Spo18270 (gene) | SpinachBase

Overview


Name	Spo18270
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Nucleic acid-binding, OB-fold-like protein
Location	chr4 : 122710932 .. 122714133 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACCTCACTTACGTTGTAAATTATAATACAATCACTAGTATCTATCTACGTGACACCAATGATGTCTTGGTCTAGTGGTTAAGGCTGAGGGCCTGTGTACAATACCCCTTTTAATATACACGGAGTATTATGGATGACTAATACTCGCCTACTCGGTATTAAATATAGTTTATTTTTTTAATTTTTGAATTTATTAAATATGAAGTAGTTAAGTTTCTATTGTAAAATCATTTCTCCCAAAAAGTTTATTGGAGCAACTCAATCTACAAAAAAAAAAAACGAACAGCAACGCACGTCTTCCCTCTGTTTCTCTCTCATCTAACATCTAACATCTAACGCCCCTTCCGCTTCCGCTTCAATACGGGCCCCCCTTGGTTAAACCTCCCATTTCTGTTTCCTATCATTTCTAGGGTTTCACTCTAAACACTATTTTCTCTCGTCGTCTCCATTTTCTTTTCTAGGGTTAGGGTTTAAGCATTTTCCCCCATTTCTCCCTCCATCTCTCCTCTCGCTTCAAATCCATATCCCATGGCGACAACTCCAGCAACCGCACCCCCTACAACTGCCACGGCGGCCAAGAGAAAGCCGGTGTTTGTAAAGGTTGACCAGCTAAAACCTGGTACTACAGGCCATACATTGACTGTCAAGGTTGTCAGCTGCAAAACAGTTCTAAACAAAGGAAGATCGGCTCCTTCAGCTTCTCTTAACCCTCGCCCTACTCGCATCGCTGAGTGTGTTGTCGGTGATGAGACCGGCGTTATCATCTTTACGGCCCGCAATGAACAAAGTATTCATTTCTGTCTCTAATCCTTTTCATTCTATTGTTTAATTTTTTATCATTTGTTTTGTTTGTATTATGTTGACGATTTGAATAATGTTATGAAATTTAGAATGTAGAAATTGCAAATTTGTGTGCGAGAACAACTTTTCTGGCGGTTTTATGGACTCATTTGTTGTAGATTTATGTTCTTGTCATTCGACTTCGTAATTACCCTTTTAGACCGAAATGTTCAGTGTCGATTGCTTTACTAATTGTGCTCTTATTCTCTAATTTCTTATTTGGTAGTGGTTTTGGAAGCAGATGAATTTCTATTCTATTTTGATTGATTGATCTTATATTGAATCGGTGTGGCTTCGAAATTCCCCTTTATAGACATTTTCGTTTTGCCCCATCAGTTGGAGGGACTTTTCTTCATTTCTGAAGAGTTGAGGAAAATTAAGGAATGAGTGGCATGGGAGTTGTCCTCTCCCAGAGCGTGGTCAGGACTTTTTCTCTGCTGGTGTGCGTCTAGTGGCCATACTGTTTTTTTTTCTTCTTATATATTTGCAAAATATGCTAATAACAATTGACAAACAAAATATAACAAAAAAAAGTTTATGTTATGCCAATTGACCTTGCCTAATTTTCTCCAGTTCTTTTGCGGGTAATTGTTATATTTTTTTCCCATACTAGTTATTTGCCTACCATTCCTAATTTCTCGAAGGAACAGATGCGTCAAGTTTAATACAAGGTCACTAATATCATGTTGCATACCTCAGTATGTTTTTCGGCTGTGGTTGGCTGGTTGCATCCCATGTCTATAAATCCTTTGTCAGTAAGCCTAGCTAGCAGAGAATAGAGATGAACTACTGGTGATATGTAGGCATGTAGCTAGGTCTGTTGAAGTTGTCCATACTTGATTTCCCTATCTGAATTACTTATATTCAATCAACAGTTCAACACTAAAACTATATCGACTTCAGATTATCACGAAGATCATCTGAATCAATTCAGCCTCTGTTTGCCATCCCTGTTCCATAGAGCTGGAAACATGTATTAGGACTGGACTGGTGTTCCATTTCAAGAATGGAGGACTGTGAATTCATGTGGAGATGATATGACAGTATGAATGATGTTATTACCATATAATAGGTCGAGAAATATGATTTGTTGGACATATAGTTCCAGAATATATGTACAAATGATGCCTAGCTGCTCCGGTGAAGTGTAAGGACAATTATTCGGTTTAATTTAGCCAAGTAACAAAGTGGTTATACATAAGCACGCAACAGTATGGAATGATTGATATGATTCCTAGCTTCTCTAGTTTAAGTTAAGGATTGTAATTAGGTGTAGCCTAGCTAACTAATAAAGTTGTTTTACGAAAATGTGGAACAGCATTATGTATGAACACACTACTATGGTCATTTTTATGATGACTGTTAAGATTTTAGTGGTCGAAAATGACTAAGTATAAGGATGAACACCTGTAGTTTTTATTTTAAGACCATTTTCAACCACTAGATTTTCGTGACCATTTTACTTTGAAGTGTGCAAGTATATATTTTTTTCTAGACTATTTTGGATCTTCATCTATTTCATTCATATCAGATGCCAGGTAATTTGATTAAAATGCTGAATCACTCTTTTCATTTATATGTTCCATTAGTGGAAAAATAGATTATTTTTGTTGCATTCTTGTGGATTAGTCTGAATTACTTTTTGCTCTTGTAGTCGACCTCATGGCGGCTGATGCTACAGTGATTCTGCGCAATGCAAAGATCGACATGTTCAAAGGTTCAATGAGGCTTGCTGTCGACAAGTGGGGTCGTGTTGAGGTCACTGAACCTGCAAGCTTTCAGGTTAAGGAGGACAACAATCTCTCCCTCGTGGAATATGAGTTGGTGAATGTTGTCGAAGAATGATGAGAAGTTGTTAGGTTGGAAGTGGGATTTATTTCTATTTTTTTGGGTTTGTGAATTAAAATTGTTATTGCTTTGCAACTTTCACGAGTTTCAACTGCAAATCATCATTAAAGAAGCATTGCCTTTGTGTATTCGTAGAATAGCTTTTTGCTCCTGTTTTCCGTTTACCTTCCAAGTGCAGGTTTTTCTCTTGATCAACCGGTAATCTAAGCTTTACTATTCTAATTGTATTTTTGATATACCCAAACACTTTTATCATGTAGCTTTTGTTACTTTACATGGTTGTCTATCCTTAGGAAACTTGTCTGGATCATGCTATCATATTGTTGCATCCAATATTTGTATTTAACTATAGATGCTGCCTTGAGTATCTTGACAATCATATGGGGTATTCAAGAAATTCTCTTTATAGAGGAGGATATGTAACTCTTTATGGTCAACCAAGTTTTGTTTGTGATGCCCAACAAGTATAAATTTATTGGCCACATTAGTTATGAAGTTTACTTTAATTGCCT

