Spo16989 (gene)

Overview
NameSpo16989
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSWIb domain-containing protein
Locationchr4 : 78769611 .. 78775571 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTGAGTGACTCAGCCGCGAAGATCCGCGTAACTGGATTGGTTAACATGTGTTAGTTGCTGATTAAATATGGTCCCTTCTTCTTATCTATTAAAAAAACAAAAAAAAAATTGTGTGCCACCATTTGATACTCTTGAATATAGGTGAAGGAAATTCACATTTTAAGAAGAGATTGTTAATCTTTTGAAAGTAATAAACCAATGCATTTAACAGGTAAATCACACCAAAATTTGTAGGTGTTGTGAGGATGTGTGTGTGTGTGTGTGTGTTAAGATTAAGAGAACCTCTGCACCGTGCGACCATTTGGTGCTCCTGAATGTACATGTAGGGAAATCACTTTAATAAGAAGGGAGTGTTAAGCTCTTGAAAATCGACCCATATTAAACCGTCACATCATATAAGTCAATCCAATTTAACTTAATTTGCTGGTTAGACTCAATAATAAGGGGGGACAAATTAGAGAATCTCCATCCTAAAAAGTTCTTATCAGGCTTTAGCATAATTAACATTTGACTACATATCATAAATTCACTATTTGCCTAATCTTGATTTAATAAAATATAATCCATTCGTTGTGTTTCCACTATGAAGTTAGATAAAAGATTCAATGAAATTGGAGTGTGGCTACTGGCTACTTGCCTACTTGGTAACCCAAAATATCCCATGGTAAAAGGCGTAATCTATACTTCGAAGACACTCCATCAATCGTACATACTTGTAATTTATTTAAGTGAAAAATCAAATAGTTGATAGAAGTGTGCCTGTTTATTAGGCATAAATTACTAAATGCACATAATTATGTGCTTAGAACATACACTAATCCTAAACGCAAATTTTTGGCTATACCCGGGTACAACTAAAGCTGGTTGTACCCCCATCTAAAACGATGTCGTTTTGTGTTGTTTAAAATGAACATTAATATACTGGTACAAAAATGAACATTTACTATTTCAGAAATGAACATTTATTTATTTATTTGGAATGAACATTTACTATTTTGGAAATGAACATTTATTTATTTATTTGGAAATAAACTGCAAAAATGAACATTTACTATTTCGGAAATGAACATTTATTTATTTATTTGGAATGAACATTTACTATTTTGGAAATGAACATTTATTTATTTATTTGGAAATAAACAATATAGGCGCTTGTAAAAACATAAAAGACCAATGAAGTGAACAATTTCATTATGAATTTTAAAGCCAACATGAAAGAACAAACAATACAACAAGAAAGAACAAACAATAAAGCAGATAATTATTATGAACAAACAAATAAACAAGAAATAAAAAATAATTCAACAAAAAAGAACAAACAATATAAAAAAGAACATAAAATTCCAGAAAAAAGAACAAACAATACAACAATTATGAACAATTTTATGATGACTTTTAAAGCCAACATGAAAGAACAAACAATACAACAATAAGTTTGATGAATGGATTTAAAAACCAACAAGAAAGAACAAACAGTACAACAAGAAAGAACAACCAATACAAAAAGAAAGAATAAAAGATTAATGAAGAGTTTAATCATGAACATTAACCATATGATTATTATAAACAAACAAATAAACAAGAAAGAACAAACAATATAAAAAAGAACATAAAATTCCAGAAGAAAGAACAAAAAATACAACAATTATGAAAATTGGATGATGAATTTAAAAAACAATATGAAAGAACAAACAGTACAACAAGAATGAACAAACAGTACAACAAGAAAGAACAAACAATACAATAAGAATGAACAAACAGTACAATAAAAAAGAACAAACAGTCGACAAGAATGAACAAACAATATGAGCGCGTCGTTTTTGGGGGGTACAGCCAGAGCTGGCTGTACCCGGGTACAACAGTTAGCGATTGAATCCTAAAGTACTAATACGGAGTAGTTTATTGATGTGGCGGTGCCAAGTTAAGTTCAACGCAATTGATTTATTCAATTTCAACTTCTAAGGTGCAGTTGCCATTCATAAATTATAAATTATAAGGTATACCTCGTTGTATGTAGCTTTACATATAATTGCATTTGTACTATTTAAAAGCACATTTTTACGGTTTAAAAACACAATTTTACAGCTTAAAAGCACATACTCCGTACATTTTTTCCTGAAAATTTATTTTTTTATAATTTAAGTGATTGAGTTGTACTTAACAAGATGTTCTTTTAAAGCGGATGTGTTTTTATCTATAAATACATGTTTTTAAACAATAAAAATCTGTCTTTTGAAAGATTAAAAATACAAAATGACTCTGTTACATGTAGAGCCACATTCATACCAAATCTGTCTTTTGAAAGATTAAAAATACAAAATAACTCTGTTACATGTAGAGCCACATTCATACCATCGGGTGTACCTTCTAACGAATGGTATGATTCGGATCATAGACATTTTAGTAGGTGATTCGGTGAAGCTATATGTTAAAAAACCTTTGCCTATTCAAATTAAGATCATTCAAAATGGGCTTTTTAGCCCACATTTCAATTTTATAGCCACTAGGCCCACTATCCACCAAAAACACAAAACACATCACTGTACGGAGTATTATTAAACTGTGGTAACTGGTAAGTACGGAGTATTGAACTGAGAAAAACTCTAACAATTAAACCCTCACTTTACTCTCCTCACTCCTCAGGCCACAACTCGCCGCTTTCTTCGTCTGCTTACTCCGTATTCAAACAAGGTTCGGCTACCCATTTCTCATTTTCTCTCTCCTCCAAATCATCTACCACTTTCAGTTGTTTACCATTTTTGTCTGTCAAAACTTTCGATAAATTTTCAGCTTACTAGAACTTCATCAATGTCGACTTTGAGAGCAATCGGTGGGAAATGCAGAGCTCTTTTGGCGGCAGCGAAGACCTCCACTATCGACTCCTCCGCCACCAAGACTGCTAAACGATCGAAGAAGCCTGCTGCTTCTGATAGCGGTGCTCCTAAGGGTATTTTGAAGCCCGTTCCTGTCTCTCCTACTCTCAGAGACTTCATCGGCGCTCCCGAAGCTCCTAGAACTGAAGTTGTCAAGAAGGTTTGGGCGTACATCAAGCTTCATGATCTCCAGGTATGCTGATTAATTCATTGATTAAGCTTGTTTTAGTGGTTTAGTGTTAGGGTTTAGATTCGATGTTCTGAAAATTAGGGTTTTTAATGGTTAAATTAGTTTTGTCTTTTCCTTTGAGGGTTAATACGTTGATTAGAATTATTATTTGGGTTTAACGTTTTGTGTTTAGTGTTGCATGTCTACCTAAATACTTAATAATGGACGCACCTTGTTTTTCTGGTTGTGAAGTTTGATGATTAGTGAAAGGAATGTATCATTAGGGTTTTAGATGTTGATTTGAGTTATTTTGCTGCAGTATTTGTTTATTGAGGAGAATGTGAGGGTTTACAGTTTAGTTTAGTGGTGGAAAGTTTCTTTTAGCTTTTACACAGAATGTGTTATTATAGCTTTTATTTTTTTTATTAAGGAGAATGCGAGGGTTTAGAGTTTGGTTTAGTGGTGGAAAGTTTTTACACATTATGTATCCAAACGGGTGTTTTAAGGTTATGATCTTGATGGATTCAGATTAAGGAGTCACTAGTTGTTGGATCGGTATCGAAAACTGACTAGTAATTTCACAATGTAGTTTAAAATTGACTCGTATTAAGGAGTAGTGTTTTGATGTAAAAAGTGACTTATATCATGAAACTAGAGTAGTAAAATTGGACATATAATGTGAACGGCATGATGCCATGAGCATTTTTGTGTATTTATGTTTCTTTGGAGTGGTATGATTCTTCAGTAGCTGAACACTGATATGGAATCTGGAAGATGAATAAGGAGTATGATTGCTCACTTCTGTTATGTTCTGTAAAATATTGATGGAAAATTTTAACAGTCGATGGGGTGGAGAGCTGTGTCTCGCTTTGGTAAATTTTCAACCAAAAAACTAACCTATGTTGTAGGCATTAGAAATAACCTTTATGCATTTCACTGAATTGCTCTTGAATGTATGTCCTGGTAACAATGAGGTTGAGGATAATACAGGGATTGTCACTCGGTGTGGATGATGTTTATGATGCCATTAAAAATGTACCGGAATCATACAGTTTAGAGTTTGTTTCAAGTAGTGTTTCATGAAGGTGTATGTTGTGTGTTTGACATGAATTAATTAGCTAAATTAACTAGTGATGGAGGCTATGTTACTTCGACACCGTGGTTGACGGAGGGTGTCGGGTGTCGGATCCTCCGATCCTTCGGCACAATATTGACACCCAAATATATAGTGGCCTTGTATGAAATTTGTAACATTTAGAGCGTCAGAGGAGTGTCGGTTCTTCCGATTCCTTGTCGGACACAACACCCAAATAAGTCTAAGCAACATTGGATGGAGGACTTGACGACTTGTCATTGTTTTGTAATATCCAGGAACCTGAAGCAAATATGACTTTTATGTCTAATTTTTTTTTTTGTCGTCTGTTATTACTGCAAACTAACTATTCAAGATGTATGGTTGAATTATAATATTGCTGAACAAAATAGCTTCTGATTGTATGGAACATTATCTTGCATGTAATACTGTGCTTTGAACATGTAATAGATTTGGAACTTCTTCTAGAATCCTCCGTTTTCTATTTGTCAGTGCGAACTACTAATGGATCATATCATCTATCTACAGCCAGAGTCTAAAGAGGTGTTTGTTACTGAACATACATACAAGTATCTAAATTCAAACAGGTTGTAGAGGCTTAATTTTGTTACTTAACCTTGAGGCATATTCCGTGGATATCTTTTGGAGCCCTTTTAACTTGATTTTCCTTGACCCTCCTTTAGCCCCCCCCTGGATTTTTCATCCTCTGCACTGGCCTCTGCTTCCTATTTGAATGAGGTATATGCTAATAGCGACTTTTATAGTTATATGAAGGATTTGAAGCACTCTGTTGTAAACAATGCTTTACAGTTCCTGTTTGAAAATGAAGGTGTCTTTCAATCATGTAAAAATAAGCTTCAGAATCAACCATACCCAGAGGCTTAGTAACTAATGAAGCCTGTTTTAAAAGCTAACATTTCGTTTTGACTTCCTGGGCTCTGTTTTCTTTATCACCATTTGCTTTTGCATCTGCTCTATTCTGCAGATTAATGAAAGCACTTGAAATGCATAAAGTGTTGCAGCTATTGATTGTAGGTAGTGAATGTCTGTCCACGAACATGGTTGTTTGTTTTCTTCATTTTAGTGTGGAGCTAGCTTAAAGTTACATTACCAGTGTGTATCAAGGAGTGGTTACTGTCACAGCGCAGCCCTTGTTGTGCATGATAAATAGGTTTTAGATAGGTTTAGAATTAAGATCTGAATATTTGATACTCTGTACTTGATCTTTTCATGGCCTTGCTTTACACAAGCTTATGGCGTTGAGTTGTTTCATGCAGAATCCTGAGAATAAGAGGGAGATCATATGCGACGAGAAGCTGAAGACATTGTTTAGCGGAAAGGATAGAGTCGGTTTCCTGGAGATTGCAAAGTTGCTGTCGGTGCACTTTGTAAAGACTGCCTGATCACTTGACCATGTTTGGATAAACACCAGCTAGCTAAATGGTGGAATATGCTAGGTTTTTTTTTAATTTTTTTTTTTAAAATTTTTAGTTTTAGGGGGTTGATATTTTGGAACTCGAAGATTATGTATGTTTTTTGTGCATTGGTTTAGATGTCGAGTTCAATGTAATGAATTGACTCTTTTTTACTATGCAATTAAATCCTAATGGCTTATCTTCTGGATGATTTGTGTAGTGAATTGCTTGCAACATATTTCAATAACTTGGTTATGTTTTGGTGTATATTGTATGTCATCTTTCCTAAAGCTTGATATCATTGAACCATTGACGGAATGGTCCAGGTTATAGTATTTATACCATTACTTCTATTCTATACCAAAAGGTTATATGACTATAAGTCATAACTGCACTTAATTGTTT

