Spo19516 (gene) | SpinachBase

Overview


Name	Spo19516
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Histone superfamily protein
Location	chr4 : 87219428 .. 87219838 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTACCAAGCAAACCGCCCGTAAATCCACCGGAGGAAAAGCTCCAAGGAAGCAGCTCGCCACCAAGGCCGCCCGTAAGTCCGCCCCAGCTACCGGGGGAGTGAAGAAGCCCCACCGTTTCCGCCCTGGAACCGTGGCACTCCGTGAGATCAGGAAGTATCAGAAGAGCACTGAGCTTCTCATCAGGAAGCTTCCATTCCAGAGGCTGGTTAGAGAAATCGCTCAGGATTTCAAGACCGATCTTCGCTTCCAGAGCTCTGCCGTCGCTGCTCTTCAGGAGGCTGCTGAGGCTTACTTAGTTGGTCTGTTTGAAGATACTAACCTCTGCGCTATTCATGCTAAGAGGGTTACTATTATGCCTAAGGATATTCAGCTCGCCAGGAGGATTCGTGGTGAAAGGGCTTAA

mRNA sequence

ATGGCTCGTACCAAGCAAACCGCCCGTAAATCCACCGGAGGAAAAGCTCCAAGGAAGCAGCTCGCCACCAAGGCCGCCCGTAAGTCCGCCCCAGCTACCGGGGGAGTGAAGAAGCCCCACCGTTTCCGCCCTGGAACCGTGGCACTCCGTGAGATCAGGAAGTATCAGAAGAGCACTGAGCTTCTCATCAGGAAGCTTCCATTCCAGAGGCTGGTTAGAGAAATCGCTCAGGATTTCAAGACCGATCTTCGCTTCCAGAGCTCTGCCGTCGCTGCTCTTCAGGAGGCTGCTGAGGCTTACTTAGTTGGTCTGTTTGAAGATACTAACCTCTGCGCTATTCATGCTAAGAGGGTTACTATTATGCCTAAGGATATTCAGCTCGCCAGGAGGATTCGTGGTGAAAGGGCTTAA

Coding sequence (CDS)

ATGGCTCGTACCAAGCAAACCGCCCGTAAATCCACCGGAGGAAAAGCTCCAAGGAAGCAGCTCGCCACCAAGGCCGCCCGTAAGTCCGCCCCAGCTACCGGGGGAGTGAAGAAGCCCCACCGTTTCCGCCCTGGAACCGTGGCACTCCGTGAGATCAGGAAGTATCAGAAGAGCACTGAGCTTCTCATCAGGAAGCTTCCATTCCAGAGGCTGGTTAGAGAAATCGCTCAGGATTTCAAGACCGATCTTCGCTTCCAGAGCTCTGCCGTCGCTGCTCTTCAGGAGGCTGCTGAGGCTTACTTAGTTGGTCTGTTTGAAGATACTAACCTCTGCGCTATTCATGCTAAGAGGGTTACTATTATGCCTAAGGATATTCAGCTCGCCAGGAGGATTCGTGGTGAAAGGGCTTAA

Protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19516.1	Spo19516.1	mRNA

Homology

[Close]

BLAST of Spo19516.1 vs. NCBI nr
Match: gi|992271660|gb|KXG31833.1| (hypothetical protein SORBI_003G065000, partial [Sorghum bicolor])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 87  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 146

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 147 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 206

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 207 MPKDIQLARRIRGERA 222

[Close]

BLAST of Spo19516.1 vs. NCBI nr
Match: gi|643697049|gb|KDP20192.1| (hypothetical protein JCGZ_07912 [Jatropha curcas])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 91  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 150

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 151 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 210

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 211 MPKDIQLARRIRGERA 226

[Close]

BLAST of Spo19516.1 vs. NCBI nr
Match: gi|414878180|tpg|DAA55311.1| (TPA: histone H3.2 [Zea mays])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 110 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 169

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 170 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 229

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 230 MPKDIQLARRIRGERA 245

[Close]

BLAST of Spo19516.1 vs. NCBI nr
Match: gi|944232983|gb|KQK97345.1| (hypothetical protein SETIT_012204mg, partial [Setaria italica])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 123 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 182

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 183 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 242

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 243 MPKDIQLARRIRGERA 258

[Close]

BLAST of Spo19516.1 vs. NCBI nr
Match: gi|922560415|ref|XP_013608483.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106315288 [Brassica oleracea var. oleracea])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. UniProtKB/TrEMBL
Match: Q71CZ4_OROCE (Histone H3 OS=Orobanche cernua var. cumana PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. UniProtKB/TrEMBL
Match: K3YE80_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_012541mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 52  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 111