mRNA sequence

ACAACCTCACTTACGTTGTAAATTATAATACAATCACTAGTATCTATCTACGTGACACCAATGATGTCTTGGTCTAGTGGTTAAGGCTGAGGGCCTGTGTACAATACCCCTTTTAATATACACGGAGTATTATGGATGACTAATACTCGCCTACTCGGTATTAAATATAGTTTATTTTTTTAATTTTTGAATTTATTAAATATGAAGTAGTTAAGTTTCTATTGTAAAATCATTTCTCCCAAAAAGTTTATTGGAGCAACTCAATCTACAAAAAAAAAAAACGAACAGCAACGCACGTCTTCCCTCTGTTTCTCTCTCATCTAACATCTAACATCTAACGCCCCTTCCGCTTCCGCTTCAATACGGGCCCCCCTTGGTTAAACCTCCCATTTCTGTTTCCTATCATTTCTAGGGTTTCACTCTAAACACTATTTTCTCTCGTCGTCTCCATTTTCTTTTCTAGGGTTAGGGTTTAAGCATTTTCCCCCATTTCTCCCTCCATCTCTCCTCTCGCTTCAAATCCATATCCCATGGCGACAACTCCAGCAACCGCACCCCCTACAACTGCCACGGCGGCCAAGAGAAAGCCGGTGTTTGTAAAGGTTGACCAGCTAAAACCTGGTACTACAGGCCATACATTGACTGTCAAGGTTGTCAGCTGCAAAACAGTTCTAAACAAAGGAAGATCGGCTCCTTCAGCTTCTCTTAACCCTCGCCCTACTCGCATCGCTGAGTGTGTTGTCGGTGATGAGACCGGCGTTATCATCTTTACGGCCCGCAATGAACAAATCGACCTCATGGCGGCTGATGCTACAGTGATTCTGCGCAATGCAAAGATCGACATGTTCAAAGGTTCAATGAGGCTTGCTGTCGACAAGTGGGGTCGTGTTGAGGTCACTGAACCTGCAAGCTTTCAGGTTAAGGAGGACAACAATCTCTCCCTCGTGGAATATGAGTTGGTGAATGTTGTCGAAGAATGATGAGAAGTTGTTAGGTTGGAAGTGGGATTTATTTCTATTTTTTTGGGTTTGTGAATTAAAATTGTTATTGCTTTGCAACTTTCACGAGTTTCAACTGCAAATCATCATTAAAGAAGCATTGCCTTTGTGTATTCGTAGAATAGCTTTTTGCTCCTGTTTTCCGTTTACCTTCCAAGTGCAGGTTTTTCTCTTGATCAACCGGTAATCTAAGCTTTACTATTCTAATTGTATTTTTGATATACCCAAACACTTTTATCATGTAGCTTTTGTTACTTTACATGGTTGTCTATCCTTAGGAAACTTGTCTGGATCATGCTATCATATTGTTGCATCCAATATTTGTATTTAACTATAGATGCTGCCTTGAGTATCTTGACAATCATATGGGGTATTCAAGAAATTCTCTTTATAGAGGAGGATATGTAACTCTTTATGGTCAACCAAGTTTTGTTTGTGATGCCCAACAAGTATAAATTTATTGGCCACATTAGTTATGAAGTTTACTTTAATTGCCT

Coding sequence (CDS)

ATGGCGACAACTCCAGCAACCGCACCCCCTACAACTGCCACGGCGGCCAAGAGAAAGCCGGTGTTTGTAAAGGTTGACCAGCTAAAACCTGGTACTACAGGCCATACATTGACTGTCAAGGTTGTCAGCTGCAAAACAGTTCTAAACAAAGGAAGATCGGCTCCTTCAGCTTCTCTTAACCCTCGCCCTACTCGCATCGCTGAGTGTGTTGTCGGTGATGAGACCGGCGTTATCATCTTTACGGCCCGCAATGAACAAATCGACCTCATGGCGGCTGATGCTACAGTGATTCTGCGCAATGCAAAGATCGACATGTTCAAAGGTTCAATGAGGCTTGCTGTCGACAAGTGGGGTCGTGTTGAGGTCACTGAACCTGCAAGCTTTCAGGTTAAGGAGGACAACAATCTCTCCCTCGTGGAATATGAGTTGGTGAATGTTGTCGAAGAATGA

Protein sequence

MATTPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNPRPTRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFQVKEDNNLSLVEYELVNVVEE

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo18270.1	Spo18270.1	mRNA

Homology

[Close]

BLAST of Spo18270.1 vs. NCBI nr
Match: gi|902196878|gb|KNA13252.1| (hypothetical protein SOVF_118600 [Spinacia oleracea])

HSP 1 Score: 285.4 bits (729), Expect = 5.600e-74
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