mRNA sequence

ATGCTTGTGAGTGACTCAGCCGCGAAGATCCGCGCCACAACTCGCCGCTTTCTTCGTCTGCTTACTCCGTATTCAAACAAGGTTCGGCTACCCATTTCTCATTTTCTCTCTCCTCCAAATCATCTACCACTTTCAGTTGTTTACCATTTTTGTCTGTCAAAACTTTCGATAAATTTTCAGCTTACTAGAACTTCATCAATGTCGACTTTGAGAGCAATCGGTGGGAAATGCAGAGCTCTTTTGGCGGCAGCGAAGACCTCCACTATCGACTCCTCCGCCACCAAGACTGCTAAACGATCGAAGAAGCCTGCTGCTTCTGATAGCGGTGCTCCTAAGGGTATTTTGAAGCCCGTTCCTGTCTCTCCTACTCTCAGAGACTTCATCGGCGCTCCCGAAGCTCCTAGAACTGAAGTTGTCAAGAAGGTTTGGGCGTACATCAAGCTTCATGATCTCCAGAATCCTGAGAATAAGAGGGAGATCATATGCGACGAGAAGCTGAAGACATTGTTTAGCGGAAAGGATAGAGTCGGTTTCCTGGAGATTGCAAAGTTGCTGTCGGTGCACTTTGTAAAGACTGCCTGATCACTTGACCATGTTTGGATAAACACCAGCTAGCTAAATGGTGGAATATGCTAGGTTTTTTTTTAATTTTTTTTTTTAAAATTTTTAGTTTTAGGGGGTTGATATTTTGGAACTCGAAGATTATGTATGTTTTTTGTGCATTGGTTTAGATGTCGAGTTCAATGTAATGAATTGACTCTTTTTTACTATGCAATTAAATCCTAATGGCTTATCTTCTGGATGATTTGTGTAGTGAATTGCTTGCAACATATTTCAATAACTTGGTTATGTTTTGGTGTATATTGTATGTCATCTTTCCTAAAGCTTGATATCATTGAACCATTGACGGAATGGTCCAGGTTATAGTATTTATACCATTACTTCTATTCTATACCAAAAGGTTATATGACTATAAGTCATAACTGCACTTAATTGTTT

Coding sequence (CDS)

ATGCTTGTGAGTGACTCAGCCGCGAAGATCCGCGCCACAACTCGCCGCTTTCTTCGTCTGCTTACTCCGTATTCAAACAAGGTTCGGCTACCCATTTCTCATTTTCTCTCTCCTCCAAATCATCTACCACTTTCAGTTGTTTACCATTTTTGTCTGTCAAAACTTTCGATAAATTTTCAGCTTACTAGAACTTCATCAATGTCGACTTTGAGAGCAATCGGTGGGAAATGCAGAGCTCTTTTGGCGGCAGCGAAGACCTCCACTATCGACTCCTCCGCCACCAAGACTGCTAAACGATCGAAGAAGCCTGCTGCTTCTGATAGCGGTGCTCCTAAGGGTATTTTGAAGCCCGTTCCTGTCTCTCCTACTCTCAGAGACTTCATCGGCGCTCCCGAAGCTCCTAGAACTGAAGTTGTCAAGAAGGTTTGGGCGTACATCAAGCTTCATGATCTCCAGAATCCTGAGAATAAGAGGGAGATCATATGCGACGAGAAGCTGAAGACATTGTTTAGCGGAAAGGATAGAGTCGGTTTCCTGGAGATTGCAAAGTTGCTGTCGGTGCACTTTGTAAAGACTGCCTGA

Protein sequence

MLVSDSAAKIRATTRRFLRLLTPYSNKVRLPISHFLSPPNHLPLSVVYHFCLSKLSINFQLTRTSSMSTLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVHFVKTA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16989.1Spo16989.1mRNA


Homology
[Close]
BLAST of Spo16989.1 vs. NCBI nr
Match: gi|902233620|gb|KNA23121.1| (hypothetical protein SOVF_027610 [Spinacia oleracea])

HSP 1 Score: 241.9 bits (616), Expect = 9.300e-61
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 1 

		  

Query: 67  MSTLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRD 126
           MSTLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRD
Sbjct: 1   MSTLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRD 60

Query: 127 FIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLS 186
           FIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLK LFSGKDRVGFLEIAKLLS
Sbjct: 61  FIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKALFSGKDRVGFLEIAKLLS 120

