Spo13875 (gene) | SpinachBase

Overview


Name	Spo13875
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 49856932 .. 49857917 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCAGAATTTTCCATTGCTCTTCGATGTTCTTATTCGTTTTCCGGTAAGAAGGTGATCGCGAAATTCATAGAAGTTGGAGGAGAGGCGAAGGTGATCGCGAGCTTGAGAGGCAGAGAGATGGTGGAGAGAATCGCGAGTTGGAGGCAGAGCAGAGAGCTGGTTTATTTGGTGAAAGTGATTGCGTGTAATTAAGGTATGCGGCTGCCTTTTTATTTTTTGGCACGTGTGGGCCTTGGGTCCACAGTAAATTAATGGTGGACCTGGTCCATACAAGAATTTTTCCAATTCTAAACAGCGCCGTAGTGACTCAGATTCAGACTCGAACTCGGATTCGCACCAAAAAGAGAGGAGGTGGTGTCGTAGACAAGTCAGTCGATTAGGGGGTCATTACCGTGCTGTCAGCATTAATGGGTCACCTCTGTAATCTCTAACCAGTAAACGTGAAAGAGAGAAAAAATTGCAACAACAAAAAAAGTGAACTCAACAACACATTTCAGCTCAGCCCACCCCACCCTTCAACAAAAAGAAAACACAACCCTTTATTATTTTGCTTTTTATTTTTGGTGTTCTTACAGAAAAGGGTAGAGAGCGTGGGAGAATATAGATCCAAATATCTCCGAATTTTTGGAGAGAGAAAGTGAGTCAATCACAGCCATTCTACTCATTTTATTACCAACTCCCACCAACTGAGTAGTAACCTGGAATTTTCAGGATTATTACTCAGGTTTATTTTTGAATATTTCTGCAGTCTTTGTGCTTTTCCTCAGGTACTTAATCCCTGTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTAAATTAATGTGATGCGTTCATAAAAGTTTTGATTTTTTTTGTTGGGTTTTAGAATCTAGCTATTGGGTTGGTTGATGCAAAATTAAAGGTGTTATTTGATTCACTGTGCTTGTAGTTGAATAATTTGTTTAATTTGCATTTTTTTTGTTTATCCATTTGCAGATTTGA

mRNA sequence

ATGACTTCAGAATTTTCCATTGCTCTTCGATGTTCTTATTCGTTTTCCGGTAAGAAGGTGATCGCGAAATTCATAGAAGTTGGAGGAGAGGCGAAGGTGATCGCGAGCTTGAGAGGCAGAGAGATGGTGGAGAGAATCGCGAGTTGGAGGCAGAGCAGAGAGCTGGTTTATTTGGTGAAAGTGATTGCGTTAAACGTGAAAGAGAGAAAAAATTGCAACAACAAAAAAAGTGAACTCAACAACACATTTCAGCTCAGCCCACCCCACCCTTCAACAAAAAGAAAACACAACCCTTTATTATTTTGCTTTTTATTTTTGGTGTTCTTACAGAAAAGGGTAGAGAGCGTGGGAGAATATAGATCCAAATATCTCCGAATTTTTGGAGAGAGAAATCTTTGTGCTTTTCCTCAGATTTGA

Coding sequence (CDS)

ATGACTTCAGAATTTTCCATTGCTCTTCGATGTTCTTATTCGTTTTCCGGTAAGAAGGTGATCGCGAAATTCATAGAAGTTGGAGGAGAGGCGAAGGTGATCGCGAGCTTGAGAGGCAGAGAGATGGTGGAGAGAATCGCGAGTTGGAGGCAGAGCAGAGAGCTGGTTTATTTGGTGAAAGTGATTGCGTTAAACGTGAAAGAGAGAAAAAATTGCAACAACAAAAAAAGTGAACTCAACAACACATTTCAGCTCAGCCCACCCCACCCTTCAACAAAAAGAAAACACAACCCTTTATTATTTTGCTTTTTATTTTTGGTGTTCTTACAGAAAAGGGTAGAGAGCGTGGGAGAATATAGATCCAAATATCTCCGAATTTTTGGAGAGAGAAATCTTTGTGCTTTTCCTCAGATTTGA

Protein sequence

MTSEFSIALRCSYSFSGKKVIAKFIEVGGEAKVIASLRGREMVERIASWRQSRELVYLVKVIALNVKERKNCNNKKSELNNTFQLSPPHPSTKRKHNPLLFCFLFLVFLQKRVESVGEYRSKYLRIFGERNLCAFPQI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo13875.1	Spo13875.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo13875.1 vs. NCBI nr
BLAST of Spo13875.1 vs. UniProtKB/TrEMBL
BLAST of Spo13875.1 vs. ExPASy Swiss-Prot
BLAST of Spo13875.1 vs. TAIR (Arabidopsis)

BLAST of Spo13875.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo13875.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo13875.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo13875.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0061025	membrane fusion
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo07184	0.68	Barchart \| Table
Spo19690	0.67	Barchart \| Table
Spo06506	0.67	Barchart \| Table
Spo09671	0.67	Barchart \| Table
Spo14096	0.67	Barchart \| Table
Spo19245	0.66	Barchart \| Table
Spo15842	0.66	Barchart \| Table
Spo25107	0.65	Barchart \| Table
Spo01104	0.65	Barchart \| Table
Spo02792	0.65	Barchart \| Table
Spo03107	0.65	Barchart \| Table
Spo21600	0.65	Barchart \| Table
Spo00863	0.65	Barchart \| Table