		  
Query: 1   MATTPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLN 60
           MATTPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLN
Sbjct: 1   MATTPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLN 60

Query: 61  PRPTRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRV 120
           PRPTRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRV
Sbjct: 61  PRPTRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRV 120

Query: 121 EVTEPASFQVKEDNNLSLVEYELVNVVEE 150
           EVTEPASFQVKEDNNLSLVEYELVNVVEE
Sbjct: 121 EVTEPASFQVKEDNNLSLVEYELVNVVEE 149

[Close]

BLAST of Spo18270.1 vs. NCBI nr
Match: gi|731371557|ref|XP_010666076.1| (PREDICTED: uncharacterized protein At4g28440-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 254.2 bits (648), Expect = 1.400e-64
Identity = 133/144 (92.36%), Postives = 135/144 (93.75%), Query Frame = 1

		  
Query: 6   ATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNPRPTR 65
           AT   TT T AKRKPVFVKVDQLKPGT+GHTLTVKVVS KTVLNKGRSAPSASLNPRPTR
Sbjct: 28  ATTTTTTTTTAKRKPVFVKVDQLKPGTSGHTLTVKVVSSKTVLNKGRSAPSASLNPRPTR 87

Query: 66  IAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEP 125
           IAECVVGDETGVI+FTARNEQIDLM  DATVILRNAKIDMFK SMRLAVDKWGRVEVTEP
Sbjct: 88  IAECVVGDETGVIVFTARNEQIDLMKPDATVILRNAKIDMFKSSMRLAVDKWGRVEVTEP 147

Query: 126 ASFQVKEDNNLSLVEYELVNVVEE 150
           ASFQVKEDNNLSLVEYELVNVVEE
Sbjct: 148 ASFQVKEDNNLSLVEYELVNVVEE 171

[Close]

BLAST of Spo18270.1 vs. NCBI nr
Match: gi|672183270|ref|XP_008811907.1| (PREDICTED: uncharacterized protein At4g28440-like [Phoenix dactylifera])

HSP 1 Score: 221.1 bits (562), Expect = 1.300e-54
Identity = 112/134 (83.58%), Postives = 122/134 (91.04%), Query Frame = 1

		  
Query: 16  AKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNPRPTRIAECVVGDET 75
           AKRKPVF KVDQLKPGT+GHTLT KV+S KTVLNKGR+A   S N RPTRIAEC++GDET
Sbjct: 14  AKRKPVFTKVDQLKPGTSGHTLTAKVLSSKTVLNKGRAA---SANLRPTRIAECLIGDET 73

Query: 76  GVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFQVKEDNN 135
           G+I+FTARNEQ+DLM  DATVILRNAKIDMFKGSMRLAVDKWGR+EV EPA+F VKEDNN
Sbjct: 74  GIIVFTARNEQVDLMKPDATVILRNAKIDMFKGSMRLAVDKWGRIEVAEPANFTVKEDNN 133

Query: 136 LSLVEYELVNVVEE 150
           LSLVEYELVNVVEE
Sbjct: 134 LSLVEYELVNVVEE 144

[Close]

BLAST of Spo18270.1 vs. NCBI nr
Match: gi|514782021|ref|XP_004969987.1| (PREDICTED: uncharacterized protein At4g28440-like [Setaria italica])

HSP 1 Score: 216.9 bits (551), Expect = 2.500e-53
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = 1

		  
Query: 15  AAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGR-SAPSASLNPRPTRIAECVVGD 74
           AAKRKPVFVKVDQLKPGTTGHTL  KV+S KTVL KGR  AP+A    RPTRIAEC++GD
Sbjct: 5   AAKRKPVFVKVDQLKPGTTGHTLVAKVLSSKTVLQKGRPGAPAAGPAARPTRIAECLIGD 64

Query: 75  ETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFQVKED 134
           ETG I+FTARNEQ+DL+  ++TVI+RNAKIDMFKGSMRLAVDKWGR+EVTEPASF VKED
Sbjct: 65  ETGCILFTARNEQVDLLKPESTVIIRNAKIDMFKGSMRLAVDKWGRIEVTEPASFNVKED 124