Query: 187 VHFVKTA 194
           VHFVKTA
Sbjct: 121 VHFVKTA 127
[Close]
BLAST of Spo16989.1 vs. NCBI nr
Match: gi|731329456|ref|XP_010675600.1| (PREDICTED: upstream activation factor subunit spp27 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 167.2 bits (422), Expect = 2.900e-38
Identity = 88/129 (68.22%), Postives = 103/129 (79.84%), Query Frame = 1 

		  

Query: 67  MSTLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAP---KGILKPVPVSPT 126
           M+T RAIGGKCRAL+AAA +S   ++ + TAK+ K+P++S   A    KG  KP+PVSP 
Sbjct: 1   MATFRAIGGKCRALMAAASSSATTAAKSATAKKPKRPSSSSPSATPPLKGFSKPIPVSPI 60

Query: 127 LRDFIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAK 186
           L DFIG+PEA RT  VKKVW +IKL++LQNP NKREIICDEKLK LFSGKDRVGFLEIAK
Sbjct: 61  LSDFIGSPEASRTAAVKKVWEHIKLNNLQNPANKREIICDEKLKALFSGKDRVGFLEIAK 120

Query: 187 LLSVHFVKT 193
           LLS HFVKT
Sbjct: 121 LLSQHFVKT 129
[Close]
BLAST of Spo16989.1 vs. NCBI nr
Match: gi|697153586|ref|XP_009631043.1| (PREDICTED: uncharacterized protein LOC104120876, partial [Nicotiana tomentosiformis])

HSP 1 Score: 137.9 bits (346), Expect = 1.900e-29
Identity = 80/144 (55.56%), Postives = 100/144 (69.44%), Query Frame = 1 

		  

Query: 52  LSKLSINF-QLTRTSSMSTL-RAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSG 111
           L  LS+ F Q  +  SM+T  R  G  CR L+AAAK+ST   +AT     +    A+  G
Sbjct: 34  LLPLSLGFLQNPKRKSMATSSRVFGSYCRTLMAAAKSST---AATTPPAPAAAATATGKG 93

Query: 112 APKGILKPVPVSPTLRDFIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTL 171
             KGILKP+PVSP LR F+G+ E  RT+ VKKVW YIK ++LQNP NK+EI CD+KLKT+
Sbjct: 94  RHKGILKPLPVSPALRKFVGSSEISRTDAVKKVWDYIKTNNLQNPANKKEINCDDKLKTI 153

Query: 172 FSGKDRVGFLEIAKLLSVHFVKTA 194
           F+GKD+VGFLEIAKLLS HF K +
Sbjct: 154 FAGKDKVGFLEIAKLLSSHFQKAS 174
[Close]
BLAST of Spo16989.1 vs. NCBI nr
Match: gi|225436221|ref|XP_002270166.1| (PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera])

HSP 1 Score: 136.7 bits (343), Expect = 4.200e-29
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 1 

		  

Query: 78  RALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAPRTE 137
           R LLAAA++S+  ++ATK      + AA       GI KPVPVSP LR F+G PEA R E
Sbjct: 13  RVLLAAARSSSSPAAATKKTPAPPRTAAKGPPRSGGITKPVPVSPALRKFLGVPEASRAE 72

Query: 138 VVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVHFVKT 193
            VKK+W +IKL++LQNP NKREI+CDEKLK++F GKD+VGFLEI KLLS HF+KT
Sbjct: 73  AVKKIWEHIKLNNLQNPTNKREILCDEKLKSVFEGKDKVGFLEIGKLLSHHFIKT 127
[Close]
BLAST of Spo16989.1 vs. NCBI nr
Match: gi|970044411|ref|XP_015083620.1| (PREDICTED: protein TRI1-like [Solanum pennellii])

HSP 1 Score: 136.3 bits (342), Expect = 5.500e-29
Identity = 73/126 (57.94%), Postives = 87/126 (69.05%), Query Frame = 1 

		  

Query: 68  STLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDF 127
           S+ R  G  CRAL+AAAKTS    +AT+T   +        G P GILKP PVSP L  F
Sbjct: 3   SSTRIFGNCCRALMAAAKTS----AATETTATATATVTKARGRPTGILKPQPVSPALGSF 62

