Spo23152 (gene) | SpinachBase

Overview


Name	Spo23152
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	chr4 : 120348497 .. 120350633 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCCACCCTTCTACCGTCGCAACTAACACCTTTTACCACCCGATTTTCTCTCTCCTCGCCCAACCCAAAACCACCCTCATTTTCCACCACCGTCTACTGTGGCCCCAGAGACAACCGTGGACCGCTAGTAAAAGGCCGAGTACTAAGCACAGAAGCAATCCAAGCAGTCCAAGCTCTAAAACGAGCCCAAAGAACCACCACAACCACCACCACCACCGTCAACGAAACCCTAACAAAAACCCTCTCACGCCTCATAAAATCCGACCTCGTTGCTACTCTACGGGAGCTTCTACGACAAGGACACTGCGACCTCGCCCTCACTGTATTCTCCACCGTCCGATCAGAACCCTGGTACAAGACAGATTTATCCCTGTACGCAGATTTGGTTTCAGCTTTGAACAAGATGGGTGGGATGGGAGAGGATATTGACCGTCTGATTGAGGAGATGGACGGTGGTGATGGGGTGATTAATTGGGAGGATAAGAAAGGGTTGAGTAGGTTGGTGAAGGCGTTGATTAATGCTGAGAGGAGGGAATCAACGGTCAGGATTTATGGGGTGATGAAGAAATGTGGGTGGGGGTGTAGTGGATCAGGTGTTGAAGTTGATGAGTATGTGGCTAAGGTTTTGAGTAAAGGGTTAAGAAGATTTGGGGAGGAGAGTTTGGCTAATGAGGTTGATTTGGGTCTTGATTTGTACTTGAAAGCTTGTTTGGGTAGAGTTGGTTTTTAGGTAAACGGGTCAGTCAATCTTGGTTGCGGGATCTTAAAAGACGTGATGGGTAAAATCGATGAATGGGTAGAGTTGGTTTAACGGGCAAGTCTATCTCAGTTGCGTGATCTTGAAAGACGTGATGGGTAAAACCGATGATTGAGTAACCGAAATAACGGTTTTACGTTATAGAGTTTTTAATTGAGCTAACGATGTTACTTTCTACGCCTTGTTTAGATTTAGTAGTTCAATTTTGGGTACAAAAGTATATTTAGGGAATAGGATTGTACGGAATAATATGTAAGAGTTTTTTTTTTTGGAGGGGTAATTATGGGATGATATATGACCTTAATTATCTTGTGGTGTTCATTTTGAGTAGTATTTACATTACTACATGCATGTAACACAATTGTATGTGCTCTTGTTTTATAATCACTATGTTTATAACTCATGTAACACAATTGTATATGGCTATATGCTCTTATAGTCTTATTTTATGGAGATCACTATGTTTACAACTTTAGTAGGCAAAGAAGCTGAATGGTTAGTTATGCGTCACTTATGCTATAATATGACCTTTTCGTTTGTAAGTTGAGAGATTCTAACAACTTCTTACTACGAAGATGTAAGTCCAAGTTTACGTTGATTGACAAAAAAACTGGAAAACAAATTACTCCGCAAGTCCATAATATATCGTTGACTCTGCTTCCTTAGTTATATTTTTTTTGACAAACCGCGATAATTTGAGAAGAATAATACTAGTGGAACATTTTTTATAGCTCACCAGAATTGGATAAAGCTAACAAAATTGATTTCAATCAATGTAAATTGCATTAAGAAAACCAACACCCNTAGAACATGCTTGAATAAATTTAGAACATGCTTAAATAAATTTAGAACATGAGCTTACAAATTTAGAACATGCTTGAATAAAATTAAACGTGCTTGAATAAATTTAGAATATGGCTGAACCAATTTAGAATATGGTTAAATAAGTTTAGAACATGGTTGAATAAATTTAGAACATGAGTTTGAAAAAGTGTTGAACAAATATAGAACATAGAGAGTGTAAAAGTGTTCTCACCATAAGAAGTGTTCTCACATAAGGAGGTGTTNTCACCGGATATATACCCTATATATATATATATATATATATATATATATATATATATATATACTTTCAGAACATTACTATTTTTATAAGTTTTTATGATATATAATTTAAGATATTGGTGGTCAAAGTTGTGCATTGACAAACATGTTCAGGATATAGAGAGTTATTCCGCCTTTTATTTATTTTTAATTTTTAATTTTTTAATTTTAGAAGTCAACCTATCCATGAGTTTACAGTCAATGAGGGAAGACCCCATAGTTTTTTTTTAAAATATTTTTTGCGTCAGTCTCGTTGTCCTTGAATGGTTAA

