Spo09448 (gene) | SpinachBase

Overview


Name	Spo09448
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Chloroplast outer envelope 24 kD protein (Omp24)
Location	chr4 : 90580249 .. 90583481 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGACTCTTATAAAAATAGGAAGGGAGTAAACAAGATTTCACTCAGATAAGACTAAGAATAGAATGTGATAGAGCCAAGTAGACCCATTTCAGTTTTCAGCCCAACAAAATTATAAAAATACCCAATATAAAACTTTATGGTTTAAATTCATTCTCTGAATATCCTACAACCCTGATCAAGACCCTTCCACGCCGTTCATCAAGATAGTCAGTCAACCACCGTACACCGCCTATCGTCTCCGTTAACACCGCTGTAGAAATGGCAGAAGGACAACACACCACCGCTGTAACAACCGGAAACCCTGAAGCGTCGCGGCAAGAACAAAACAATCCTTTCTTCTTCTTGTCTCTTATTCCAAAGTTTTTACTACAACCCTTTAATAATATTAAAAATAAGGGTGATAGTGAGAAATCTGTGAAAAGGGTTGATGGAGAAGAAGGTTCTGGAAGCAATACTAAAACCCCAGATGTTGTGAGGTTTCCTGCGACTCAGCCTGAAGTTGCTCCATTGAAGCTCGAGAATGAAGATGCTCAAGAGGATACTAATCCTTTAATTCTTTGGCAGGTATTTTTCTTTTTGATTTTTGTTAACTTTCTGGGTATATTTTTTTTATTAATTCCTAAATTTGGGATTCGGGTTATGTTTTTTTTATGTAATTAAGACTGTTATTATGGACAAGGGTACTGTTGGATTTGTGTTTTGAGTGAAATGGATTCAATCTTTGTGTTTATCTGTGCAATTAAAACGAGATTGAATTGGGTTAAGAAATGATTAGTTGGTAATTTAACTATGTTAAGAAATGATTAGTTGGTAATTTGATTGGGTTAAGAAATGATTAGTTGGTAATTTGATTGGGTTAAGAAATGTTTATTTGTATTATTTGTAAAGAGTATGATCGTCGATTCTGTGATTTGCTGTTGGATATTTTGGTTTGTTGACTATAGAGAGTTGGTGGTTCATATTTTCTGAGATTGATTGCCTTGTGAAATGGTTAGGGACCAATTCACTACTTGTTCAAGCCGAGTCAGGTTTTAATAGTTACGATGATAGTGTAATTTGAACGAACAATGTTACCAACCAACCCGGATGGAAGAAGGATTTGTTGGACCCGTGAGAGGCTTATGTAACATCATTGTTGTCAATTACATGATCTTCTTTTCTTTTTATGATTATGCAAATTCAATAGGTGCAAATGCTAATCTGAATGTAGGTTACATGGAAAAACATTTAGGGGGTTTGTACGAAGATTTGAGGTTTGAAATCTATCTGCAGTGATTTTAGCGCCTCTTTTTATGATATGTATTGGTGATGATTGATGACGTTTGACATTGGGCTGGAAAATATATAGAGTTAATAGGGGAAGTTGTCAATTATACGAAAACCACCATACCTAGACCAAAGATCCATTGAACTTTGATAATTGATTACTTTTACTTCTGAAATCGATAGTATGTGCACTGTCGCAGTTGGAGATTTGTTAAGAAGAGTTTTTTCTTTTCTTTTTTTTGAAACTTAAGATGGCGAGTTAGAGCATCTCCAATAGTAAGCTAATTTGACAATTATTTTGTTATGCCACATAAGAATTCAAGCTATTTCATTGTCTAGCTAATTTGTGCTCTAATGGATAGCAACTAGCTTGTTAATTAAATTAGTTTCACTTGTCCCACTTGTCAATTAATTATTTGACAACTTTGGGAGCTAGTTGTCAAGCAAATTAGCTTAAACAAGCTAATTTGCTTGGCCAAGCTAATTTAATATTTGCACTCTAATGGTCTAGCTATTAGCTTGAAACTTTTATAATTTTCAAGCTAGTGCCTAGCTACAACCATTAGAGATGCTCTTATAGTGATTACCTATTTGCAAGATTTTACACGGCGCAACTTAAATGGTGGGAATTAGCGTTCTACAGATTAACACTTGTCACCTTAGGCTTCATTCATTTCACTGTAAAGTACTTGTTTGAACTTTTATTGCCTAAACTTATTGGAGCCTATTTGAAATTATCATAGCTTATGTTAGTTGTGACTTAAATTGTCCAGGTGAGAGAACAAAGCATATTATGGAAGCTTTGACTAATGTTTATGAAAGTCTCAGGAAACCTTTTTGAGACGAACTAAAAGGGGACTTTGTAACTTTTCTTTGATGGCAAGTTTTTAACATCTCACTATTAGCTTGTTTGAGACCGTCTCACCCAAGATTTGCACATGTAACATGTTGTATAAATGTTAAAGAGTCTTGACTTCCCAGTTCCCACCCATTGATGGAATTTGCACTTTGGTTGTCGTAATTGACAACTTACTACTTACTAGTGTGAGTTTCAGAGTTGATGACTTTAACGTTTTGACAGATATATGCTCTTGGAGGATTCATAGTGTTGAAGTGGGCATGGGGAAAATGGCAGGAAAGGAAGGCAAACAACGGCTCATCTGGTGAAGATCAACCTCAACCTCCACCTTCAGCCACAGCCCCTGCTCCAGCTGAGGATTAATCTTCTTTTTCTTTTTCATTTGTAATTTCGCATTACCAGAGTTACTTACAATAGCCTTTTGAATTTATAGTCATCTTTCCTAATTGTGAAGGCTTCCAGTTTGGATAAATGAAAAGATGGAAATTATAGGAAGAGAATGGGGACTGAGGGACAGATTAAACTAACCAATCCACAAATACTTTCCTAATATGCTCTGTTTCTATAATTAATTTGGTGTTAGGAAAGGGCTATTACCGGTTCGTTCTACTTGTCACAACTATTCTCCCAGGGTAGTGTTCATATCAAACAACCGACTCGCAACACAAAACTTGGCCCCCCTTTTTCTGGACACATAAACGACCACCAATCTTACCATTTCTGGGGAGTTGATATCTTCAAGATGCACAATGACTGACTGCTGATCTTGTATAGATAGTTTTTTGATAAAGATTGTTTTCAGGCAGATTAAAGCAGATCCTGAAGGTTTCTTCAGAGAAAACATAGGCTACCTGGATAGTGATAAGTGATAACTGTCTGGTAAGTGGAGAGGGTGTTTTCTCATTGGTCTGAATGGTGAAATTGTTCACGAGCTGTGCGTTGTGTGGATTGAATCTGGTTGTGATGGTGTTTCGAAGAAAGGGTATCTGCAAATACCGTTAATTTTGAAGCTAGGAACCAAAAGATTTTAGTATATGAAACAAAGAGCTAGTACTCAAGATAAAATATGCAAATAATTTCGACCCCAAAAGAAAAGATCGACCCTTG

