Spo12613 (gene) | SpinachBase

Overview


Name	Spo12613
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 94883642 .. 94886610 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTGTTTCTGGTGGTCCTGCGAATTTCTTTACCTAGAGCATTTCTTGTTGCAGAGAAGCGCACGACGATGGAAGCGCTGGAAGGCCGACCAGACTGATGGTGGCCACGGCGGAGATCGGCAGACGGTTGAGCAACAGGAGGAGAGAGAAAGTGGCGGAGTTTCTATTGAGAAAGTGAAGCAGGTTTTGCGAAGAGTTTGAGGTTTTGGCCAAGGATCGAGGGTATAACGGACTTTTCAAAAGGGGACACGAAAAGTTATTTTACCAAAAAGACCTCAGCTGTTCCTTTATATAATAGAGATTTTGAATTTTTGATAGAAATATTGCAACGGTATTTTTTCAATTACTTAAATAAAATAAATTAATATTAAAAAATATTATAACATACGGAGAAAGTTACCAGAGTTTTTGTTTACTGAAAAAAAACGTTATTGAATTTTTTCTTATAGAGTTAATTTATTTGGGTTCCCTCTTCCAAACCTTATGTTTCACATTTCACCCCAAACCCTTCTTCATGTTCTTCGATCTTCTTTGTTCTTCTGTTTCATCTGCTTCGTTGTTCTTCGTTCTTCTTCTCTTTAATCTTCTTCGTTCTTGTGAATCCCCTTCATCGTCGTTTCCTGAAGCAAGGCGAATTTGAATTGGAAATTGGGTCTTTGAATTGAAGTTAAGGAGAAATTGGCAAATTGCGTTTCTGAATTGTCGATAAGGACAAGGTTAAATGGTATATATTTCATCGAATTTGGTCTTAAATTTCAAATTACATTGTTTAATTAACTGGTTACAATTGCATTTCTTGTGTGATTTTGAGGCCTAAATTAGGGTTCTTAATTAGGGAATTATGTTGATTTTTATTCATGTGCGTATGATTTATTTACAAATTTGTTTTGATTCCACAATTTCAATCAATTGTGTGAACGATCGATGGGTTATTTTGGATGATTTTATTCTGAATTTTGGTACTTTTAGTTGTTCTTTAATCTCCCCTTAGTTCCTGAACTGGTTCTTCCTATGAGTTCTTGTTGTATGTACAACAAAATACTTGCAGCTGCATCTATTTCTCTTATAAATTGCAAGTTTGTTTCCTATGAGTTCTTCAAATTCGTTTTTTTACCTTTTTAGTCACAAACCTGATTATTAATGCCACGAGCAAACACCTCCACATATGTTGCTGCTAGATTGTTTTTGGGTGTTTGGGTGTTGGGGGTTCCTGCCTGCTGGTTTCATTCTGTCCAGGCGTTGGGTGATGTTTCTTTGTTGATCTGTTGTTGCTGGTATTTTTTGATGGAGAGGAAGGGTAGTGTAGATTCCCTATTTTACTTCTTTATGATCAGTAGTATAAAAAATTATATTAGTAACCCTTATTAGTTATGAGCTCAATTTACACCAGTTATTAATAATGCATTAGTAACCGATGCCATCTTACCGCTTTAGAAATAACATGTTGAAAGTGAGTCTGACTTTCTGTACTCGGTAATCTCTGTAGTTTAGTGATGTTGGTGTTTGTTTACTGTATGCAATGTTGCTCTTCTGGTGTTTGCCTCTGCTTCTTCTAGCTTCTGGTTTCTGCAGGGTGCTGCTTTGGGGGAAGGCCTGTTGGTTTTGCTGTTGTCTATGCAGGCTGGCAGCTTCTTTGCTCAAGCTGGGTTCTGCTGCTTGGTTGTTGCGCTTCTTTGCACAGGGTGGGTGTTCCTTTGCTACTTCTGCTTCAGTTCTGTTGCACGTGTTGTTCTTTGTTTCTTTTATTTGTTTTACAGGCTGTTTTGCCTTTGTTTTTAGTGTTTTCTAGTGTATCTTTGTTTGGTTCTTCCTGTACTAGTGAGTCTGACCAAGTACTAGTAACTGATATAGATAGAACCCGCTAGAAATGCCTGGTCAAACTATGTTGACCTTATTTTTACTAAAGGAAAATAAGTATGAAGGTTGTAAATCGAGTCAAATTTATTTCAATATTTTTAGGTCTTATGAATAATCCCTTTTTTTACCCCCAAAAACCAACCCTAATTTCACTTCACTCACCAGAAGATCCATTATTTTTCTTTCAATTCTTCGTAATATAAGGTTAGTTTTTTAATTGCTTATTAATTATTCAAAAATTGAGTTTCCTTTCAGATATATCGAAAGTTAGGGTTTTCACTGGATTTTCCGGGCATGAAAAACTTAGATCTATTCAAATCATGATTTGCTTCAGGAACAGGAACTAGGAAAGACTTATCAATTTCTTCGCGCTCATCTTTCGATTCAACTACATCAGGAAGTTTTGCGAACTTGAAGCTCGATGCAGGTTCGATCATCATCTAACTTTAAGTCTTAATTTCATAAATTCACAGTTCTTTATTTATGTTAAATTCGTCCTGAAGGAGGAACTTGAAGAGAATTGGTGAATGAACAAGCGTATGTGAAACCTAACCTCAAACTCACTGTAATTTCTCCCTCAATAATGCTAACTAAGTACTATATATGTTTCTTGGTGAAGTGACTTATTTGATGCCCGCTAGATTTACCATCTACATTTAGTTGCTTGTAATTTCAGGTTTCAGTTGTTACTGCTCAATCTAGAATGCAAGGTTCAGGGGCAACTACTGTTGATTTGATGATGAAGGCAATGTCTTAGTGAGTAGCTGCCTTTTTTTCTTCGGGTTTCCGTTTCATTTGTTCTTCCTGTTGATATATTTTATGTGAAGCTTTTTATGTTTCTTAGAAGCTGAGTATGGGGCAGGGTTCCTTTTATCCCATAGAATGTCCCTTAGAAGGTTGGATGTTTAATGTAAGCCTAGTAAGAAGTTGTATTGGATAAAGTAGTTTATTTGTCTGCTAGTTATCAATAAAATGAAAATGCTACAATTTCTCCCTTCTGTAATGGAGATGAAATGGCCTTGCCAATGGTGTACAGAAGGAACCTCTTGTTACTTGGGTTCATAAAAATTTCAGGTTGGACTACCTATAACTACTTGAGTCCTTTGTCG