Query: 135 NNLSLVEYELVNVVEE 150
           NNLSLVEYELVNV EE
Sbjct: 125 NNLSLVEYELVNVAEE 140

[Close]

BLAST of Spo18270.1 vs. NCBI nr
Match: gi|218189071|gb|EEC71498.1| (hypothetical protein OsI_03774 [Oryza sativa Indica Group])

HSP 1 Score: 216.5 bits (550), Expect = 3.200e-53
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = 1

		  
Query: 13  ATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNP--RPTRIAECV 72
           A AAKRKPVFVKVDQLKPGT GHTL  KV+S KTV+ KGR+A  A   P  RPTRIAEC+
Sbjct: 3   AAAAKRKPVFVKVDQLKPGTGGHTLVAKVLSSKTVVQKGRAAAGAGAGPAARPTRIAECL 62

Query: 73  VGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFQV 132
           +GDETG I+FTARNEQ+DLM AD+TVI+RNAKIDMFKGSMRLAVDKWGR+EVTEPASF V
Sbjct: 63  IGDETGCILFTARNEQVDLMKADSTVIIRNAKIDMFKGSMRLAVDKWGRIEVTEPASFNV 122

Query: 133 KEDNNLSLVEYELVNV 147
           KEDNNLSLVEYELVNV
Sbjct: 123 KEDNNLSLVEYELVNV 138

[Close]

BLAST of Spo18270.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R378_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118600 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 3.900e-74
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

		  
Query: 1   MATTPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLN 60
           MATTPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLN
Sbjct: 1   MATTPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLN 60

Query: 61  PRPTRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRV 120
           PRPTRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRV
Sbjct: 61  PRPTRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRV 120

Query: 121 EVTEPASFQVKEDNNLSLVEYELVNVVEE 150
           EVTEPASFQVKEDNNLSLVEYELVNVVEE
Sbjct: 121 EVTEPASFQVKEDNNLSLVEYELVNVVEE 149

[Close]

BLAST of Spo18270.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B944_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g225770 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.700e-65
Identity = 133/144 (92.36%), Postives = 135/144 (93.75%), Query Frame = 1

		  
Query: 6   ATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNPRPTR 65
           AT   TT T AKRKPVFVKVDQLKPGT+GHTLTVKVVS KTVLNKGRSAPSASLNPRPTR
Sbjct: 28  ATTTTTTTTTAKRKPVFVKVDQLKPGTSGHTLTVKVVSSKTVLNKGRSAPSASLNPRPTR 87

Query: 66  IAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEP 125
           IAECVVGDETGVI+FTARNEQIDLM  DATVILRNAKIDMFK SMRLAVDKWGRVEVTEP
Sbjct: 88  IAECVVGDETGVIVFTARNEQIDLMKPDATVILRNAKIDMFKSSMRLAVDKWGRVEVTEP 147

Query: 126 ASFQVKEDNNLSLVEYELVNVVEE 150
           ASFQVKEDNNLSLVEYELVNVVEE
Sbjct: 148 ASFQVKEDNNLSLVEYELVNVVEE 171

[Close]

BLAST of Spo18270.1 vs. UniProtKB/TrEMBL
Match: K3XN15_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_003288mg PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.700e-53
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = 1

		  
Query: 15  AAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGR-SAPSASLNPRPTRIAECVVGD 74
           AAKRKPVFVKVDQLKPGTTGHTL  KV+S KTVL KGR  AP+A    RPTRIAEC++GD
Sbjct: 5   AAKRKPVFVKVDQLKPGTTGHTLVAKVLSSKTVLQKGRPGAPAAGPAARPTRIAECLIGD 64

Query: 75  ETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFQVKED 134
           ETG I+FTARNEQ+DL+  ++TVI+RNAKIDMFKGSMRLAVDKWGR+EVTEPASF VKED
Sbjct: 65  ETGCILFTARNEQVDLLKPESTVIIRNAKIDMFKGSMRLAVDKWGRIEVTEPASFNVKED 124