mRNA sequence

ATGACATCCACCCTTCTACCGTCGCAACTAACACCTTTTACCACCCGATTTTCTCTCTCCTCGCCCAACCCAAAACCACCCTCATTTTCCACCACCGTCTACTGTGGCCCCAGAGACAACCGTGGACCGCTAGTAAAAGGCCGAGTACTAAGCACAGAAGCAATCCAAGCAGTCCAAGCTCTAAAACGAGCCCAAAGAACCACCACAACCACCACCACCACCGTCAACGAAACCCTAACAAAAACCCTCTCACGCCTCATAAAATCCGACCTCGTTGCTACTCTACGGGAGCTTCTACGACAAGGACACTGCGACCTCGCCCTCACTGTATTCTCCACCGTCCGATCAGAACCCTGGTACAAGACAGATTTATCCCTGTACGCAGATTTGGTTTCAGCTTTGAACAAGATGGGTGGGATGGGAGAGGATATTGACCGTCTGATTGAGGAGATGGACGGTGGTGATGGGGTGATTAATTGGGAGGATAAGAAAGGGTTGAGTAGGTTGGTGAAGGCGTTGATTAATGCTGAGAGGAGGGAATCAACGGTCAGGATTTATGGGGTGATGAAGAAATGTGGGTGGGGGTGTAGTGGATCAGGTGTTGAAGTTGATGAGTATGTGGCTAAGGTTTTGAGTAAAGGGTTAAGAAGATTTGGGGAGGAGAGTTTGGCTAATGAGGTTGATTTGGGTCTTGATTTGTACTTGAAAGCTTGTTTGGGTAGAGTTGTCTCGTTGTCCTTGAATGGTTAA

Coding sequence (CDS)

ATGACATCCACCCTTCTACCGTCGCAACTAACACCTTTTACCACCCGATTTTCTCTCTCCTCGCCCAACCCAAAACCACCCTCATTTTCCACCACCGTCTACTGTGGCCCCAGAGACAACCGTGGACCGCTAGTAAAAGGCCGAGTACTAAGCACAGAAGCAATCCAAGCAGTCCAAGCTCTAAAACGAGCCCAAAGAACCACCACAACCACCACCACCACCGTCAACGAAACCCTAACAAAAACCCTCTCACGCCTCATAAAATCCGACCTCGTTGCTACTCTACGGGAGCTTCTACGACAAGGACACTGCGACCTCGCCCTCACTGTATTCTCCACCGTCCGATCAGAACCCTGGTACAAGACAGATTTATCCCTGTACGCAGATTTGGTTTCAGCTTTGAACAAGATGGGTGGGATGGGAGAGGATATTGACCGTCTGATTGAGGAGATGGACGGTGGTGATGGGGTGATTAATTGGGAGGATAAGAAAGGGTTGAGTAGGTTGGTGAAGGCGTTGATTAATGCTGAGAGGAGGGAATCAACGGTCAGGATTTATGGGGTGATGAAGAAATGTGGGTGGGGGTGTAGTGGATCAGGTGTTGAAGTTGATGAGTATGTGGCTAAGGTTTTGAGTAAAGGGTTAAGAAGATTTGGGGAGGAGAGTTTGGCTAATGAGGTTGATTTGGGTCTTGATTTGTACTTGAAAGCTTGTTTGGGTAGAGTTGTCTCGTTGTCCTTGAATGGTTAA