Query: 128 IGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSV 187
           +G  E+ R + VKKVW YIK H+LQNP NKREI CD+KLKT+F GKD+VGFLEIA+LL+ 
Sbjct: 63  LGTKESSRADAVKKVWEYIKTHNLQNPTNKREIHCDDKLKTIFDGKDKVGFLEIARLLTQ 122

Query: 188 HFVKTA 194
           HF K A
Sbjct: 123 HFHKAA 124
[Close]
BLAST of Spo16989.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUC9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_027610 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.500e-61
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 1 

		  

Query: 67  MSTLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRD 126
           MSTLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRD
Sbjct: 1   MSTLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRD 60

Query: 127 FIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLS 186
           FIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLK LFSGKDRVGFLEIAKLLS
Sbjct: 61  FIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKALFSGKDRVGFLEIAKLLS 120

Query: 187 VHFVKTA 194
           VHFVKTA
Sbjct: 121 VHFVKTA 127
[Close]
BLAST of Spo16989.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FAZ3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g087310 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.000e-38
Identity = 88/129 (68.22%), Postives = 103/129 (79.84%), Query Frame = 1 

		  

Query: 67  MSTLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAP---KGILKPVPVSPT 126
           M+T RAIGGKCRAL+AAA +S   ++ + TAK+ K+P++S   A    KG  KP+PVSP 
Sbjct: 1   MATFRAIGGKCRALMAAASSSATTAAKSATAKKPKRPSSSSPSATPPLKGFSKPIPVSPI 60

Query: 127 LRDFIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAK 186
           L DFIG+PEA RT  VKKVW +IKL++LQNP NKREIICDEKLK LFSGKDRVGFLEIAK
Sbjct: 61  LSDFIGSPEASRTAAVKKVWEHIKLNNLQNPANKREIICDEKLKALFSGKDRVGFLEIAK 120

Query: 187 LLSVHFVKT 193
           LLS HFVKT
Sbjct: 121 LLSQHFVKT 129
[Close]
BLAST of Spo16989.1 vs. UniProtKB/TrEMBL
Match: A5BKY5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00650 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.900e-29
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 1 

		  

Query: 78  RALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAPRTE 137
           R LLAAA++S+  ++ATK      + AA       GI KPVPVSP LR F+G PEA R E
Sbjct: 13  RVLLAAARSSSSPAAATKKTPAPPRTAAKGPPRSGGITKPVPVSPALRKFLGVPEASRAE 72

Query: 138 VVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVHFVKT 193
            VKK+W +IKL++LQNP NKREI+CDEKLK++F GKD+VGFLEI KLLS HF+KT
Sbjct: 73  AVKKIWEHIKLNNLQNPTNKREILCDEKLKSVFEGKDKVGFLEIGKLLSHHFIKT 127
[Close]
BLAST of Spo16989.1 vs. UniProtKB/TrEMBL
Match: A0A0V0H9B9_SOLCH (Uncharacterized protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.800e-29
Identity = 73/126 (57.94%), Postives = 87/126 (69.05%), Query Frame = 1 

		  

Query: 68  STLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDF 127
           S+ R  G  CRAL+AAAKTS    +AT+T   +        G P GILKP PVSP L  F
Sbjct: 3   SSTRIFGNCCRALMAAAKTS----AATETTATATATVTKARGRPTGILKPQPVSPALGSF 62

Query: 128 IGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSV 187
           +G  E+ R + VKKVW YIK H+LQNP NKREI CD+KLKT+F GKD+VGFLEIA+LL+ 
Sbjct: 63  LGTKESSRADAVKKVWEYIKTHNLQNPTNKREIHCDDKLKTIFDGKDKVGFLEIARLLTQ 122

Query: 188 HFVKTA 194
           HF K A
Sbjct: 123 HFHKAA 124
[Close]
BLAST of Spo16989.1 vs. UniProtKB/TrEMBL
Match: M0ZP94_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001965 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.800e-29
Identity = 73/126 (57.94%), Postives = 87/126 (69.05%), Query Frame = 1 

		  

Query: 68  STLRAIGGKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDF 127
           S+ R  G  CRAL+AAAKTS    +AT+T   +        G P GILKP PVSP L  F
Sbjct: 3   SSTRIFGNCCRALMAAAKTS----AATETTATATATVTKARGRPTGILKPQPVSPALGSF 62