mRNA sequence

GGGACTCTTATAAAAATAGGAAGGGAGTAAACAAGATTTCACTCAGATAAGACTAAGAATAGAATGTGATAGAGCCAAGTAGACCCATTTCAGTTTTCAGCCCAACAAAATTATAAAAATACCCAATATAAAACTTTATGGTTTAAATTCATTCTCTGAATATCCTACAACCCTGATCAAGACCCTTCCACGCCGTTCATCAAGATAGTCAGTCAACCACCGTACACCGCCTATCGTCTCCGTTAACACCGCTGTAGAAATGGCAGAAGGACAACACACCACCGCTGTAACAACCGGAAACCCTGAAGCGTCGCGGCAAGAACAAAACAATCCTTTCTTCTTCTTGTCTCTTATTCCAAAGTTTTTACTACAACCCTTTAATAATATTAAAAATAAGGGTGATAGTGAGAAATCTGTGAAAAGGGTTGATGGAGAAGAAGGTTCTGGAAGCAATACTAAAACCCCAGATGTTGTGAGGTTTCCTGCGACTCAGCCTGAAGTTGCTCCATTGAAGCTCGAGAATGAAGATGCTCAAGAGGATACTAATCCTTTAATTCTTTGGCAGATATATGCTCTTGGAGGATTCATAGTGTTGAAGTGGGCATGGGGAAAATGGCAGGAAAGGAAGGCAAACAACGGCTCATCTGGTGAAGATCAACCTCAACCTCCACCTTCAGCCACAGCCCCTGCTCCAGCTGAGGATTAATCTTCTTTTTCTTTTTCATTTGTAATTTCGCATTACCAGAGTTACTTACAATAGCCTTTTGAATTTATAGTCATCTTTCCTAATTGTGAAGGCTTCCAGTTTGGATAAATGAAAAGATGGAAATTATAGGAAGAGAATGGGGACTGAGGGACAGATTAAACTAACCAATCCACAAATACTTTCCTAATATGCTCTGTTTCTATAATTAATTTGGTGTTAGGAAAGGGCTATTACCGGTTCGTTCTACTTGTCACAACTATTCTCCCAGGGTAGTGTTCATATCAAACAACCGACTCGCAACACAAAACTTGGCCCCCCTTTTTCTGGACACATAAACGACCACCAATCTTACCATTTCTGGGGAGTTGATATCTTCAAGATGCACAATGACTGACTGCTGATCTTGTATAGATAGTTTTTTGATAAAGATTGTTTTCAGGCAGATTAAAGCAGATCCTGAAGGTTTCTTCAGAGAAAACATAGGCTACCTGGATAGTGATAAGTGATAACTGTCTGGTAAGTGGAGAGGGTGTTTTCTCATTGGTCTGAATGGTGAAATTGTTCACGAGCTGTGCGTTGTGTGGATTGAATCTGGTTGTGATGGTGTTTCGAAGAAAGGGTATCTGCAAATACCGTTAATTTTGAAGCTAGGAACCAAAAGATTTTAGTATATGAAACAAAGAGCTAGTACTCAAGATAAAATATGCAAATAATTTCGACCCCAAAAGAAAAGATCGACCCTTG

Coding sequence (CDS)

ATGGCAGAAGGACAACACACCACCGCTGTAACAACCGGAAACCCTGAAGCGTCGCGGCAAGAACAAAACAATCCTTTCTTCTTCTTGTCTCTTATTCCAAAGTTTTTACTACAACCCTTTAATAATATTAAAAATAAGGGTGATAGTGAGAAATCTGTGAAAAGGGTTGATGGAGAAGAAGGTTCTGGAAGCAATACTAAAACCCCAGATGTTGTGAGGTTTCCTGCGACTCAGCCTGAAGTTGCTCCATTGAAGCTCGAGAATGAAGATGCTCAAGAGGATACTAATCCTTTAATTCTTTGGCAGATATATGCTCTTGGAGGATTCATAGTGTTGAAGTGGGCATGGGGAAAATGGCAGGAAAGGAAGGCAAACAACGGCTCATCTGGTGAAGATCAACCTCAACCTCCACCTTCAGCCACAGCCCCTGCTCCAGCTGAGGATTAA

Protein sequence

MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEEGSGSNTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQERKANNGSSGEDQPQPPPSATAPAPAED

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo09448.1	Spo09448.1	mRNA

Homology

[Close]

BLAST of Spo09448.1 vs. NCBI nr
Match: gi|515932|emb|CAA56654.1| (E24 ASN [Spinacia oleracea])

HSP 1 Score: 301.2 bits (770), Expect = 9.900e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


		  
Query: 1   MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE 60
           MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE
Sbjct: 1   MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE 60

Query: 61  GSGSNTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ 120
           GSGSNTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ
Sbjct: 61  GSGSNTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ 120

Query: 121 ERKANNGSSGEDQPQPPPSATAPAPAED 149
           ERKANNGSSGEDQPQPPPSATAPAPAED
Sbjct: 121 ERKANNGSSGEDQPQPPPSATAPAPAED 148

[Close]

BLAST of Spo09448.1 vs. NCBI nr
Match: gi|414200|emb|CAA53243.1| (chloroplast outer envelope 24 kD protein (omp24) [Spinacia oleracea])

HSP 1 Score: 298.1 bits (762), Expect = 8.400e-78
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 1


