDYQAKARGVSYEKKRKRPPPKKNPIQL 225
           +GGRP++NPF ARAVR+YLREVR+ QAKARG+ YEKK+++ PP    +++
Sbjct: 126 NGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKRPPTVTTVRV 170
The following BLAST results are available for this feature:
BLAST of Spo06447.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902223959|gb|KNA19653.1|4.3e-121100.hypothetical protein SOVF_0596... [more]
gi|731365396|ref|XP_010694503.1|3.8e-8577.1PREDICTED: protein LIGHT-DEPEN... [more]
gi|764596156|ref|XP_011465997.1|4.9e-6987.0PREDICTED: protein LIGHT-DEPEN... [more]
gi|920683250|gb|KOM29995.1|1.1e-6879.6hypothetical protein LR48_Viga... [more]
gi|356535206|ref|XP_003536139.1|1.9e-6877.5PREDICTED: protein LIGHT-DEPEN... [more]
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BLAST of Spo06447.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RJJ6_SPIOL3.0e-121100.Uncharacterized protein OS=Spi... [more]
A0A0J8BED8_BETVU2.6e-8577.1Uncharacterized protein OS=Bet... [more]
A0A0S3SQ06_PHAAN7.7e-6979.6Uncharacterized protein OS=Vig... [more]
A0A0L9THI5_PHAAN7.7e-6979.6Uncharacterized protein OS=Pha... [more]
I1LBQ5_SOYBN1.3e-6877.5Uncharacterized protein OS=Gly... [more]
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BLAST of Spo06447.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSH4_ARATH1.3e-6473.6Protein LIGHT-DEPENDENT SHORT ... [more]
LSH1_ARATH8.2e-6473.7Protein LIGHT-DEPENDENT SHORT ... [more]
G1L1_ORYSI3.1e-6376.3Protein G1-like1 OS=Oryza sati... [more]
G1L1_ORYSJ3.1e-6376.3Protein G1-like1 OS=Oryza sati... [more]
LSH3_ARATH4.1e-6372.4Protein LIGHT-DEPENDENT SHORT ... [more]
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BLAST of Spo06447.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G23290.27.1e-6673.6Protein of unknown function (D... [more]
AT5G28490.14.6e-6573.7Protein of unknown function (D... [more]
AT2G31160.12.3e-6472.4Protein of unknown function (D... [more]
AT3G04510.12.1e-6276.0Protein of unknown function (D... [more]
AT1G07090.11.7e-5964.7Protein of unknown function (D... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 79..198
score: 4.8
IPR006936ALOG domainPROFILEPS51697ALOGcoord: 85..212
score: 81
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 1..223
score: 1.5E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0006094 gluconeogenesis
biological_process GO:0009407 toxin catabolic process
biological_process GO:0009651 response to salt stress
biological_process GO:0051788 response to misfolded protein
biological_process GO:0046686 response to cadmium ion
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0006096 glycolytic process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0080167 response to karrikin
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0042545 cell wall modification
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005576 extracellular region
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo012040.71Barchart | Table
Spo019140.70Barchart | Table
Spo121760.69Barchart | Table
Spo015780.68Barchart | Table
Spo148490.67Barchart | Table