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 112 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 171

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 172 MPKDIQLARRIRGERA 187

[Close]

BLAST of Spo19516.1 vs. UniProtKB/TrEMBL
Match: A0A096TZU4_MAIZE (Histone H3.2 OS=Zea mays GN=H3C4 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 110 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 169

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 170 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 229

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 230 MPKDIQLARRIRGERA 245

[Close]

BLAST of Spo19516.1 vs. UniProtKB/TrEMBL
Match: K3ZAN5_SETIT (Histone H3 OS=Setaria italica GN=SETIT_007481mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. UniProtKB/TrEMBL
Match: M5WKJ0_PRUPE (Histone H3 OS=Prunus persica GN=PRUPE_ppa013165mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. ExPASy Swiss-Prot
Match: H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. ExPASy Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. ExPASy Swiss-Prot
Match: H32_BRANA (Histone H3.2 OS=Brassica napus PE=2 SV=3)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. ExPASy Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. ExPASy Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. TAIR (Arabidopsis)
Match: AT1G09200.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. TAIR (Arabidopsis)
Match: AT3G27360.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. TAIR (Arabidopsis)
Match: AT5G10390.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. TAIR (Arabidopsis)
Match: AT5G10400.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo19516.1 vs. TAIR (Arabidopsis)
Match: AT5G65360.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Spo19516.1 vs. NCBI nr
BLAST of Spo19516.1 vs. UniProtKB/TrEMBL
BLAST of Spo19516.1 vs. ExPASy Swiss-Prot
BLAST of Spo19516.1 vs. TAIR (Arabidopsis)

BLAST of Spo19516.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|992271660\|gb\|KXG31833.1\|	2.2e-64	100.	hypothetical protein SORBI_003...	[more]
gi\|643697049\|gb\|KDP20192.1\|	2.2e-64	100.	hypothetical protein JCGZ_0791...	[more]
gi\|414878180\|tpg\|DAA55311.1\|	2.2e-64	100.	TPA: histone H3.2 [Zea mays]	[more]
gi\|944232983\|gb\|KQK97345.1\|	2.2e-64	100.	hypothetical protein SETIT_012...	[more]
gi\|922560415\|ref\|XP_013608483.1\|	2.2e-64	100.	PREDICTED: LOW QUALITY PROTEIN...	[more]

BLAST of Spo19516.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
Q71CZ4_OROCE	1.5e-64	100.	Histone H3 OS=Orobanche cernua...	[more]
K3YE80_SETIT	1.5e-64	100.	Uncharacterized protein OS=Set...	[more]
A0A096TZU4_MAIZE	1.5e-64	100.	Histone H3.2 OS=Zea mays GN=H3...	[more]
K3ZAN5_SETIT	1.5e-64	100.	Histone H3 OS=Setaria italica ...	[more]
M5WKJ0_PRUPE	1.5e-64	100.	Histone H3 OS=Prunus persica G...	[more]

BLAST of Spo19516.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
H32_ARATH	1.4e-66	100.	Histone H3.2 OS=Arabidopsis th...	[more]
H32_ASPOF	1.4e-66	100.	Histone H3.2 OS=Asparagus offi...	[more]
H32_BRANA	1.4e-66	100.	Histone H3.2 OS=Brassica napus...	[more]
H32_EUPES	1.4e-66	100.	Histone H3.2 OS=Euphorbia esul...	[more]
H32_PETCR	1.4e-66	100.	Histone H3.2 OS=Petroselinum c...	[more]

BLAST of Spo19516.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT1G09200.1	7.7e-68	100.	Histone superfamily protein	[more]
AT3G27360.1	7.7e-68	100.	Histone superfamily protein	[more]
AT5G10390.1	7.7e-68	100.	Histone superfamily protein	[more]
AT5G10400.1	7.7e-68	100.	Histone superfamily protein	[more]
AT5G65360.1	7.7e-68	100.	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 114..135 score: 1.3E-85coord: 98..114 score: 1.3E-85coord: 34..55 score: 1.3E-85coord: 80..98 score: 1.3E-85coord: 3..17 score: 1.3E-85coord: 17..31 score: 1.3E-85coord: 58..75 score: 1.3
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 1..136 score: 1.2E
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 34..136 score: 8.4
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 15..21 scor
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 67..75 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 1..132 score: 8.0
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 2..134 score: 5.5
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 2..133 score: 1.14

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo13367	0.73	Barchart \| Table
Spo25598	0.66	Barchart \| Table