Query: 135 NNLSLVEYELVNVVEE 150
           NNLSLVEYELVNV EE
Sbjct: 125 NNLSLVEYELVNVAEE 140

[Close]

BLAST of Spo18270.1 vs. UniProtKB/TrEMBL
Match: Q5JML8_ORYSJ (DNA-binding protein-related-like OS=Oryza sativa subsp. japonica GN=Os01g0754100 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.200e-53
Identity = 109/135 (80.74%), Postives = 119/135 (88.15%), Query Frame = 1

		  
Query: 12  TATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNPRPTRIAECVV 71
            A AAKRKPVFVKVDQLKPGT GHTL  KV+S KTV+ KGR+A  A    RPTRIAEC++
Sbjct: 4   AAAAAKRKPVFVKVDQLKPGTGGHTLVAKVLSSKTVVQKGRAAAGAGPAARPTRIAECLI 63

Query: 72  GDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFQVK 131
           GDETG I+FTARNEQ+DLM AD+TVI+RNAKIDMFKGSMRLAVDKWGR+EVTEPASF VK
Sbjct: 64  GDETGCILFTARNEQVDLMKADSTVIIRNAKIDMFKGSMRLAVDKWGRIEVTEPASFNVK 123

Query: 132 EDNNLSLVEYELVNV 147
           EDNNLSLVEYELVNV
Sbjct: 124 EDNNLSLVEYELVNV 138

[Close]

BLAST of Spo18270.1 vs. UniProtKB/TrEMBL
Match: B8A9R0_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03774 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.200e-53
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = 1

		  
Query: 13  ATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNP--RPTRIAECV 72
           A AAKRKPVFVKVDQLKPGT GHTL  KV+S KTV+ KGR+A  A   P  RPTRIAEC+
Sbjct: 3   AAAAKRKPVFVKVDQLKPGTGGHTLVAKVLSSKTVVQKGRAAAGAGAGPAARPTRIAECL 62

Query: 73  VGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFQV 132
           +GDETG I+FTARNEQ+DLM AD+TVI+RNAKIDMFKGSMRLAVDKWGR+EVTEPASF V
Sbjct: 63  IGDETGCILFTARNEQVDLMKADSTVIIRNAKIDMFKGSMRLAVDKWGRIEVTEPASFNV 122

Query: 133 KEDNNLSLVEYELVNV 147
           KEDNNLSLVEYELVNV
Sbjct: 123 KEDNNLSLVEYELVNV 138

[Close]

BLAST of Spo18270.1 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.000e-46
Identity = 99/149 (66.44%), Postives = 115/149 (77.18%), Query Frame = 1

		  
Query: 1   MATTPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVL---NKGRSAPSA 60
           MATT   A  T  +  KRKPVFVKV+QLKPGTTGHTLTVKV+    V+    K R A S 
Sbjct: 1   MATTGTAAVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSL 60

Query: 61  SLNPRPTRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKW 120
           S   +P+RI EC++GDETG I+FTARN+Q+DLM   ATVILRN++IDMFKG+MRL VDKW
Sbjct: 61  SRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKW 120

Query: 121 GRVEVTEPASFQVKEDNNLSLVEYELVNV 147
           GR+E T  ASF VKEDNNLSLVEYEL+NV
Sbjct: 121 GRIEATGAASFTVKEDNNLSLVEYELINV 149

[Close]

BLAST of Spo18270.1 vs. TAIR (Arabidopsis)
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 189.1 bits (479), Expect = 1.900e-48
Identity = 102/146 (69.86%), Postives = 114/146 (78.08%), Query Frame = 1

		  
Query: 4   TPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNPRP 63
           T    PP      K+KPVFVKVDQLKPGT+GHTLTVKVV   +V  K  +A S+ L  RP
Sbjct: 39  TSQNQPPQHTPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHL--RP 98