Query: 128 IGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSV 187
           +G  E+ R + VKKVW YIK H+LQNP NKREI CD+KLKT+F GKD+VGFLEIA+LL+ 
Sbjct: 63  LGTKESSRADAVKKVWEYIKTHNLQNPTNKREIHCDDKLKTIFDGKDKVGFLEIARLLTQ 122

Query: 188 HFVKTA 194
           HF K A
Sbjct: 123 HFHKAA 124
[Close]
BLAST of Spo16989.1 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-13
Identity = 41/97 (42.27%), Postives = 65/97 (67.01%), Query Frame = 1 

		  

Query: 92  SATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAPRTEVVKKVWAYIKLHDL 151
           S +K+ ++ KK  + DS +    ++ V +S  L+ F+G+ E PRT+VVK +W YIK HDL
Sbjct: 100 SESKSKRKKKKNDSPDSNSIS--VRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDL 159

Query: 152 QNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVH 189
           QNP+++REI+CDEK++ +F  K  +    + KLL+ H
Sbjct: 160 QNPKDRREILCDEKMEPIFGKK--MTMFSMNKLLTKH 192
[Close]
BLAST of Spo16989.1 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.000e-11
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 

		  

Query: 98  KRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAPRTEVVKKVWAYIKLHDLQNPENK 157
           KR++ PA +       + KP+ +SP L +F+G  +  R + VKK+W YIK HDLQ+P +K
Sbjct: 107 KRNQDPANNP------LNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDK 166

Query: 158 REIICDEKLKTLF 171
           R I+CD+KLK++F
Sbjct: 167 RTILCDDKLKSVF 173
[Close]
BLAST of Spo16989.1 vs. ExPASy Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.700e-11
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1 

		  

Query: 90  DSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAPRTEVVKKVWAYIKLH 149
           DS    T    KK   S S       + V +S +L   +G  E  RTEVV+++WAYIK H
Sbjct: 99  DSETKGTHVEKKKGTVSKSPIST---RKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAH 158

Query: 150 DLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVHFVK 192
           +LQNP NK+EI+CDEKL+ L  GK      E+ K+L+ H  +
Sbjct: 159 NLQNPNNKKEILCDEKLE-LILGKS-TNMFEMHKILASHMTE 195
[Close]
BLAST of Spo16989.1 vs. ExPASy Swiss-Prot
Match: C3H19_ARATH (Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 2.900e-6
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1 

		  

Query: 134 PRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVHFVK 192
           P  EV   + AYIK ++L++P  K ++ICD +L+ LF GK  VG  E+  LL  HF+K
Sbjct: 828 PMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLF-GKSHVGHFEMLNLLDSHFLK 884
[Close]
BLAST of Spo16989.1 vs. TAIR (Arabidopsis)
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 5.800e-29
Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 1 

		  

Query: 93  ATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAPRTEVVKKVWAYIKLHDLQ 152
           A  +A  S +P A++   P+GI+KP PVSP ++D +  PE  RT+ +K++WAYIK HDLQ
Sbjct: 44  AVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQ 103

Query: 153 NPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVHFV 191
           +P+NKREI+CDEKLK +F G+DRVGFLEIAKL+  HF+
Sbjct: 104 DPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141
[Close]
BLAST of Spo16989.1 vs. TAIR (Arabidopsis)
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.800e-28
Identity = 59/113 (52.21%), Postives = 82/113 (72.57%), Query Frame = 1 

		  

Query: 78  RALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAPRTE 137
           RA+ +AA  S+  ++ TKT +            P+GI+KP PVS  ++D +G PE PRT+
Sbjct: 44  RAVTSAAAASSDPTTTTKTRE------------PRGIMKPRPVSQAMQDVVGVPEIPRTQ 103

Query: 138 VVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVHFV 191
            +K++WAYIK HDLQ+P+NKR+I+CDEKLK +F GK+RVGFLEIAKL+  HF+
Sbjct: 104 ALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144
[Close]
BLAST of Spo16989.1 vs. TAIR (Arabidopsis)
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 3.200e-27
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 1 

		  

Query: 75  GKCRALLAAAKTSTIDSSATKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAP 134
           G CR L+A A +ST      KT ++             GILK VPVS  L +FIG  E  
Sbjct: 6   GACRVLMAKAASST----GAKTGRQGT-----------GILKVVPVSKPLANFIGENEVS 65

