Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATTGTGGCAATGCGTTTTACATTCATCATCTTCAACTAATTTAGGTAACATCATTTACTTCCATTTCAACACTTTGCCAATGCAACTTGCTTACCACAACTCACACTCAAAAATAGTATATATACATGTAGTATTAGCTACAACTAAGTATACCAAACCGACAAAACAACCCTCCTCACAATATGTCTCCCTTTGTTATCTTAACCTCCTTCCTTCTCCTCCTCCTCGCCACCGGAGTTACCGCGGTCACTTACTCGGTCACCAACACCGCCACCAACACCGCTGGCGGAACCCGATTCAACAATGAAGTTGGGTCTGACTATGCTCGACAAACTCTTTCATCTGCCACGGACTTTATTTGGAATACTTTTCAACAAACTAACCCGGCTGACCGTAAAAGCACTATCCAACAGGTTACTCTCTAATTCTATTTACCATATTTTTTAAGCATTTGTTCTAAGACAATTTAGAAAAACTTAAGTGTTAAATTATGCAACTCAATTCAAATTTCTAGCTACAATTAATTTAAGCTACAAAGTTTTACATTGGTTGGCTACAATACTTTGTAGGTCCCTGTACTTATTTTAATTTATTTATTTGATCCAAAATAAATTATTCAATTTCCAACAAGATTTTGAGCTACCTGCTCAAAAAAGGTATAAAATTTAATAGTTAATTATGTCACTGATGTATCAACGGTTGGCTACCCACTCACATATTTTTATTTTTTTGTGAGCAAGTCCTTTTTTTGACCACTGAAGTTGCTCAAATCAAATACTTTCTCTTTTCTTAGATGAACTATTATAAAAACATGTTTGTCAATGAACATCTAACCATTGATATTTTCACCAAGTAAAAGTTATTACGCATTATATACAATTGAATTCTTTAAAATATATATTGGGGCGAATCTAACAAGACCTCGCGTGACTTTTTTTAAGATAAATCACTAAAGTTAGTCAAACTGGATTTTGGTAAATAGTGAAGAAGTCATGTGTGTCAATCTGTCATTAAAATGAAAGGATAGATTATGGGGTACGACTATACATAGGTTTTTTTAATTGGGTGATGGAAGATTGGATCATTGGAATGTTATACTCCGTAGTAGTCTAATAATGGCATGCAAAGTAATCAATCGTATACGTGTGCATTAAATAGTGTTGATCGACGGATCATGTATAAATCTATAACAAAATAAGAAGACTTTTTTCAAGAGCAACAACAAATGTTATCTATCTATAATATATATTAAAAGCAGTTTGCAATCAAGTTCATCTGTCACGTTGCGCTCTCCCTCTTTCCTCTCTAAAGAGTCTTACTCCATGCAATTACATACAATAAAAAATAAAAATATTGTTTAATATAAGACTCGAACTCTCAACCTCAAGTTTCAAACAATAAAGACTTATCCACCAACCTATATGTCACATTAGATTTCTTTCTTTACAAACAAAATATAATAAATGACAAAATAGTAAAGAAAGAAAATAATAGACGCATTTAATCACATTCTTTTTATGTAGTAGCATAAATATGATTTTTTATGTAATGACCCGGGGCATCGCCCGGGATCAAAAACTAGTAGTAAAATAATTAGTCGTTCAATTCTATTGCTTCACGAAATTCAATATCTTAATTTATAAATTAAAAAATGTAACAGGTGAGCCTTACAGTAGAGACCATGGACGGGGTAGCCTACACAAGCAACGACCAAATCCACTTGAGTGCGAACTATGTGCAAGGCTACTCAGGCAACGTGAAGACTGAAGTAACGGGTGTATTGTACCACGAAATGACCCATGTGTGGCAATGGACCGGGAATGGGCAAGCCCCGGGTGGGTTGATTGAGGGGATCGCGGATTATGTGAGGCTTAAGGCTGGTTATGCTCCGTCTCATTGGGTTAGAGCCGGTCAAGGTAACAGGTGGGATCAAGGTTATGATGTTACGGCCAGGTTCCTAGACTATTGTAACAGTTTGAGAAACGGGTTTGTGGCCGAGCTTAACAAGAAAATGAGGGGTGGGTATAGTGATGCTTTCTTCAATGATTTGTTAGGTAAGTCTGTAAATCAGCTTTGGACTGATTATAAGGCCAAGTTCAACAATTAAGTTAATTAAATTATGATGTAAGTCATGTAACACTCAATATACTTGTATTACGTCGCACTAAAAAAAATATTTATATACTTGTTGTACTTAGAAGCTAAGCAGAAGAATAACCGATAATTGTAATAAAGTACCATTATCAAATACTTCATGAC AAAAATTGTGGCAATGCGTTTTACATTCATCATCTTCAACTAATTTAGGTAACATCATTTACTTCCATTTCAACACTTTGCCAATGCAACTTGCTTACCACAACTCACACTCAAAAATAGTATATATACATGTAGTATTAGCTACAACTAAGTATACCAAACCGACAAAACAACCCTCCTCACAATATGTCTCCCTTTGTTATCTTAACCTCCTTCCTTCTCCTCCTCCTCGCCACCGGAGTTACCGCGGTCACTTACTCGGTCACCAACACCGCCACCAACACCGCTGGCGGAACCCGATTCAACAATGAAGTTGGGTCTGACTATGCTCGACAAACTCTTTCATCTGCCACGGACTTTATTTGGAATACTTTTCAACAAACTAACCCGGCTGACCGTAAAAGCACTATCCAACAGGTGAGCCTTACAGTAGAGACCATGGACGGGGTAGCCTACACAAGCAACGACCAAATCCACTTGAGTGCGAACTATGTGCAAGGCTACTCAGGCAACGTGAAGACTGAAGTAACGGGTGTATTGTACCACGAAATGACCCATGTGTGGCAATGGACCGGGAATGGGCAAGCCCCGGGTGGGTTGATTGAGGGGATCGCGGATTATGTGAGGCTTAAGGCTGGTTATGCTCCGTCTCATTGGGTTAGAGCCGGTCAAGGTAACAGGTGGGATCAAGGTTATGATGTTACGGCCAGGTTCCTAGACTATTGTAACAGTTTGAGAAACGGGTTTGTGGCCGAGCTTAACAAGAAAATGAGGGGTGGGTATAGTGATGCTTTCTTCAATGATTTGTTAGGTAAGTCTGTAAATCAGCTTTGGACTGATTATAAGGCCAAGTTCAACAATTAAGTTAATTAAATTATGATGTAAGTCATGTAACACTCAATATACTTGTATTACGTCGCACTAAAAAAAATATTTATATACTTGTTGTACTTAGAAGCTAAGCAGAAGAATAACCGATAATTGTAATAAAGTACCATTATCAAATACTTCATGAC ATGTCTCCCTTTGTTATCTTAACCTCCTTCCTTCTCCTCCTCCTCGCCACCGGAGTTACCGCGGTCACTTACTCGGTCACCAACACCGCCACCAACACCGCTGGCGGAACCCGATTCAACAATGAAGTTGGGTCTGACTATGCTCGACAAACTCTTTCATCTGCCACGGACTTTATTTGGAATACTTTTCAACAAACTAACCCGGCTGACCGTAAAAGCACTATCCAACAGGTGAGCCTTACAGTAGAGACCATGGACGGGGTAGCCTACACAAGCAACGACCAAATCCACTTGAGTGCGAACTATGTGCAAGGCTACTCAGGCAACGTGAAGACTGAAGTAACGGGTGTATTGTACCACGAAATGACCCATGTGTGGCAATGGACCGGGAATGGGCAAGCCCCGGGTGGGTTGATTGAGGGGATCGCGGATTATGTGAGGCTTAAGGCTGGTTATGCTCCGTCTCATTGGGTTAGAGCCGGTCAAGGTAACAGGTGGGATCAAGGTTATGATGTTACGGCCAGGTTCCTAGACTATTGTAACAGTTTGAGAAACGGGTTTGTGGCCGAGCTTAACAAGAAAATGAGGGGTGGGTATAGTGATGCTTTCTTCAATGATTTGTTAGGTAAGTCTGTAAATCAGCTTTGGACTGATTATAAGGCCAAGTTCAACAATTAA MSPFVILTSFLLLLLATGVTAVTYSVTNTATNTAGGTRFNNEVGSDYARQTLSSATDFIWNTFQQTNPADRKSTIQQVSLTVETMDGVAYTSNDQIHLSANYVQGYSGNVKTEVTGVLYHEMTHVWQWTGNGQAPGGLIEGIADYVRLKAGYAPSHWVRAGQGNRWDQGYDVTARFLDYCNSLRNGFVAELNKKMRGGYSDAFFNDLLGKSVNQLWTDYKAKFNN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04330.1 vs. NCBI nr
Match: gi|902194625|gb|KNA12593.1| (hypothetical protein SOVF_124460 isoform A [Spinacia oleracea]) HSP 1 Score: 456.8 bits (1174), Expect = 2.100e-125 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1
BLAST of Spo04330.1 vs. NCBI nr
Match: gi|902194627|gb|KNA12595.1| (hypothetical protein SOVF_124460 isoform C [Spinacia oleracea]) HSP 1 Score: 401.7 bits (1031), Expect = 8.200e-109 Identity = 193/221 (87.33%), Postives = 207/221 (93.67%), Query Frame = 1
BLAST of Spo04330.1 vs. NCBI nr
Match: gi|731360154|ref|XP_010691662.1| (PREDICTED: uncharacterized protein LOC104904936 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 381.7 bits (979), Expect = 8.700e-103 Identity = 185/224 (82.59%), Postives = 205/224 (91.52%), Query Frame = 1
BLAST of Spo04330.1 vs. NCBI nr
Match: gi|731360152|ref|XP_010691661.1| (PREDICTED: uncharacterized protein LOC104904935 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 374.4 bits (960), Expect = 1.400e-100 Identity = 182/225 (80.89%), Postives = 204/225 (90.67%), Query Frame = 1
BLAST of Spo04330.1 vs. NCBI nr