Query: 64  TRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVT 123
            RI+EC+VGDET  I+FTARN+Q++LM   ATV LRNAKIDMFKGSMRLAVDKWGR+E T
Sbjct: 99  ARISECLVGDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEAT 158

Query: 124 EPASFQVKEDNNLSLVEYELVNVVEE 150
           EPA   VKEDNNLSLVEYELVNVVEE
Sbjct: 159 EPADITVKEDNNLSLVEYELVNVVEE 182

[Close]

BLAST of Spo18270.1 vs. TAIR (Arabidopsis)
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 188.0 bits (476), Expect = 4.300e-48
Identity = 96/135 (71.11%), Postives = 112/135 (82.96%), Query Frame = 1

		  
Query: 15  AAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRS-APSASLNPRPTRIAECVVGD 74
           A  +KP F KVDQL+PGT+GH + VK+VS K VL KGR+  P A    R  RI+EC+VGD
Sbjct: 7   AGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQA----RQLRISECIVGD 66

Query: 75  ETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPASFQVKED 134
           ETGVI+FTARN+Q+DLM   +TV LRNAKIDM+KGSMRLAVDKWGRVEVTEPASF+VKED
Sbjct: 67  ETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKED 126

Query: 135 NNLSLVEYELVNVVE 149
            N+SL+EYELVNVVE
Sbjct: 127 TNMSLIEYELVNVVE 137

[Close]

BLAST of Spo18270.1 vs. TAIR (Arabidopsis)
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 187.6 bits (475), Expect = 5.700e-48
Identity = 99/149 (66.44%), Postives = 115/149 (77.18%), Query Frame = 1

		  
Query: 1   MATTPATAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVL---NKGRSAPSA 60
           MATT   A  T  +  KRKPVFVKV+QLKPGTTGHTLTVKV+    V+    K R A S 
Sbjct: 1   MATTGTAAVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSL 60

Query: 61  SLNPRPTRIAECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKW 120
           S   +P+RI EC++GDETG I+FTARN+Q+DLM   ATVILRN++IDMFKG+MRL VDKW
Sbjct: 61  SRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKW 120

Query: 121 GRVEVTEPASFQVKEDNNLSLVEYELVNV 147
           GR+E T  ASF VKEDNNLSLVEYEL+NV
Sbjct: 121 GRIEATGAASFTVKEDNNLSLVEYELINV 149

[Close]

BLAST of Spo18270.1 vs. TAIR (Arabidopsis)
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 169.9 bits (429), Expect = 1.200e-42
Identity = 87/135 (64.44%), Postives = 107/135 (79.26%), Query Frame = 1

		  
Query: 13  ATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNPRPTRIAECVVG 72
           AT+A RKPVF KV++L+PGT GH+L VKVV+ K V+ +G   P    + R  RIAEC+VG
Sbjct: 18  ATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQS-RQMRIAECLVG 77

Query: 73  DETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVT-EPASFQVK 132
           DETG+IIFTARN+Q+D+M   + V LRNAKIDM+KGSMRLAVD+WGRVEV  EP    VK
Sbjct: 78  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 137

Query: 133 EDNNLSLVEYELVNV 147
           +DNNLSL+EYELV+V
Sbjct: 138 DDNNLSLIEYELVSV 151

[Close]

BLAST of Spo18270.1 vs. TAIR (Arabidopsis)
Match: AT1G03810.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 164.5 bits (415), Expect = 5.100e-41
Identity = 84/138 (60.87%), Postives = 102/138 (73.91%), Query Frame = 1

		  
Query: 7   TAPPTTATAAKRKPVFVKVDQLKPGTTGHTLTVKVVSCKTVLNKGRSAPSASLNPRPTRI 66
           TA     TA KRKPVFVKVDQLKPGT+GHTL VKV+    V    R +          RI
Sbjct: 4   TANTNATTAPKRKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRI 63

