Spo01262 (gene) | SpinachBase

Overview


Name	Spo01262
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	40S ribosomal S30-like protein
Location	chr4 : 74658655 .. 74665686 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGGATGGAGTATCATCCACATTCACGACCGCGTCAACTTGTTCTTCCACCTTCAACTTCATGATGTTCACATGTTCCTCCAATTATCTGAATTTTTAAGCTTCACATGTTCAACTACAACAAACAGTTTTGAGCACATAATTTTTTGGTAATATACATGACAATGCTTAACTTTAAGCTGGTCAGAAATGAAATCAATGTTTTAAAAATTTCAAGCAACAAAAAAAAGCTAGCTTTACTCCCCTTCGGTCTAATGGGCTTTGCAATCTCTATTAACTTACATCTCCACCTTATAATGGAAAAGAATTTTTAAAAAGCAAATGAAGTTGAGATAGTAACATCTCAACTCCTAATTGGCAATGACGTTGATATTCCATTTCCATCAACATAGGATTTATCATTGGTGGACTAATTTTTGTAAACACAAAAAGACTAACATAAAAAATATGCAACCAATTTGGATATCACAACCAAATCGAATAATCATCATCATCACTGTTTTGTCAAATTTGGTCTAATTAAAAAATTTATTCTCAGACAAAAACCCTAAAAAATCGAAAACCCTAAGAAAAAATGGTTTGATTATGAAACTCAGACAAATCACAATGGAATACGAAGATTTCTCAGCAATTATATAACATCTAACTCTAATCATCTTAACAACAAATATAAACAACATAAATTATTAATCATACAAAAAAATCGAATGAAAGTTTTAAAAAGACTTACTTGGATGTTGAATCAGAGTGGGTGATCGACTAGCGTCGTCGGGGATCGACGAGCGGCGCAGTGGTGAGTGGAGGAGGCGCCGTGTGAGAGATTAGGGTTTCACCGTTTCAGTTTAGAGAGAGAGAGTGAGAGAGAGTGACTGAGTGAGAGACTGAGAGAATGAGAGATAGGCGTGAGAAATTCTAGGGTTTTCTTAGACCTAAAGGCTAAAGCCCAAACAAAAGAAGCCCAGAAATAATTAAAGATTTTTAGTAATTTTTTAAAAAAACATCTAAACGGGTTAGCGGGTTGGGTTAGCGGGTTGACAGGTTGACGGGTTGGCGGGTTGACCTGTGACCCAATAATTAAACGGGTTAGGCGGGTTGCTTTCGGGTTGGAGTTTTCAACCTGACCCAACCTATTTATTAAACGGGTTGGGTTGGGTCGACCTGTTTAGTTAAACGGGTTGAAAAATCTTGACCCAACCCAATAATAACGGGTTGGGTTCGGGTCGGGTTGGTGGGTTGGGTCAGCTTTTGCCAGCTCTAGAATTAAGATCAAATATGGGTATGATACCTTATTTGATCAACTACCATAAAACCACAACCGTTTCAAATCAACTATTTATTTAGTATTCTATTAATTAATTCAATTGATGAAAACGGTCAAAAGTAAATTGAGGAAAATGAAGAATTAAGAAAGAATTCATTACCTTGTATGAATCAATTCATGGTTTCAATGTCACTTTATTTGCTGAAAACGGTTAGAGGGTAGATGGATTGAGAAGTGAATTTAATTAATGGTTGAAGGTATCTCAATTAAATGGGCATTTGATTTGAAGGGTGAAGGAAAAATATGAAGGGGATGGGATCATGGAAGATGAGGGGAGGCTGAAAACGGGGAAATGAATAAAGGGGAAAAGGGAGAAAATTTTGGTGAAAATACAAAATGACACGTGGCAGATGTGGTTAGGATTTTATAAAAGAAAAGATGACATGTGGCAGATGTGGTTTGGGTTTTTATAGACTAGGTATAGATTGTATTGATTTTTGGTTGTTAATAACATCACATAACCTTGGATGATGCGACGTAAGCAGGAGAGTTCTATGTGACACATAAATATTTTTCGCAATGCCTTTTAATATATTAGTATAGATAGATAAGGAAGGCGTTACGCCGCTGTTGATGATGATCCAAAGGTGGAGTGTTGGCGTTAGTTGGGTTTCAATGTTAGTGCATGCTTGACTACTTCAACTAAGAATATGAATAATATGAAGAAGACGGTGGTTGGAAATGAGTGTCATGGGCTCAAGGGCATTCTTAGTTTATTGGGCATGACAAAGAAGTCGGTTTTTCTTGGGTTGAGAGAGTAAGATGTAATAGAGTGAGGGAGTCGGTTATTTTTTTTTTGGGAAACAAATCGTGTTATGTCAAGTAGTGGAATGATCAATTATGATTAAAACCGATTTTTAGAGTGTTTAAATTTTGAAATGTTGGGGGTGTAAATGTACTTTTGGCCGGAGTGACGAATGAGAATGGTTAGATGAGGTTTTGGAGGCTTTGCCTTAAGGCCCTATTTGGTTAGGAGCTGTTAATTATTATCTGGTCTGATTAGCTGTTAGTTGTTTGTATTAGCTTGTTTGACTAGCTGGTTGAATTAGTTGTTTGTGTAACAGTGTTTGGTAAATTAGCTGTGAGCTGGTAGCTGTTTAATATATAAAATGACCATTAAGGAAATTGATATAATTTGTTGTTTGAAACTTTGTTTCTTATCAATATTAAACAAATGGTTTATTGTGTTGATTATTTTCTTTTTATGTCTTGAATAAGCATTGAATAAATAAAACAAGTTTATTTTAAATAAATTATTCTTAATTTGAAATTTTAAATATACAAATTTTTGATTTGCAAATAGAGAAACACTACTCATAACATTACAAACATGATTACAAACAAACAAACATTTACATCAAAAAAAAATAACATTACAAACATGATTACAATAGTTTTCAAGTATTTCAAAGTTCTAATATATAGGGATTGTTTTGTACTCCCTCTGTATTTTTTTAAGAGATACACTTGTCTTTTCCGGCCGTATTTATTTAAGAGATACACTTGCTATTTTTGGTAACTTATCAACCCCACCATCTAATTAAATAATCTATTTACACCCACCCCCACCACCATCCCCTAAAATGACATGGTCCCCACTTATTTTACTTATTAAAATATCTACCCAACCCCACTNTCTATTTACACCCACCCCCACTACCATCCCCTAAAATGACATGGTCCCCACTTATTTTACTTATTAAAATATCTACCCAACCCCACTTGTTTTATTACTTTATTTCATTCAATTCTTTTTCTTAATACCCGTGCCCGACCAAGTGTATCTCTTAAAAAAATACGGAGAGAGTACAAAAGAGGGAAAGGAAATGCCATCAAGAAAGGGAAAGAAGGGGAAATGAATGTAAAAGTGTTTGATTTCAAAGGTTGTTTGTTTCATAATAACCCCACCACAATCCGTCACTTAGGAGTCACGACTTTGCACCTCCCCCACCCCCCTTCACCGGCACGGCGCGCGACGCCTCCCTTCCCCCTTCTCCAGCCCTCCGGAGTCTCCCTCCCCCCTTTTTCGGCGCCTCCTCTTCCCCTCAACACCAGGTGATATGTTTCTCTCTCCTCTCCTCATCTCCTCTCCTCTCCTCTCCTCTCTTTTAGATCTGGTGGTTGGGGTTGTTCACGGGTGGTTTCGAGGTCGTTGGTTTGTTTTTTAAGTAGGTGTGGTGATTTTGGTGGGTGGGTGGGTTGTTTACATGGTGGATTTTGGGTGGGTTTTGTGGTGGTTGACCCCGATGAACGATGACAACACCGACGAATGATGACAATTACCGACGAACGATGACAACACCGACGAATGATGACAATTACCGACGAACGATGACAACACCGACGAAAATGGCGACTCCGACGAGGATGACGGCTCCGACGATCTAATGAGGGTGTCATGTGGTTGTGGGATGGTGTTGGCATGGAGGTGTGTTAGTGGTCATGGTGGATGTGTTGTTGACTTAGGGAAAGGGAATGGAAATATCATAGGGGGTGGGGTGAAATGGTGAATCAGAGTAGAGCCATTTGGGGGTAAAGGTAATGATTAAAATGACATAACAAACAACAAGGGAACTTGCCAAATTCATTCCCATCCCTTTCCTAAATACCTCCAACCAAACAGCCCCATAATGCAATACAATACACGAGTCTAGTGTAACAAATATATTGAACATTCAAACATCAAGTAAGAAGAAAATTGAGTTTAGATGACGGAGGCTAATGTAGAACCAAAATTCTGAATTTAAATTGTAAAAAACATTAAAAATTCTATACTCAATTAGAATTAGAAATTAAAATAAATAAATTAGTTTACATGGATACAAAGTTACGGATAGAAAAAAGAAAATAAAGGTCAAATGAGGAGACTAATGTGTGAATAATGTTTTTAGAGGGAAACTAGTATTTGGGCCGGGGCGATGCCCCGGGTTGATACACGTATAAAAATTTTAAATAAATTTCAATACTCTGTATTATTAAATTGTCATTTATTATATTTTGTTATGAAAAAATGACATATAATTTGATTTGGAGTAGTGGTTAATTGTTTGTTTACAATTAGAGGTCACGGGTTCAAGACTTGTACCACACATATTTATCATTTTTAAATAATTGTGTATGACATGGAACATTGAAATGAGATTAGTGCGAGTGCCACGTGGCACATAGGCTTGTTTATCCACGCCTTTTAATATATTAGTATAGATATTTGAGGTTGGTAAGGGTTGTAATTTTAGGCAATGTTAGGACAAAATAGGAAATTGATATTCACTCTCTCAAACCTCTAATTACAAAAAAGTCCTATAGTGAGCTTTTTCAGAATTACTCCAAAACTCTCTTCCAATCATCTCCTAACCAAACACTTCTAATTAGCATTTTTTAAAGGTTAATCCTTTAATTCAATTCAAAAAGCTCTTTTTCCTCAAACATTTAATTCAATATAAAAATTGTTGTTTTTAATTTCTTTAAAAAAAAATTAAAAAAAATCAGCCAGCAGTTTAATTTTGGGCCCCGAATTTGTGTATGTCCACCTAGATCTCCCAAGAGCAGGCCCCGTCATATAAAACCCAATTGTTTTTTTTCTTTTTTTCTTTTATCTTTCTTATCAGCCGTATAAAGACTCACACCAAAGCTGAAATCCTGAAATCCTAAAACCCTAGCCGGCGCATTCGAGGAGAGAGAAAAGCGAAGCAACTGCAGCAGAAGAACAACAGCTATGGGTAATCTCCAAATCCCTCTTCTTCTCTTTAAAGAACTTTCAATATCCACTTTTTCATTCGAAAAGTTCGTCACTTTTGAGTTTCAATGGTGTTTATGTTTATGATTTGGTTATGGTGATCATTGATTTTCAGGTAAGGTTCACGGATCATTGGCGCGTGCCGGTAAGGTGAGAGGGCAAACCCCCAAGGTTGCCAGTCAAGACAAGAAGAAGAAGCCCCGTGGACGCGCTCACAAGCGTTTGCAATACAATCGCCGTTTTGTTACTGCTGGTACGTTTTTCTCTCTCTTCTAATTTTTGAAGTTGTTTCTGGATTTCACTTTGATTAATGTTTAAAGCATATAGATTAATTTGTTTGTGGAATCACCAAATAATAGTGATTATAGTTAATGCGATTGTTTGCTTTAAATTGAAGGACATTAACGATAAACCGCTATCAGAACATCAGATGATTTTTCTCCTTTTATCTGATTTCATCCCTTTCCGTTTCTTGTACTTGGTGCGATTTTTGTGAGTGCATTAAAATATACTAGTAGTAATTTAGTAAGATACTAGTTTGATTTTAGGTAGAAAAAACCATCAAATTATTGATTTGATACCGAGCTTTGTTATCACGCTGTTAATTAAGCACATTTTCCCCTTAAATTTCTCTATGTTGCTTGATGTAGAATATGAGTGAGTTGTTTATGTTGTCTTTTAGTTTTAGATTTATTACCGTTTATGCTAAAATTAATCTTTTTCCTTGTTGGACTTTTAAGTGCCATGAAATAATGATATAGCATATAAGTAGCTGTTAATTCACTGTTGGCGAATGCAGAAAACTTACCGAAGTTCATTGTTTGAGCTGAATTTGTGGGATGGGGGTTGTGTTTGTTGTTTGTGTTTGTGAATTACTGCGAATTATTGCTACATTGGCTTTCTGTTTGGTTGCCATGTTCTTATTTTAAAAATCTAGCATGTTAGGTATCAAATGGGGTATAACTGAGTTCATTAATCCTTGTTGATCTTGAATGGTTTTGGTTAAACCTTTTAAAATGTCGCTGAAGTTTATGTTATTGAAGTTCAATTGGTAGTTTGGTATGGTTTTTGGTATAGTTGTGAGCCTAACTGAAGTTTATGCTATAAACTTATAGTAGCATTGTAATTTGTAGTGTTATACTGTAACTTTACACCAATATAAGTTTTTGGTATAAACTAGCAATGTAAGATGAGTATTATACTGTGTGCTAGTCCTTTTTGTCCCTTTGTCCTACTCAGTTAGGCTTTGATATACTTCCTCCATTCTTTTTACTTGCACCATTTGATGTTTCATGCTTTGCTTACGTGCTTGATCATCTTGTTCTACTTTTCAATATAGATATGAAAGTTATTTATAGCCAAAATAATATTTTTGCGACAAGGTAATTATGTGCTTGATTATTTTGTTCTGGTTTTCATTATGTTAAATTTGATTTCAGTTGTTGGATTCGGCAAGAAGAGGGGACCCAATTCCTCAGAGAAGTAAAGAGATTGAATAGCAAAATGTGAAGTCATGCACGCAGCAAGAATGTCATATTGCTTTAGGATATCTTAGTATTGCTCTATTACCTCTTGCCTCCGGATGTTAATGGCTTCAGAATCGTATTTTATTTTATTTTGAGCTAGAGAGCTAAACTATGTAGTTGGAGCCTTGTTTTTCCGAGCTAGTTAAAAATTGTCACCTTGTCGCATATTTGCACTATTCCATTTGAAGTTTTGTTGGTCTTGAAGCGAATAGGTGATCAACGTGTACCTATTGGCCATGAATCTAGGTTTCTTTTACAAGGAAATTTTGTTGCATATTTGTGATTTATTGTTCTTATCACGGTTTGATCAACTTTCTGGTAATTTGTTAGATTATCTTGAAACATGTTCTTGCTGATGATATGCTATCAAGAATTGGTGCATACATATTCTTAATAGTTTGGATTTTCTTCTCAATTTCAATCCGCCAATCATTCATTTGAAAA