Protein sequence

MTSTLLPSQLTPFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQALKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWYKTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRESTVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLGRVVSLSLNG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo23152.1	Spo23152.1	mRNA

Homology

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BLAST of Spo23152.1 vs. NCBI nr
Match: gi|902231913|gb|KNA22445.1| (hypothetical protein SOVF_033260 [Spinacia oleracea])

HSP 1 Score: 469.5 bits (1207), Expect = 3.500e-129
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


		  
Query: 1   MTSTLLPSQLTPFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQA 60
           MTSTLLPSQLTPFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQA
Sbjct: 1   MTSTLLPSQLTPFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQA 60

Query: 61  LKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWY 120
           LKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWY
Sbjct: 61  LKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWY 120

Query: 121 KTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRE 180
           KTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRE
Sbjct: 121 KTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRE 180

Query: 181 STVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLG 240
           STVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLG
Sbjct: 181 STVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLG 240

Query: 241 RV 243
           RV
Sbjct: 241 RV 242

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BLAST of Spo23152.1 vs. NCBI nr
Match: gi|731335843|ref|XP_010678937.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 347.8 bits (891), Expect = 1.500e-92
Identity = 194/246 (78.86%), Postives = 211/246 (85.77%), Query Frame = 1


		  
Query: 3   STLLPSQLTPFTTRFSLSSPNPKPPSF-STTVYCGPRDNRGPLVKGRVLSTEAIQAVQAL 62
           ++ L SQLTPF TR  LSSP+ K PSF +TT+YCGPR NRGPLVKGRVLSTEAIQAVQAL
Sbjct: 2   ASALHSQLTPFMTRLCLSSPSLKSPSFPTTTIYCGPRGNRGPLVKGRVLSTEAIQAVQAL 61

Query: 63  KRAQRTTTTTTTTVNETLTK-TLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWY 122
           KRAQR+TTT    ++ET++K TLSRLIKSDLVATLRELLRQGHCDLAL VFSTVRSEPWY
Sbjct: 62  KRAQRSTTTNI--IDETVSKKTLSRLIKSDLVATLRELLRQGHCDLALVVFSTVRSEPWY 121

Query: 123 KTDLSLYADLVSALNKMGGMGEDIDRLIE----EMDGGDGVINWEDKKGLSRLVKALINA 182
           KTDLS+YADLV AL+K G M +DID LIE    E+DGG GVI+W+DKKGLSRLVKALI A
Sbjct: 122 KTDLSIYADLVLALDKKGEMEDDIDHLIEQLEMEIDGG-GVIDWDDKKGLSRLVKALIGA 181

Query: 183 ERRESTVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLK 242
           ERRESTVRIY VMKK GWGC GSGVEVDEYVAKVLSKGLRRFGE   A EV+L LD YLK
Sbjct: 182 ERRESTVRIYKVMKKGGWGCRGSGVEVDEYVAKVLSKGLRRFGESVWAEEVELALDWYLK 241

[Close]

BLAST of Spo23152.1 vs. NCBI nr
Match: gi|359482912|ref|XP_003632859.1| (PREDICTED: uncharacterized protein LOC100251441 [Vitis vinifera])

HSP 1 Score: 224.6 bits (571), Expect = 2.000e-55
Identity = 137/233 (58.80%), Postives = 169/233 (72.53%), Query Frame = 1


		  
Query: 15  TRFSLSSPNPKPPSFSTT-----VYCGPRDNRGPLVKGRVLSTEAIQAVQALKRAQRTTT 74
           + F+L SP  KP    TT     + CGPRDNRGPL+KGRVLS EAIQA+Q+LKRA R   
Sbjct: 8   SNFALFSPIKKPVQTITTTSYTPIRCGPRDNRGPLMKGRVLSIEAIQAIQSLKRAHRGDP 67