Query: 67  AECVVGDETGVIIFTARNEQIDLMAADATVILRNAKIDMFKGSMRLAVDKWGRVEVTEPA 126
           AEC++GD+TG I+FTARN+Q+DLM   ATVILRNAKID+FK +MR+AVD+WGR+E+T P 
Sbjct: 64  AECLIGDDTGCILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPV 123

Query: 127 SFQVKEDNNLSLVEYELV 145
           SF+V   NNLSLVEYE++
Sbjct: 124 SFEVNRANNLSLVEYEVI 141

The following BLAST results are available for this feature:

BLAST of Spo18270.1 vs. NCBI nr
BLAST of Spo18270.1 vs. UniProtKB/TrEMBL
BLAST of Spo18270.1 vs. ExPASy Swiss-Prot
BLAST of Spo18270.1 vs. TAIR (Arabidopsis)

BLAST of Spo18270.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902196878\|gb\|KNA13252.1\|	5.6e-74	100.	hypothetical protein SOVF_1186...	[more]
gi\|731371557\|ref\|XP_010666076.1\|	1.4e-64	92.3	PREDICTED: uncharacterized pro...	[more]
gi\|672183270\|ref\|XP_008811907.1\|	1.3e-54	83.5	PREDICTED: uncharacterized pro...	[more]
gi\|514782021\|ref\|XP_004969987.1\|	2.5e-53	80.8	PREDICTED: uncharacterized pro...	[more]
gi\|218189071\|gb\|EEC71498.1\|	3.2e-53	80.8	hypothetical protein OsI_03774...	[more]

BLAST of Spo18270.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9R378_SPIOL	3.9e-74	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B944_BETVU	9.7e-65	92.3	Uncharacterized protein OS=Bet...	[more]
K3XN15_SETIT	1.7e-53	80.8	Uncharacterized protein OS=Set...	[more]
Q5JML8_ORYSJ	2.2e-53	80.7	DNA-binding protein-related-li...	[more]
B8A9R0_ORYSI	2.2e-53	80.8	Putative uncharacterized prote...	[more]

BLAST of Spo18270.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
Y4844_ARATH	1.0e-46	66.4	Uncharacterized protein At4g28...	[more]

BLAST of Spo18270.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT2G33845.1	1.9e-48	69.8	Nucleic acid-binding, OB-fold-...	[more]
AT1G23750.1	4.3e-48	71.1	Nucleic acid-binding, OB-fold-...	[more]
AT4G28440.1	5.7e-48	66.4	Nucleic acid-binding, OB-fold-...	[more]
AT1G10590.3	1.2e-42	64.4	Nucleic acid-binding, OB-fold-...	[more]
AT1G03810.1	5.1e-41	60.8	Nucleic acid-binding, OB-fold-...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140		coord: 21..144 score: 3.2
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 14..146 score: 7.54
None	No IPR available	PANTHER	PTHR31472	FAMILY NOT NAMED	coord: 2..149 score: 7.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0006412	translation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
cellular_component	GO:0009536	plastid
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0000906	6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0046914	transition metal ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16134	0.79	Barchart \| Table
Spo24189	0.74	Barchart \| Table
Spo25742	0.73	Barchart \| Table
Spo02751	0.73	Barchart \| Table
Spo09321	0.72	Barchart \| Table
Spo01059	0.72	Barchart \| Table
Spo07806	0.72	Barchart \| Table
Spo19407	0.71	Barchart \| Table
Spo22784	0.71	Barchart \| Table
Spo11000	0.70	Barchart \| Table
Spo16470	0.70	Barchart \| Table
Spo17769	0.68	Barchart \| Table
Spo21757	0.68	Barchart \| Table
Spo26489	0.67	Barchart \| Table
Spo02663	0.67	Barchart \| Table
Spo16636	0.67	Barchart \| Table
Spo16184	0.66	Barchart \| Table
Spo16436	0.65	Barchart \| Table
Spo11336	0.65	Barchart \| Table
Spo07549	0.65	Barchart \| Table
Spo05078	0.65	Barchart \| Table