mRNA sequence

ATGGGTGAGGATGGAGTATCATCCACATTCACGACCGCGTCAACTTGTTCTTCCACCTTCAACTTCATGATGTTCACATCCGGCGCATTCGAGGAGAGAGAAAAGCGAAGCAACTGCAGCAGAAGAACAACAGCTATGGGTAAGGTTCACGGATCATTGGCGCGTGCCGGTAAGGTGAGAGGGCAAACCCCCAAGGTTGCCAGTCAAGACAAGAAGAAGAAGCCCCGTGGACGCGCTCACAAGCGTTTGCAATACAATCGCCGTTTTGTTACTGCTGTTGTTGGATTCGGCAAGAAGAGGGGACCCAATTCCTCAGAGAAGTAAAGAGATTGAATAGCAAAATGTGAAGTCATGCACGCAGCAAGAATGTCATATTGCTTTAGGATATCTTAGTATTGCTCTATTACCTCTTGCCTCCGGATGTTAATGGCTTCAGAATCGTATTTTATTTTATTTTGAGCTAGAGAGCTAAACTATGTAGTTGGAGCCTTGTTTTTCCGAGCTAGTTAAAAATTGTCACCTTGTCGCATATTTGCACTATTCCATTTGAAGTTTTGTTGGTCTTGAAGCGAATAGGTGATCAACGTGTACCTATTGGCCATGAATCTAGGTTTCTTTTACAAGGAAATTTTGTTGCATATTTGTGATTTATTGTTCTTATCACGGTTTGATCAACTTTCTGGTAATTTGTTAGATTATCTTGAAACATGTTCTTGCTGATGATATGCTATCAAGAATTGGTGCATACATATTCTTAATAGTTTGGATTTTCTTCTCAATTTCAATCCGCCAATCATTCATTTGAAAA

Coding sequence (CDS)

ATGGGTGAGGATGGAGTATCATCCACATTCACGACCGCGTCAACTTGTTCTTCCACCTTCAACTTCATGATGTTCACATCCGGCGCATTCGAGGAGAGAGAAAAGCGAAGCAACTGCAGCAGAAGAACAACAGCTATGGGTAAGGTTCACGGATCATTGGCGCGTGCCGGTAAGGTGAGAGGGCAAACCCCCAAGGTTGCCAGTCAAGACAAGAAGAAGAAGCCCCGTGGACGCGCTCACAAGCGTTTGCAATACAATCGCCGTTTTGTTACTGCTGTTGTTGGATTCGGCAAGAAGAGGGGACCCAATTCCTCAGAGAAGTAA

Protein sequence

MGEDGVSSTFTTASTCSSTFNFMMFTSGAFEEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSSEK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo01262.1	Spo01262.1	mRNA

Homology

[Close]

BLAST of Spo01262.1 vs. NCBI nr
Match: gi|674900075|emb|CDY32875.1| (BnaC09g33220D [Brassica napus])

HSP 1 Score: 125.2 bits (313), Expect = 7.000e-26
Identity = 67/78 (85.90%), Postives = 69/78 (88.46%), Query Frame = 1


		  
Query: 36  RSNCSRRT------TAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRF 95
           RS CSRR       +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRF
Sbjct: 15  RSYCSRRKRKQRSKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRF 74

Query: 96  VTAVVGFGKKRGPNSSEK 108
           VTAVVGFGKKRGPNSSEK
Sbjct: 75  VTAVVGFGKKRGPNSSEK 92

[Close]

BLAST of Spo01262.1 vs. NCBI nr
Match: gi|641836965|gb|KDO55923.1| (hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis])

HSP 1 Score: 124.0 bits (310), Expect = 1.600e-25
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1


		  
Query: 31  EEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFV 90
           +++++R     + +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFV
Sbjct: 21  QQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV 80

Query: 91  TAVVGFGKKRGPNSSEK 108
           TAVVGFGKKRGPNSSEK
Sbjct: 81  TAVVGFGKKRGPNSSEK 97

[Close]

BLAST of Spo01262.1 vs. NCBI nr
Match: gi|703063147|ref|XP_010086894.1| (40S ribosomal protein S30 [Morus notabilis])

HSP 1 Score: 124.0 bits (310), Expect = 1.600e-25
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1


		  
Query: 42  RTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRG 101
           R +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRG
Sbjct: 73  RKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 132

Query: 102 PNSSEK 108
           PNSSEK
Sbjct: 133 PNSSEK 138

[Close]

BLAST of Spo01262.1 vs. NCBI nr
Match: gi|567918728|ref|XP_006451370.1| (hypothetical protein CICLE_v10009868mg [Citrus clementina])

HSP 1 Score: 124.0 bits (310), Expect = 1.600e-25
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1


		  
Query: 31  EEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFV 90
           +++++R     + +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFV
Sbjct: 57  QQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV 116