Match: gi|698424816|ref|XP_009784386.1| (PREDICTED: uncharacterized protein LOC104232799 [Nicotiana sylvestris]) HSP 1 Score: 336.3 bits (861), Expect = 4.200e-89 Identity = 158/220 (71.82%), Postives = 191/220 (86.82%), Query Frame = 1
BLAST of Spo04330.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0X3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_124460 PE=4 SV=1) HSP 1 Score: 456.8 bits (1174), Expect = 1.500e-125 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1
BLAST of Spo04330.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZA9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_124460 PE=4 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 5.700e-109 Identity = 193/221 (87.33%), Postives = 207/221 (93.67%), Query Frame = 1
BLAST of Spo04330.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BM37_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223700 PE=4 SV=1) HSP 1 Score: 381.7 bits (979), Expect = 6.100e-103 Identity = 185/224 (82.59%), Postives = 205/224 (91.52%), Query Frame = 1
BLAST of Spo04330.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMB6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223710 PE=4 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 9.700e-101 Identity = 182/225 (80.89%), Postives = 204/225 (90.67%), Query Frame = 1
BLAST of Spo04330.1 vs. UniProtKB/TrEMBL
Match: A5BS35_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038846 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 5.000e-89 Identity = 160/221 (72.40%), Postives = 184/221 (83.26%), Query Frame = 1
BLAST of Spo04330.1 vs. ExPASy Swiss-Prot
Match: BSP_BOSSE (Basic secretory protease (Fragments) OS=Boswellia serrata PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.800e-8 Identity = 30/58 (51.72%), Postives = 35/58 (60.34%), Query Frame = 1
BLAST of Spo04330.1 vs. TAIR (Arabidopsis)
Match: AT2G15220.1 (Plant basic secretory protein (BSP) family protein) HSP 1 Score: 293.9 bits (751), Expect = 8.500e-80 Identity = 141/213 (66.20%), Postives = 168/213 (78.87%), Query Frame = 1
BLAST of Spo04330.1 vs. TAIR (Arabidopsis)
Match: AT2G15130.1 (Plant basic secretory protein (BSP) family protein) HSP 1 Score: 266.2 bits (679), Expect = 1.900e-71 Identity = 128/213 (60.09%), Postives = 158/213 (74.18%), Query Frame = 1
BLAST of Spo04330.1 vs. TAIR (Arabidopsis)
Match: AT2G15170.1 (Plant basic secretory protein (BSP) family protein) HSP 1 Score: 64.3 bits (155), Expect = 1.100e-10 Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04330.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo04330.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo04330.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo04330.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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