		  
Query: 1   MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE 60
           MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE
Sbjct: 1   MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE 60

Query: 61  GSGSNTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ 120
           GSGS TKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ
Sbjct: 61  GSGSYTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ 120

Query: 121 ERKANNGSSGEDQPQPPPSATAPAPAED 149
           ERKANNGSSGEDQPQPPPSATAPAPAED
Sbjct: 121 ERKANNGSSGEDQPQPPPSATAPAPAED 148

[Close]

BLAST of Spo09448.1 vs. NCBI nr
Match: gi|731329237|ref|XP_010675483.1| (PREDICTED: uncharacterized protein LOC104891484 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 172.9 bits (437), Expect = 4.100e-40
Identity = 93/146 (63.70%), Postives = 108/146 (73.97%), Query Frame = 1


		  
Query: 10  VTTGNPEASRQEQNNPFFFLSLIPKFLLQPF-----NNIKNKGDSEKSVKRVDGEEGSGS 69
           +TT   +A  Q+  NPF FLSLIPK +L+PF     NN  N  +S+KSVKRVD E   GS
Sbjct: 7   LTTETSDAPSQKPPNPFLFLSLIPKLILKPFANFNNNNNNNDNESDKSVKRVDSE---GS 66

Query: 70  NTKTPDVVRFPATQP-EVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQERK 129
            TKTPDVVRFP TQ  EV PLK+ENEDAQEDTNP++LWQ+YALGGFI+LKWAWGKWQERK
Sbjct: 67  KTKTPDVVRFPVTQKSEVPPLKVENEDAQEDTNPIVLWQVYALGGFIILKWAWGKWQERK 126

Query: 130 AN---NGSSGEDQPQPPPSATAPAPA 147
           A+   + S  E+QP  P  A APAPA
Sbjct: 127 ASAKKDASGEEEQPPAPVPAPAPAPA 149

[Close]

BLAST of Spo09448.1 vs. NCBI nr
Match: gi|697186267|ref|XP_009602172.1| (PREDICTED: uncharacterized protein LOC104097318 [Nicotiana tomentosiformis])

HSP 1 Score: 98.6 bits (244), Expect = 9.700e-18
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 1


		  
Query: 14  NPEASRQEQ--NNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEEGSGSNTKTPDV 73
           NP+A + E+  NNP F L      L +P    K K +   +       E SG   K P +
Sbjct: 15  NPDAGKDEKPNNNPIFSLLCSFLQLFKPPLPNKKKIEPTATTSEAKPTEVSGEEEKQPSI 74

Query: 74  VRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQERKANNGSSGE 133
           V+FP  + E+  LKLE+E A+ DTNP++LWQ+YA+GGF +L+WAW +W ER+ N   S +
Sbjct: 75  VKFP--RQELPSLKLESEGAEPDTNPVVLWQVYAIGGFFILRWAWTRWNERRGNGRPSND 134

Query: 134 DQPQPPPS 140
              +PPPS
Sbjct: 135 ---EPPPS 137

[Close]

BLAST of Spo09448.1 vs. NCBI nr
Match: gi|645252241|ref|XP_008232032.1| (PREDICTED: uncharacterized protein LOC103331200 [Prunus mume])

HSP 1 Score: 93.6 bits (231), Expect = 3.100e-16
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 1


		  
Query: 17  ASRQEQNNPFFFLSLIPKFLLQ-PFNNIKNKGD---SEKSVKRVDGEEGSGSNTKTPDVV 76
           +  ++   P    SL PKF LQ PF   ++K      ++  K V G+EG  S T+ PD V
Sbjct: 9   SKEEDPKGPKNLFSLFPKFKLQFPFLKQESKAGVAVEDEPTKAVAGDEGLESKTQKPDTV 68

Query: 77  RFPATQPEVAP-LKLENEDAQEDT-NPLILWQIYALGGFIVLKWAWGKWQERK-ANNGSS 136
           RFP  Q  V P + +ENE+    T NP+ILWQ+YA+GGF+VL+W W +W ER+    GSS
Sbjct: 69  RFPKAQLVVPPPVAVENEEPSTKTSNPIILWQVYAIGGFLVLRWIWARWNERRDRKEGSS 128