Query: 91  TAVVGFGKKRGPNSSEK 108
           TAVVGFGKKRGPNSSEK
Sbjct: 117 TAVVGFGKKRGPNSSEK 133

[Close]

BLAST of Spo01262.1 vs. NCBI nr
Match: gi|567178433|ref|XP_006401298.1| (hypothetical protein EUTSA_v10015110mg [Eutrema salsugineum])

HSP 1 Score: 123.6 bits (309), Expect = 2.000e-25
Identity = 65/88 (73.86%), Postives = 69/88 (78.41%), Query Frame = 1


		  
Query: 20  FNFMMFTSGAFEEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRA 79
           F    FT        +R    R  +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRA
Sbjct: 12  FTITQFTLAFQHSCSRRKKKERSKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA 71

Query: 80  HKRLQYNRRFVTAVVGFGKKRGPNSSEK 108
           HKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 72  HKRMQHNRRFVTAVVGFGKKRGPNSSEK 99

[Close]

BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: A0A078H2N5_BRANA (BnaC09g33220D protein OS=Brassica napus GN=BnaC09g33220D PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.900e-26
Identity = 67/78 (85.90%), Postives = 69/78 (88.46%), Query Frame = 1


		  
Query: 36  RSNCSRRT------TAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRF 95
           RS CSRR       +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRF
Sbjct: 15  RSYCSRRKRKQRSKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRF 74

Query: 96  VTAVVGFGKKRGPNSSEK 108
           VTAVVGFGKKRGPNSSEK
Sbjct: 75  VTAVVGFGKKRGPNSSEK 92

[Close]

BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: A0A067ELF8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042287mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.100e-25
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1


		  
Query: 31  EEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFV 90
           +++++R     + +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFV
Sbjct: 21  QQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV 80

Query: 91  TAVVGFGKKRGPNSSEK 108
           TAVVGFGKKRGPNSSEK
Sbjct: 81  TAVVGFGKKRGPNSSEK 97

[Close]

BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: V4UK23_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009868mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.100e-25
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1


		  
Query: 31  EEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFV 90
           +++++R     + +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFV
Sbjct: 57  QQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV 116

Query: 91  TAVVGFGKKRGPNSSEK 108
           TAVVGFGKKRGPNSSEK
Sbjct: 117 TAVVGFGKKRGPNSSEK 133

[Close]

BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: W9QWZ6_9ROSA (40S ribosomal protein S30 OS=Morus notabilis GN=L484_005479 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.100e-25
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1


		  
Query: 42  RTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRG 101
           R +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRG
Sbjct: 73  RKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 132

Query: 102 PNSSEK 108
           PNSSEK
Sbjct: 133 PNSSEK 138

[Close]

BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: V4NAB3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015110mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.400e-25
Identity = 65/88 (73.86%), Postives = 69/88 (78.41%), Query Frame = 1


		  
Query: 20  FNFMMFTSGAFEEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRA 79
           F    FT        +R    R  +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRA
Sbjct: 12  FTITQFTLAFQHSCSRRKKKERSKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA 71

Query: 80  HKRLQYNRRFVTAVVGFGKKRGPNSSEK 108
           HKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 72  HKRMQHNRRFVTAVVGFGKKRGPNSSEK 99

[Close]

BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_ARATH (40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=3 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 1.800e-26
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1


		  
Query: 46  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 105
           MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 106 EK 108
           EK
Sbjct: 61  EK 62

[Close]

BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_RAT (40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1


		  
Query: 48  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 106
           KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_MUSSI (40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1


		  
Query: 48  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 106
           KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_MOUSE (40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1


		  
Query: 48  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 106
           KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_HUMAN (40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1


		  
Query: 48  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 106
           KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Spo01262.1 vs. TAIR (Arabidopsis)
Match: AT2G19750.1 (Ribosomal protein S30 family protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1


		  
Query: 46  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 105
           MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 106 EK 108
           EK
Sbjct: 61  EK 62

[Close]

BLAST of Spo01262.1 vs. TAIR (Arabidopsis)
Match: AT4G29390.1 (Ribosomal protein S30 family protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1