Query: 75  TTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWYKTDLSLYAD 134
           T    +++ L+KTLSRL+K+DL+ATL ELLRQ  CDLAL VFS VRSE WYKT+LSLYAD
Sbjct: 68  TK---IDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFSAVRSELWYKTELSLYAD 127

Query: 135 LVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRESTVRIYGVM 194
           LVSAL +  GM E+IDRLI +++ G+G +  +D KG+ RLVKA+I AERR+STVRIYG+M
Sbjct: 128 LVSALARK-GMKEEIDRLICDLE-GEGSVRCDD-KGIVRLVKAVIAAERRDSTVRIYGLM 187

Query: 195 KKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLGRV 243
           K+   GC G     DEYV +VLS+GLRR GE  +A+EVDL      K  L +V
Sbjct: 188 KRS--GCGGG----DEYVGRVLSRGLRRLGELGVADEVDLEFGRLSKGNLEKV 228

[Close]

BLAST of Spo23152.1 vs. NCBI nr
Match: gi|1009112149|ref|XP_015866768.1| (PREDICTED: uncharacterized protein LOC107404331 [Ziziphus jujuba])

HSP 1 Score: 212.6 bits (540), Expect = 7.800e-52
Identity = 135/242 (55.79%), Postives = 169/242 (69.83%), Query Frame = 1


		  
Query: 1   MTSTLLPSQLTPFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQA 60
           M ++L P+  T   T    S+ N    S    + CGPRDNRGPLVKGRVLS EAIQAVQ+
Sbjct: 1   MATSLHPNPTTFLKTHLPKSNLNNSTAS-RFLIRCGPRDNRGPLVKGRVLSIEAIQAVQS 60

Query: 61  LKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWY 120
           LKRAQR+  T  +T+   ++KTLSRLIK+DLVATL+ELLRQ  C LAL VFS +RSE  +
Sbjct: 61  LKRAQRSDPTNISTL---VSKTLSRLIKADLVATLKELLRQDQCALALHVFSNLRSE--H 120

Query: 121 KTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRE 180
           +  LSLYADLV AL K  GM E+IDRLI +++   G I  +D KGL RL++A++ AERRE
Sbjct: 121 EPGLSLYADLVMALAK-NGMAEEIDRLIFDLEKEGGGIPCDD-KGLIRLIRAVVGAERRE 180

Query: 181 STVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLG 240
           STVRIYG+MK+ GWG   SG + DEY+ K LS+GLRR GE  LA+EVD     + K  L 
Sbjct: 181 STVRIYGMMKRSGWG--SSGFKADEYMVKALSRGLRRVGEVGLADEVDKEFGTFSKGNLE 232

Query: 241 RV 243
           ++
Sbjct: 241 KL 232

[Close]

BLAST of Spo23152.1 vs. NCBI nr
Match: gi|449448168|ref|XP_004141838.1| (PREDICTED: uncharacterized protein LOC101217831 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 1.000e-51
Identity = 124/230 (53.91%), Postives = 167/230 (72.61%), Query Frame = 1


		  
Query: 3   STLLPSQLT---PFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQ 62
           ST L SQ++   P +T  S       P + S  V CGPRDNRGPLVKGR LS EAIQA+Q
Sbjct: 7   STFLKSQISIPIPASTATS-------PVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQ 66

Query: 63  ALKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPW 122
           +LKRA+R+  T    + + L+ TLSRL+K+DLVATL+ELLRQ  C LAL VF+ ++SE  
Sbjct: 67  SLKRAERSDPTK---LQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSE-- 126

Query: 123 YKTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINW-EDKKGLSRLVKALINAER 182
           Y+ +L LYA++ +AL++  G  E+IDRL+ ++DGGDGVI W +D KGL +L+KA+I+  R
Sbjct: 127 YRAELGLYAEVAAALSR-NGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNR 186