Query: 137 GEDQPQPPPSATAP 144
            +++  P    ++P
Sbjct: 129 DDERSSPDDERSSP 142

[Close]

BLAST of Spo09448.1 vs. UniProtKB/TrEMBL
Match: Q41393_SPIOL (E24 ASN OS=Spinacia oleracea GN=spiol E24 PE=2 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 6.900e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


		  
Query: 1   MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE 60
           MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE
Sbjct: 1   MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE 60

Query: 61  GSGSNTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ 120
           GSGSNTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ
Sbjct: 61  GSGSNTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ 120

Query: 121 ERKANNGSSGEDQPQPPPSATAPAPAED 149
           ERKANNGSSGEDQPQPPPSATAPAPAED
Sbjct: 121 ERKANNGSSGEDQPQPPPSATAPAPAED 148

[Close]

BLAST of Spo09448.1 vs. UniProtKB/TrEMBL
Match: Q41375_SPIOL (Chloroplast outer envelope 24 kD protein (Omp24) OS=Spinacia oleracea GN=omp24 PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 5.800e-78
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 1


		  
Query: 1   MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE 60
           MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE
Sbjct: 1   MAEGQHTTAVTTGNPEASRQEQNNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEE 60

Query: 61  GSGSNTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ 120
           GSGS TKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ
Sbjct: 61  GSGSYTKTPDVVRFPATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQ 120

Query: 121 ERKANNGSSGEDQPQPPPSATAPAPAED 149
           ERKANNGSSGEDQPQPPPSATAPAPAED
Sbjct: 121 ERKANNGSSGEDQPQPPPSATAPAPAED 148

[Close]

BLAST of Spo09448.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CM79_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g086750 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.800e-40
Identity = 93/146 (63.70%), Postives = 108/146 (73.97%), Query Frame = 1


		  
Query: 10  VTTGNPEASRQEQNNPFFFLSLIPKFLLQPF-----NNIKNKGDSEKSVKRVDGEEGSGS 69
           +TT   +A  Q+  NPF FLSLIPK +L+PF     NN  N  +S+KSVKRVD E   GS
Sbjct: 7   LTTETSDAPSQKPPNPFLFLSLIPKLILKPFANFNNNNNNNDNESDKSVKRVDSE---GS 66

Query: 70  NTKTPDVVRFPATQP-EVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQERK 129
            TKTPDVVRFP TQ  EV PLK+ENEDAQEDTNP++LWQ+YALGGFI+LKWAWGKWQERK
Sbjct: 67  KTKTPDVVRFPVTQKSEVPPLKVENEDAQEDTNPIVLWQVYALGGFIILKWAWGKWQERK 126

Query: 130 AN---NGSSGEDQPQPPPSATAPAPA 147
           A+   + S  E+QP  P  A APAPA
Sbjct: 127 ASAKKDASGEEEQPPAPVPAPAPAPA 149

[Close]

BLAST of Spo09448.1 vs. UniProtKB/TrEMBL
Match: A0A103YIE4_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_011957 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.700e-16
Identity = 52/137 (37.96%), Postives = 77/137 (56.20%), Query Frame = 1


		  
Query: 7   TTAVTTGNPEASRQEQ--NNPFFFLSLIPKFLLQPFNNIKNKGDSEKSVKRVDGEEGSGS 66
           T  VT  + E++R     N  F   + +  F L P   +K      ++ ++         
Sbjct: 39  TLIVTKTDDESNRPPNPFNAIFSKFTQVLNFRLPPLPPMKKDPVKVETERKAILHGDEVV 98

Query: 67  NTKTPDVVRFP-ATQPEVAPLKLENEDAQEDTNPLILWQIYALGGFIVLKWAWGKWQERK 126
             K    V +P A    VAPLKLE+E+A+++T+P++LWQ+YA+GGF +LKWAWG+W ER+
Sbjct: 99  EVKKSVTVTYPDARTKTVAPLKLESEEAEQETSPVVLWQVYAIGGFFILKWAWGRWNERR 158

Query: 127 ANNGSSGEDQPQPPPSA 141
           A    SGED P P P+A
Sbjct: 159 ARKKPSGEDTPSPSPTA 175

[Close]