		  
Query: 46  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 105
           MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 106 EK 108
           EK
Sbjct: 61  EK 62

[Close]

BLAST of Spo01262.1 vs. TAIR (Arabidopsis)
Match: AT5G56670.1 (Ribosomal protein S30 family protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1


		  
Query: 46  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 105
           MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 106 EK 108
           EK
Sbjct: 61  EK 62

The following BLAST results are available for this feature:

BLAST of Spo01262.1 vs. NCBI nr
BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
BLAST of Spo01262.1 vs. TAIR (Arabidopsis)

BLAST of Spo01262.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|674900075\|emb\|CDY32875.1\|	7.0e-26	85.9	BnaC09g33220D [Brassica napus]	[more]
gi\|641836965\|gb\|KDO55923.1\|	1.6e-25	80.5	hypothetical protein CISIN_1g0...	[more]
gi\|703063147\|ref\|XP_010086894.1\|	1.6e-25	93.9	40S ribosomal protein S30 [Mor...	[more]
gi\|567918728\|ref\|XP_006451370.1\|	1.6e-25	80.5	hypothetical protein CICLE_v10...	[more]
gi\|567178433\|ref\|XP_006401298.1\|	2.0e-25	73.8	hypothetical protein EUTSA_v10...	[more]

BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A078H2N5_BRANA	4.9e-26	85.9	BnaC09g33220D protein OS=Brass...	[more]
A0A067ELF8_CITSI	1.1e-25	80.5	Uncharacterized protein (Fragm...	[more]
V4UK23_9ROSI	1.1e-25	80.5	Uncharacterized protein OS=Cit...	[more]
W9QWZ6_9ROSA	1.1e-25	93.9	40S ribosomal protein S30 OS=M...	[more]
V4NAB3_EUTSA	1.4e-25	73.8	Uncharacterized protein OS=Eut...	[more]

BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RS30_ARATH	1.8e-26	96.7	40S ribosomal protein S30 OS=A...	[more]
RS30_RAT	3.5e-17	75.8	40S ribosomal protein S30 OS=R...	[more]
RS30_MUSSI	3.5e-17	75.8	40S ribosomal protein S30 OS=M...	[more]
RS30_MOUSE	3.5e-17	75.8	40S ribosomal protein S30 OS=M...	[more]
RS30_HUMAN	3.5e-17	75.8	40S ribosomal protein S30 OS=H...	[more]

BLAST of Spo01262.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT2G19750.1	1.0e-27	96.7	Ribosomal protein S30 family p...	[more]
AT4G29390.1	1.0e-27	96.7	Ribosomal protein S30 family p...	[more]
AT5G56670.1	1.0e-27	96.7	Ribosomal protein S30 family p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 48..104 score: 2.0
None	No IPR available	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 46..106 score: 1.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016787	hydrolase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo19833	0.80	Barchart \| Table
Spo16033	0.74	Barchart \| Table
Spo05607	0.74	Barchart \| Table
Spo20614	0.72	Barchart \| Table
Spo05275	0.71	Barchart \| Table
Spo10518	0.71	Barchart \| Table
Spo23922	0.71	Barchart \| Table
Spo12304	0.70	Barchart \| Table
Spo22307	0.70	Barchart \| Table
Spo23193	0.69	Barchart \| Table
Spo20935	0.69	Barchart \| Table
Spo02011	0.69	Barchart \| Table
Spo00780	0.69	Barchart \| Table
Spo20328	0.68	Barchart \| Table
Spo20161	0.68	Barchart \| Table
Spo00170	0.67	Barchart \| Table
Spo07599	0.67	Barchart \| Table
Spo15651	0.67	Barchart \| Table
Spo17109	0.67	Barchart \| Table
Spo17219	0.67	Barchart \| Table
Spo17929	0.67	Barchart \| Table
Spo19345	0.66	Barchart \| Table
Spo17271	0.66	Barchart \| Table
Spo17017	0.66	Barchart \| Table
Spo15925	0.66	Barchart \| Table
Spo26636	0.66	Barchart \| Table
Spo02534	0.65	Barchart \| Table