mRNA sequence

ATGCCCTGTTTCTGGTGGTCCTGCGAATTTCTTTACCTAGAGCATTTCTTGTTGCAGAGAAGCGCACGACGATGGAAGCGCTGGAAGGCCGACCAGACTGATGGTGGCCACGGCGGAGATCGGCAGACGGTTGAGCAACAGGAGGAGAGAGAAAGTGGCGGAGTTTCTATTGAGAAAGTGAAGCAGTTTAGTGATGTTGGTGTTTGTTTACTGTATGCAATGTTGCTCTTCTGGTGTTTGCCTCTGCTTCTTCTAGCTTCTGGTTTCTGCAGGGTGCTGCTTTGGGGGAAGGCCTGTTGGTTTTGCTGTTGTCTATGCAGGCTGGCAGCTTCTTTGCTCAAGCTGGGTTCTGCTGCTTGGTTGTTGCGCTTCTTTGCACAGGGAACAGGAACTAGGAAAGACTTATCAATTTCTTCGCGCTCATCTTTCGATTCAACTACATCAGGAAGTTTTGCGAACTTGAAGCTCGATGCAGGAGGAACTTGAAGAGAATTGGTGAATGAACAAGCGTATGTGAAACCTAACCTCAAACTCACTGTAATTTCTCCCTCAATAATGCTAACTAAGTACTATATATGTTTCTTGGTGAAGTGACTTATTTGATGCCCGCTAGATTTACCATCTACATTTAGTTGCTTGTAATTTCAGGTTTCAGTTGTTACTGCTCAATCTAGAATGCAAGGTTCAGGGGCAACTACTGTTGATTTGATGATGAAGGCAATGTCTTAGTGAGTAGCTGCCTTTTTTTCTTCGGGTTTCCGTTTCATTTGTTCTTCCTGTTGATATATTTTATGTGAAGCTTTTTATGTTTCTTAGAAGCTGAGTATGGGGCAGGGTTCCTTTTATCCCATAGAATGTCCCTTAGAAGGTTGGATGTTTAATGTAAGCCTAGTAAGAAGTTGTATTGGATAAAGTAGTTTATTTGTCTGCTAGTTATCAATAAAATGAAAATGCTACAATTTCTCCCTTCTGTAATGGAGATGAAATGGCCTTGCCAATGGTGTACAGAAGGAACCTCTTGTTACTTGGGTTCATAAAAATTTCAGGTTGGACTACCTATAACTACTTGAGTCCTTTGTCG