Query: 183 RESTVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVD 229
           RESTVRIY +M++ GW   GS ++ D+Y+ KVLSKGLRR GE  LA+E++
Sbjct: 187 RESTVRIYRMMRRKGW---GSMIKADDYMIKVLSKGLRRLGEIELADEIN 220

[Close]

BLAST of Spo23152.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSC3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_033260 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 2.500e-129
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


		  
Query: 1   MTSTLLPSQLTPFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQA 60
           MTSTLLPSQLTPFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQA
Sbjct: 1   MTSTLLPSQLTPFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQA 60

Query: 61  LKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWY 120
           LKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWY
Sbjct: 61  LKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWY 120

Query: 121 KTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRE 180
           KTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRE
Sbjct: 121 KTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRE 180

Query: 181 STVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLG 240
           STVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLG
Sbjct: 181 STVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLG 240

Query: 241 RV 243
           RV
Sbjct: 241 RV 242

[Close]

BLAST of Spo23152.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCY9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118320 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.100e-92
Identity = 194/246 (78.86%), Postives = 211/246 (85.77%), Query Frame = 1


		  
Query: 3   STLLPSQLTPFTTRFSLSSPNPKPPSF-STTVYCGPRDNRGPLVKGRVLSTEAIQAVQAL 62
           ++ L SQLTPF TR  LSSP+ K PSF +TT+YCGPR NRGPLVKGRVLSTEAIQAVQAL
Sbjct: 2   ASALHSQLTPFMTRLCLSSPSLKSPSFPTTTIYCGPRGNRGPLVKGRVLSTEAIQAVQAL 61

Query: 63  KRAQRTTTTTTTTVNETLTK-TLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWY 122
           KRAQR+TTT    ++ET++K TLSRLIKSDLVATLRELLRQGHCDLAL VFSTVRSEPWY
Sbjct: 62  KRAQRSTTTNI--IDETVSKKTLSRLIKSDLVATLRELLRQGHCDLALVVFSTVRSEPWY 121

Query: 123 KTDLSLYADLVSALNKMGGMGEDIDRLIE----EMDGGDGVINWEDKKGLSRLVKALINA 182
           KTDLS+YADLV AL+K G M +DID LIE    E+DGG GVI+W+DKKGLSRLVKALI A
Sbjct: 122 KTDLSIYADLVLALDKKGEMEDDIDHLIEQLEMEIDGG-GVIDWDDKKGLSRLVKALIGA 181

Query: 183 ERRESTVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLK 242
           ERRESTVRIY VMKK GWGC GSGVEVDEYVAKVLSKGLRRFGE   A EV+L LD YLK
Sbjct: 182 ERRESTVRIYKVMKKGGWGCRGSGVEVDEYVAKVLSKGLRRFGESVWAEEVELALDWYLK 241

[Close]

BLAST of Spo23152.1 vs. UniProtKB/TrEMBL
Match: D7U0G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04100 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.400e-55
Identity = 137/233 (58.80%), Postives = 169/233 (72.53%), Query Frame = 1


		  
Query: 15  TRFSLSSPNPKPPSFSTT-----VYCGPRDNRGPLVKGRVLSTEAIQAVQALKRAQRTTT 74
           + F+L SP  KP    TT     + CGPRDNRGPL+KGRVLS EAIQA+Q+LKRA R   
Sbjct: 8   SNFALFSPIKKPVQTITTTSYTPIRCGPRDNRGPLMKGRVLSIEAIQAIQSLKRAHRGDP 67

Query: 75  TTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWYKTDLSLYAD 134
           T    +++ L+KTLSRL+K+DL+ATL ELLRQ  CDLAL VFS VRSE WYKT+LSLYAD
Sbjct: 68  TK---IDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFSAVRSELWYKTELSLYAD 127

Query: 135 LVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRESTVRIYGVM 194
           LVSAL +  GM E+IDRLI +++ G+G +  +D KG+ RLVKA+I AERR+STVRIYG+M
Sbjct: 128 LVSALARK-GMKEEIDRLICDLE-GEGSVRCDD-KGIVRLVKAVIAAERRDSTVRIYGLM 187

Query: 195 KKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKACLGRV 243
           K+   GC G     DEYV +VLS+GLRR GE  +A+EVDL      K  L +V
Sbjct: 188 KRS--GCGGG----DEYVGRVLSRGLRRLGELGVADEVDLEFGRLSKGNLEKV 228

[Close]

BLAST of Spo23152.1 vs. UniProtKB/TrEMBL
Match: A0A0A0K6N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447050 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 7.100e-52
Identity = 124/230 (53.91%), Postives = 167/230 (72.61%), Query Frame = 1


		  
Query: 3   STLLPSQLT---PFTTRFSLSSPNPKPPSFSTTVYCGPRDNRGPLVKGRVLSTEAIQAVQ 62
           ST L SQ++   P +T  S       P + S  V CGPRDNRGPLVKGR LS EAIQA+Q
Sbjct: 7   STFLKSQISIPIPASTATS-------PVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQ 66

Query: 63  ALKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPW 122
           +LKRA+R+  T    + + L+ TLSRL+K+DLVATL+ELLRQ  C LAL VF+ ++SE  
Sbjct: 67  SLKRAERSDPTK---LQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSE-- 126

Query: 123 YKTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINW-EDKKGLSRLVKALINAER 182
           Y+ +L LYA++ +AL++  G  E+IDRL+ ++DGGDGVI W +D KGL +L+KA+I+  R
Sbjct: 127 YRAELGLYAEVAAALSR-NGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNR 186

Query: 183 RESTVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVD 229
           RESTVRIY +M++ GW   GS ++ D+Y+ KVLSKGLRR GE  LA+E++
Sbjct: 187 RESTVRIYRMMRRKGW---GSMIKADDYMIKVLSKGLRRLGEIELADEIN 220

[Close]

BLAST of Spo23152.1 vs. UniProtKB/TrEMBL
Match: W9R688_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026238 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.600e-51
Identity = 139/245 (56.73%), Postives = 165/245 (67.35%), Query Frame = 1


		  
Query: 3   STLLPSQLTPFTTRFSLSSPNPKPPSFSTTVY----CGPRDNRGPLVKGRVLSTEAIQAV 62
           +T LP    PF  +  L  P P   +  T+ Y    CGPRDNRGPLVKGR+LS EAIQAV
Sbjct: 2   ATTLPPHPAPFL-KTPLPIPKPNTTTAITSSYAPIRCGPRDNRGPLVKGRILSIEAIQAV 61

Query: 63  QALKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEP 122
           QALKRA R+  +T  TV    +KTLSRLIKSDL+A L+ELLRQ HC LAL VFS VRSE 
Sbjct: 62  QALKRAHRSDPSTLPTV---ASKTLSRLIKSDLLAALKELLRQDHCALALHVFSAVRSE- 121

Query: 123 WYKTDLSLYADLVSALNKMGGMGEDIDRLIEEMD-GGDGVINWEDKKGLSRLVKALINAE 182
            Y+ DLSLYAD+V AL K  GM EDIDRLI +++  G G +  +D KGL RLV+A+I AE
Sbjct: 122 -YRPDLSLYADMVIALEK-NGMAEDIDRLIFDLEMEGCGAVG-DDNKGLIRLVRAVIAAE 181

Query: 183 RRESTVRIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDLGLDLYLKA 242
           RRESTVRIYG++K    G   SG E D++    LSKGLRR GE +LA+EVD       K 
Sbjct: 182 RRESTVRIYGMLKMGVLG--SSGFEADDHTVGALSKGLRRLGEAALADEVDREFGRSQKG 236