BLAST of Spo09448.1 vs. UniProtKB/TrEMBL
Match: M5X109_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013015mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.700e-16
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 1


		  
Query: 17  ASRQEQNNPFFFLSLIPKFLLQ-PFNNIKNKGD---SEKSVKRVDGEEGSGSNTKTPDVV 76
           +  ++   P    SL PKF LQ PF   + K      ++ +K V G+EG  S T+ PD V
Sbjct: 9   SKEEDPKGPKNLFSLFPKFKLQFPFLKQEPKAGVAVEDEPMKAVAGDEGLESKTQKPDTV 68

Query: 77  RFPATQPEVAP-LKLENEDAQEDT-NPLILWQIYALGGFIVLKWAWGKWQERK-ANNGSS 136
           RFP  Q  V P + +ENE+    T NP+ILWQ+YA+GGF+VL+W W +W ER+    GSS
Sbjct: 69  RFPKAQLVVPPPVAVENEEPSTKTSNPIILWQVYAIGGFLVLRWIWARWNERRDRKEGSS 128

Query: 137 GEDQPQPPPSATAP 144
            +++  P    ++P
Sbjct: 129 DDERSSPDDERSSP 142

[Close]

BLAST of Spo09448.1 vs. TAIR (Arabidopsis)
Match: AT3G52230.1 (unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 4.200e-11
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1


		  
Query: 68  TPDVVRFPATQPEVA-PLKLENEDAQEDT-NPLILWQIYALGGFIVLKWAWGKWQERKAN 127
           T + V FP   P+ A P+K E E +   T N +ILWQ+YALGGF+VLKWAW +W ER   
Sbjct: 59  TYETVTFPYNPPKSAEPIKFEAEPSSGRTSNSVILWQVYALGGFLVLKWAWARWNERNER 118

Query: 128 NG---SSGED 133
           +    ++G+D
Sbjct: 119 SDKKEATGDD 128

The following BLAST results are available for this feature:

BLAST of Spo09448.1 vs. NCBI nr
BLAST of Spo09448.1 vs. UniProtKB/TrEMBL
BLAST of Spo09448.1 vs. ExPASy Swiss-Prot
BLAST of Spo09448.1 vs. TAIR (Arabidopsis)

BLAST of Spo09448.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|515932\|emb\|CAA56654.1\|	9.9e-79	100.	E24 ASN [Spinacia oleracea]	[more]
gi\|414200\|emb\|CAA53243.1\|	8.4e-78	99.3	chloroplast outer envelope 24 ...	[more]
gi\|731329237\|ref\|XP_010675483.1\|	4.1e-40	63.7	PREDICTED: uncharacterized pro...	[more]
gi\|697186267\|ref\|XP_009602172.1\|	9.7e-18	41.4	PREDICTED: uncharacterized pro...	[more]
gi\|645252241\|ref\|XP_008232032.1\|	3.1e-16	40.3	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo09448.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
Q41393_SPIOL	6.9e-79	100.	E24 ASN OS=Spinacia oleracea G...	[more]
Q41375_SPIOL	5.8e-78	99.3	Chloroplast outer envelope 24 ...	[more]
A0A0J8CM79_BETVU	2.8e-40	63.7	Uncharacterized protein OS=Bet...	[more]
A0A103YIE4_CYNCS	3.7e-16	37.9	Uncharacterized protein (Fragm...	[more]
M5X109_PRUPE	3.7e-16	40.3	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo09448.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo09448.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G52230.1	4.2e-11	47.1	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36374	FAMILY NOT NAMED	coord: 2..144 score: 8.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009657	plastid organization
biological_process	GO:0008152	metabolic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010114	response to red light
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0010304	PSII associated light-harvesting complex II catabolic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0042793	plastid transcription
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009533	chloroplast stromal thylakoid
cellular_component	GO:0016020	membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0016853	isomerase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18400	0.71	Barchart \| Table
Spo05296	0.71	Barchart \| Table
Spo01129	0.70	Barchart \| Table
Spo02573	0.69	Barchart \| Table
Spo21021	0.66	Barchart \| Table
Spo06031	0.66	Barchart \| Table
Spo14678	0.66	Barchart \| Table
Spo11446	0.65	Barchart \| Table
Spo02096	0.65	Barchart \| Table