Coding sequence (CDS)

ATGCCCTGTTTCTGGTGGTCCTGCGAATTTCTTTACCTAGAGCATTTCTTGTTGCAGAGAAGCGCACGACGATGGAAGCGCTGGAAGGCCGACCAGACTGATGGTGGCCACGGCGGAGATCGGCAGACGGTTGAGCAACAGGAGGAGAGAGAAAGTGGCGGAGTTTCTATTGAGAAAGTGAAGCAGTTTAGTGATGTTGGTGTTTGTTTACTGTATGCAATGTTGCTCTTCTGGTGTTTGCCTCTGCTTCTTCTAGCTTCTGGTTTCTGCAGGGTGCTGCTTTGGGGGAAGGCCTGTTGGTTTTGCTGTTGTCTATGCAGGCTGGCAGCTTCTTTGCTCAAGCTGGGTTCTGCTGCTTGGTTGTTGCGCTTCTTTGCACAGGGAACAGGAACTAGGAAAGACTTATCAATTTCTTCGCGCTCATCTTTCGATTCAACTACATCAGGAAGTTTTGCGAACTTGAAGCTCGATGCAGGAGGAACTTGA

Protein sequence

MPCFWWSCEFLYLEHFLLQRSARRWKRWKADQTDGGHGGDRQTVEQQEERESGGVSIEKVKQFSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLLRFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12613.1	Spo12613.1	mRNA

Homology

[Close]

BLAST of Spo12613.1 vs. NCBI nr
Match: gi|902147907|gb|KNA05198.1| (hypothetical protein SOVF_192580, partial [Spinacia oleracea])

HSP 1 Score: 195.7 bits (496), Expect = 6.400e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1

		  
Query: 63  FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL 122
           FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL
Sbjct: 1   FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL 60

Query: 123 RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT 162
           RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT
Sbjct: 61  RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT 99

[Close]

BLAST of Spo12613.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEV7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_192580 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.400e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1

		  
Query: 63  FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL 122
           FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL
Sbjct: 1   FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL 60

Query: 123 RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT 162
           RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT
Sbjct: 61  RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT 99

The following BLAST results are available for this feature:

BLAST of Spo12613.1 vs. NCBI nr
BLAST of Spo12613.1 vs. UniProtKB/TrEMBL
BLAST of Spo12613.1 vs. ExPASy Swiss-Prot
BLAST of Spo12613.1 vs. TAIR (Arabidopsis)

BLAST of Spo12613.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902147907\|gb\|KNA05198.1\|	6.4e-47	100.	hypothetical protein SOVF_1925...	[more]

BLAST of Spo12613.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QEV7_SPIOL	4.4e-47	100.	Uncharacterized protein (Fragm...	[more]

BLAST of Spo12613.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12613.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo02749	0.69	Barchart \| Table
Spo12423	0.68	Barchart \| Table
Spo14240	0.68	Barchart \| Table
Spo14942	0.67	Barchart \| Table
Spo20555	0.65	Barchart \| Table