[Close]

BLAST of Spo23152.1 vs. ExPASy Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.200e-6
Identity = 39/142 (27.46%), Postives = 74/142 (52.11%), Query Frame = 1


		  
Query: 50  LSTEAIQAVQALKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALT 109
           +S E + A + LKR Q    T +  ++  +   +SRL+KSDLV+ L E  RQ    L + 
Sbjct: 1   MSKEGLIAAKELKRLQ----TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMK 60

Query: 110 VFSTVRSEPWYKTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRL 169
           ++  VR E WY+ D+  Y D++  L +   + ++  ++ E++   + +    D+     L
Sbjct: 61  LYEVVRREIWYRPDMFFYRDMLMMLARNKKV-DETKKVWEDLKKEEVLF---DQHTFGDL 120

Query: 170 VKALINAERRESTVRIYGVMKK 192
           V+  ++ E     +R+YG M++
Sbjct: 121 VRGFLDNELPLEAMRLYGEMRE 134

[Close]

BLAST of Spo23152.1 vs. TAIR (Arabidopsis)
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 183.7 bits (465), Expect = 1.400e-46
Identity = 112/226 (49.56%), Postives = 151/226 (66.81%), Query Frame = 1


		  
Query: 18  SLSSPNPKPPSFS--------------TTVYCGPRDNRGPLVKGRVLSTEAIQAVQALKR 77
           +LS    +PPS S               ++ CGPRDNRGPL+KGR+LSTEAIQ++Q+LKR
Sbjct: 2   ALSLSQTRPPSLSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSIQSLKR 61

Query: 78  AQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALTVFSTVRSEPWYKTD 137
           A RT  + + T+     + L RLIKSDL++ LRELLRQ +C LA+ V ST+R+E +   D
Sbjct: 62  AHRTGVSLSLTL-----RPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTE-YPPLD 121

Query: 138 LSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRLVKALINAERRESTV 197
           L LYAD+V+AL +     ++IDRLI E+DG D      D K L++L++A++ AERRES V
Sbjct: 122 LVLYADIVNALTRNKEF-DEIDRLIGEIDGID---QRSDDKALAKLIRAVVGAERRESVV 181

Query: 198 RIYGVMKKCGWGCSGSGVEVDEYVAKVLSKGLRRFGEESLANEVDL 230
           R+Y +M++ GWG      E DEYVA+VLSKGL R GE  LA++V L
Sbjct: 182 RVYTLMRESGWG--SESWEADEYVAEVLSKGLLRLGEPDLASQVSL 215

[Close]

BLAST of Spo23152.1 vs. TAIR (Arabidopsis)
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 95.5 bits (236), Expect = 4.900e-20
Identity = 67/196 (34.18%), Postives = 103/196 (52.55%), Query Frame = 1


		  
Query: 40  NRGPLVKGRVLSTEAIQAVQALKRAQ-----------RTTTTTTTTVNETLTKTLSRLIK 99
           NR PL +GR+LS EAIQAVQALKRA             TT++++  ++  +     RL+K
Sbjct: 495 NRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 554

Query: 100 SDLVATLRELLRQGHCDLALTVFSTVRSEPWYKTDLSLYADLVSALNKMGGMGEDIDRLI 159
            D+VA LRELLRQ  C LAL VF  +R E WYK  + +Y D+++ +     + E+++ L 
Sbjct: 555 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMAD-NSLMEEVNYLY 614

Query: 160 EEMDGGDGVINWEDKKGLSRLVKALINAERRESTVRIYGVMKKCGWGCSGSGVEVDEYVA 219
             M    G++   + +  + L+  L+N +  +  +  Y  M+  G+       E D    
Sbjct: 615 SAMKSEKGLM--AEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGY-------EPDRASF 674