Query: 135 RTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVHFVKTA 194
           RT  VKK+W YIKL++LQNP NKREI+CDE+LKT+FSGKD VGFLEI+KLLS HF K+A
Sbjct: 66  RTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109
[Close]
BLAST of Spo16989.1 vs. TAIR (Arabidopsis)
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 7.100e-27
Identity = 71/131 (54.20%), Postives = 84/131 (64.12%), Query Frame = 1 

		  

Query: 78  RALLAAAKTST---IDSSATKT------AKRSKKPAA-SDSGAPK-----GILKPVPVSP 137
           R+LLA A  +T   + + +TK       AK   KP A SDS A K     GI K  PVSP
Sbjct: 13  RSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKVTPVSP 72

Query: 138 TLRDFIGAPEAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKTLFSGKDRVGFLEIA 194
            L  F+G  E  RT+ +K +W YIK HDLQNP +KREI CDE LK +F GKD+VGFLEI+
Sbjct: 73  VLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEIS 132
[Close]
BLAST of Spo16989.1 vs. TAIR (Arabidopsis)
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.100e-22
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 1 

		  

Query: 94  TKTAKRSKKPAASDSGAPKGILKPVPVSPTLRDFIGAPEAPRTEVVKKVWAYIKLHDLQN 153
           T  +K +   A + +G  KGI K  PVS  L  F G  E  R   +KKVW Y+KLH+LQN
Sbjct: 13  TLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQN 72

Query: 154 PENKREIICDEKLKTLFSGKDRVGFLEIAKLLSVHFVKT 193
           P NK+EI CD+KLKT+F GKD+VG  EI KLLS HF K+
Sbjct: 73  PANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111
The following BLAST results are available for this feature:
BLAST of Spo16989.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902233620|gb|KNA23121.1|9.3e-6199.2hypothetical protein SOVF_0276... [more]
gi|731329456|ref|XP_010675600.1|2.9e-3868.2PREDICTED: upstream activation... [more]
gi|697153586|ref|XP_009631043.1|1.9e-2955.5PREDICTED: uncharacterized pro... [more]
gi|225436221|ref|XP_002270166.1|4.2e-2960.8PREDICTED: upstream activation... [more]
gi|970044411|ref|XP_015083620.1|5.5e-2957.9PREDICTED: protein TRI1-like [... [more]
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BLAST of Spo16989.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RUC9_SPIOL6.5e-6199.2Uncharacterized protein OS=Spi... [more]
A0A0J8FAZ3_BETVU2.0e-3868.2Uncharacterized protein OS=Bet... [more]
A5BKY5_VITVI2.9e-2960.8Putative uncharacterized prote... [more]
A0A0V0H9B9_SOLCH3.8e-2957.9Uncharacterized protein OS=Sol... [more]
M0ZP94_SOLTU3.8e-2957.9Uncharacterized protein OS=Sol... [more]
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BLAST of Spo16989.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TRI1_YEAST2.5e-1342.2Protein TRI1 OS=Saccharomyces ... [more]
UAF30_SCHPO3.0e-1145.2Upstream activation factor sub... [more]
UAF30_YEAST6.7e-1142.1Upstream activation factor sub... [more]
C3H19_ARATH2.9e-644.8Zinc finger CCCH domain-contai... [more]
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BLAST of Spo16989.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G14880.15.8e-2957.1SWIB/MDM2 domain superfamily p... [more]
AT4G34290.13.8e-2852.2SWIB/MDM2 domain superfamily p... [more]
AT2G35605.13.2e-2756.3SWIB/MDM2 domain superfamily p... [more]
AT3G03590.17.1e-2754.2SWIB/MDM2 domain superfamily p... [more]
AT1G31760.13.1e-2253.5SWIB/MDM2 domain superfamily p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainGENE3D1.10.245.10coord: 108..192
score: 3.9
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 116..189
score: 7.3
IPR003121SWIB/MDM2 domainunknownSSF47592SWIB/MDM2 domaincoord: 111..191
score: 3.05
IPR019835SWIB domainSMARTSM00151swib_2coord: 114..192
score: 2.8
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 92..192
score: 7.0
NoneNo IPR availablePANTHERPTHR13844:SF8EXPRESSED PROTEINcoord: 92..192
score: 7.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo210270.67Barchart | Table
Spo280980.67Barchart | Table
Spo300340.66Barchart | Table