Spo10512 (gene) | SpinachBase

Overview


Name	Spo10512
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 61791892 .. 61792259 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCTTGTGGGGAAGAGATCAGAGCCATTCAGAGGAGGAGGAGAACTCAGCGGGCTATATATGAAGGGTATTTCATATATAGAGATATTGAATCTAACTGTGCAACCCTCCACAGTCTCTACCAAGCAAATACCATTAACGAGGTATCAAGAAAAAGTCATTTTCAATCTCAATTTCCAGTTTCATACCCTTCAATAGTTCCCTTATTTGCAGCTCCACGTTCTAATTTGAGCTTCTGTTTGTAACAGTTGGCTATCTTCTGATCCAGCTCATAGTAAACTTCCATTTTATTTAGGGGTTTCATGTCAAGGTCGATGAAAAATGCCTGCAAGAGTGCGTAGATCACAACTCACAAGGAACTTAG

mRNA sequence

ATGAGATCTTGTGGGGAAGAGATCAGAGCCATTCAGAGGAGGAGGAGAACTCAGCGGGCTATATATGAAGGGTATTTCATATATAGAGATATTGAATCTAACTGTGCAACCCTCCACAGTCTCTACCAAGCAAATACCATTAACGAGGGGTTTCATGTCAAGGTCGATGAAAAATGCCTGCAAGAGTGCGTAGATCACAACTCACAAGGAACTTAG

Coding sequence (CDS)

ATGAGATCTTGTGGGGAAGAGATCAGAGCCATTCAGAGGAGGAGGAGAACTCAGCGGGCTATATATGAAGGGTATTTCATATATAGAGATATTGAATCTAACTGTGCAACCCTCCACAGTCTCTACCAAGCAAATACCATTAACGAGGGGTTTCATGTCAAGGTCGATGAAAAATGCCTGCAAGAGTGCGTAGATCACAACTCACAAGGAACTTAG

Protein sequence

MRSCGEEIRAIQRRRRTQRAIYEGYFIYRDIESNCATLHSLYQANTINEGFHVKVDEKCLQECVDHNSQGT

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo10512.1	Spo10512.1	mRNA

Homology

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BLAST of Spo10512.1 vs. NCBI nr
Match: gi|902218271|gb|KNA17981.1| (hypothetical protein SOVF_074920 [Spinacia oleracea])

HSP 1 Score: 101.7 bits (252), Expect = 5.500e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1

		  
Query: 1  MRSCGEEIRAIQRRRRTQRAIYEGYFIYRDIESNCATLHSLYQANTINE 50
          MRSCGEEIRAIQRRRRTQRAIYEGYFIYRDIESNCATLHSLYQANTINE
Sbjct: 1  MRSCGEEIRAIQRRRRTQRAIYEGYFIYRDIESNCATLHSLYQANTINE 49

[Close]

BLAST of Spo10512.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REQ6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_074920 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.800e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1

		  
Query: 1  MRSCGEEIRAIQRRRRTQRAIYEGYFIYRDIESNCATLHSLYQANTINE 50
          MRSCGEEIRAIQRRRRTQRAIYEGYFIYRDIESNCATLHSLYQANTINE
Sbjct: 1  MRSCGEEIRAIQRRRRTQRAIYEGYFIYRDIESNCATLHSLYQANTINE 49

The following BLAST results are available for this feature:

BLAST of Spo10512.1 vs. NCBI nr
BLAST of Spo10512.1 vs. UniProtKB/TrEMBL
BLAST of Spo10512.1 vs. ExPASy Swiss-Prot
BLAST of Spo10512.1 vs. TAIR (Arabidopsis)

BLAST of Spo10512.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902218271\|gb\|KNA17981.1\|	5.5e-19	100.	hypothetical protein SOVF_0749...	[more]

BLAST of Spo10512.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9REQ6_SPIOL	3.8e-19	100.	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo10512.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo10512.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0015078	proton transmembrane transporter activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo20930	0.70	Barchart \| Table
Spo14942	0.69	Barchart \| Table
Spo03149	0.69	Barchart \| Table
Spo21600	0.68	Barchart \| Table
Spo08997	0.68	Barchart \| Table
Spo23332	0.67	Barchart \| Table
Spo10500	0.67	Barchart \| Table
Spo24736	0.67	Barchart \| Table
Spo04142	0.67	Barchart \| Table
Spo23712	0.66	Barchart \| Table
Spo09387	0.66	Barchart \| Table
Spo17726	0.66	Barchart \| Table
Spo18285	0.66	Barchart \| Table
Spo20912	0.66	Barchart \| Table
Spo13281	0.66	Barchart \| Table
Spo08182	0.66	Barchart \| Table
Spo16186	0.65	Barchart \| Table
Spo02280	0.65	Barchart \| Table
Spo16960	0.65	Barchart \| Table