Query: 220 KVLSKGLRRFGEESLA 225
           +VL  GL   GE  L+
Sbjct: 675 RVLVLGLESNGEMGLS 680

[Close]

BLAST of Spo23152.1 vs. TAIR (Arabidopsis)
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.200e-7
Identity = 39/142 (27.46%), Postives = 74/142 (52.11%), Query Frame = 1


		  
Query: 50  LSTEAIQAVQALKRAQRTTTTTTTTVNETLTKTLSRLIKSDLVATLRELLRQGHCDLALT 109
           +S E + A + LKR Q    T +  ++  +   +SRL+KSDLV+ L E  RQ    L + 
Sbjct: 1   MSKEGLIAAKELKRLQ----TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMK 60

Query: 110 VFSTVRSEPWYKTDLSLYADLVSALNKMGGMGEDIDRLIEEMDGGDGVINWEDKKGLSRL 169
           ++  VR E WY+ D+  Y D++  L +   + ++  ++ E++   + +    D+     L
Sbjct: 61  LYEVVRREIWYRPDMFFYRDMLMMLARNKKV-DETKKVWEDLKKEEVLF---DQHTFGDL 120

Query: 170 VKALINAERRESTVRIYGVMKK 192
           V+  ++ E     +R+YG M++
Sbjct: 121 VRGFLDNELPLEAMRLYGEMRE 134

The following BLAST results are available for this feature:

BLAST of Spo23152.1 vs. NCBI nr
BLAST of Spo23152.1 vs. UniProtKB/TrEMBL
BLAST of Spo23152.1 vs. ExPASy Swiss-Prot
BLAST of Spo23152.1 vs. TAIR (Arabidopsis)

BLAST of Spo23152.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902231913\|gb\|KNA22445.1\|	3.5e-129	100.	hypothetical protein SOVF_0332...	[more]
gi\|731335843\|ref\|XP_010678937.1\|	1.5e-92	78.8	PREDICTED: pentatricopeptide r...	[more]
gi\|359482912\|ref\|XP_003632859.1\|	2.0e-55	58.8	PREDICTED: uncharacterized pro...	[more]
gi\|1009112149\|ref\|XP_015866768.1\|	7.8e-52	55.7	PREDICTED: uncharacterized pro...	[more]
gi\|449448168\|ref\|XP_004141838.1\|	1.0e-51	53.9	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo23152.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RSC3_SPIOL	2.5e-129	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CCY9_BETVU	1.1e-92	78.8	Uncharacterized protein OS=Bet...	[more]
D7U0G1_VITVI	1.4e-55	58.8	Putative uncharacterized prote...	[more]
A0A0A0K6N6_CUCSA	7.1e-52	53.9	Uncharacterized protein OS=Cuc...	[more]
W9R688_9ROSA	4.6e-51	56.7	Uncharacterized protein OS=Mor...	[more]

BLAST of Spo23152.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
PPR89_ARATH	2.2e-6	27.4	Pentatricopeptide repeat-conta...	[more]

BLAST of Spo23152.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT3G27750.1	1.4e-46	49.5	FUNCTIONS IN: molecular_functi...	[more]
AT5G09320.1	4.9e-20	34.1	Vacuolar sorting protein 9 (VP...	[more]
AT1G62350.1	1.2e-7	27.4	Pentatricopeptide repeat (PPR)...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006914	autophagy
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0006397	mRNA processing
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006754	ATP biosynthetic process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0051536	iron-sulfur cluster binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16436	0.71	Barchart \| Table
Spo25304	0.71	Barchart \| Table
Spo25655	0.70	Barchart \| Table
Spo24771	0.70	Barchart \| Table
Spo01224	0.69	Barchart \| Table
Spo27351	0.69	Barchart \| Table
Spo25990	0.67	Barchart \| Table
Spo23921	0.67	Barchart \| Table
Spo02159	0.66	Barchart \| Table
Spo01500	0.66	Barchart \| Table
Spo09445	0.65	Barchart \| Table