Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTCAACAAAGCCCAATTAAAAACCCGAAAAAAGCACAAACAGCACAAAAGTGGGTCGGGTACTCGGGTTGCAAGGATTAACAAAATCAACACTCCAAAACCCTAATCAATTGCAAGGTCTGCAACCAAACTTCATCTTTTCTCTCTCTAAAAATTTCTGAAGCTTTTTTCACAGCACAAAAATGGCGGGAGGTAAAATCAGGAAAGAGAAACAGAAAGGGAGCAACCATTTTCAAGGAGGAATTCCCTTCCACAAATCAAAGGGACAACATATTCTGAAAAATCCAATGTTGGTTGAATCAATTGTTCAGAAAGCTGGGATTAAACCTACTGATATAATTCTCGAAATTGGTCCGGGTACTGGTAATCTTACTAAGAAGCTTCTAGAAGCTGGGAAGAAAGTTATTGCTGTTGAATTGGATCCTCGTATGGTTCTGGAACTTAAACGCCGTTTTCAAGGCACCCCTTTCTCCACTCGTTTAGAGGTTTGAAATTTTTACTTTTACTTTTTAATTTTAATTATTTTTGAATTTTGTTGAAAGATTGAGTGTTGTGACTATTTGGTTTTGAATTGATTGGGTTTTAGCTTAAATTGATGGTTGTGATTTACATCAGTTCTTTCACTTTCTTTGTGATTGAAATACTAATTAATAATCTCACTCTTTTGTTATATAATTTCGCAATAATTTGATCAAGCATTGATGTTGATGATAGTATCTATTTTTATTTAATTATTTTTGAATTTTGTTGAAAGATTGAGTATTTTGACTATTTGGTTTTGAATTGATTGGGTTTTAGCTAAATTGATGGTTGTGATTTACATCAGTTTCACTTTCTTTGTGATTGAAACACTAATTAATAATCACTCTTTTGTTATATAAGTCCGCAATACTTTGATCAAGTAGTGATGTTGATAATAGTATCTAATTTTATTTATAATAACTTCCGATTTACAATTATTTGCTACTTGTGCTGTGGATATTCTGCTAGTTTTCTTGTGTGTTAGACAAATTTATGATGTTTTCTCGCAAAATTAGCAATTTAAACATCATTGTAACACAACAAGGAACCACCAAATGCAAACACTAATTAATAATCACTCTTTTGTTATATAATTCTGCAATACTTTGATCAAGTAGTGATGTTGATGATAGTATCTAATTTTATTTATAATAACTTCCGATTAACCATTATTTGCTACTTGTGCTGTCTATTTTCTGCTAATTTTCTTGTCTGTTCGACAAATTTATGAAGTTTTCTCGCGAGATTAGCAATTTAAACATCATTGTAACATAAGAACTACCAAATGCAAACAGTGAAACAGTAGCTACAAGGTTTTTATGATACGGATTTAGGATAAACATCACCACCCAAAATTCGAGCCTTTAATAAAGACGTAATAATATGAAATATAGACTTGTTATTGTGAATTTGTGATATCAAGCACCAAATGCTTGTCAATTCAGCATAAAAGTAGGTCACAGATCCTAACCGACTGTTCATCAATTCGTTATTAGAGGTACTAGGGTCATTCAGTTTGCAGGTATTACTAACTAAACAGTAAACACTGATTATACCTTAAACTTAGCTGAACATCCAAATTATCCAATTAAAACAAACAATTTTGAATTTCCAAGATGATTCAATTTTGAGTTGAATAATCATAAACACCTTTGAACTATAGGATTCTCATATTTGCAAGGAGCATTGTTCCTGGTATGTGGAGCCTCTCAGATGAACTGTATCTAGGATTAAACTTAAGTATCAAGTTCAAGAGTAAATTTGGTGCATTGACAGATATAATGTGATTGTTAATTTGTTATTAGTTAGTTAATAGCTTCTGTTGTTTGATAATTATTGAGTATTTCTTTTGAGTTATCACTCTCAAGGGCTATATGAGATGTTCTTTCTAATTTCATATTCATGCAATCCAAATATCTTTTGACTGCTGAAGGTGTCATTAGCATATTGGATGACTGAGGTTGATCAATCAGATATCATGAAAGGTGAAAAGATTTGACATCTACATCCTCTCCTACCTGTAGAATGTTTGTTGAATAATTGGATTTGTGGTGATTTGTTTTATAATTGAGGGTTTTTTTTTAAAAAAAAGTTGTTCTAGCTGCAATGGAATTAGTTGAATAAACGAGGGTAATGAGAGTTCTGTAACGCTAATTTGATTTCAAAATTGTTTTGACTTGGGCCTGTTTGCTGTCGTACCGTCATCGTTAGGTATTGGATTTTGAGTTTAGTTATACCTATGAGGTGTAATTGTAGGAAATACTGCCCTATATATAATTATTTGATTATGGTACTATTATTGTAGTTGTAGATGCGTCAATACCGGGAGTGATATAATCATAAATTGAACAATTATGCACTTTTTTTTTGGACTTTGTTAGTTTGTGAGGTAGTTTTAGAGGTTTTCAGTTCTGTGGTGAGTATTAGTCGCTTTTTGTTAGTTTTAGGTAATTTTGAGTACAAGAGTTAACAAGGAATGAATTGGGATTGCAATAAAAGGCTTTGCAGCCTTGCAGCGTTAGTTCCTCGTTGTTCATTATTTCTGAATTTGTGTTGTTTCTTTGTGTATGTAGCCCAAGGAATTCTTTTATGTTGGATTTTGAAGTGAAAAATGTTGAACTTTTTGTTAGAGATTGGATTGTTAACAAGACTATGGTCTAGTCTAGTCTTCAGAATCTTGTTGTGCTTGATATTTTGGCTCAGTTATGCATCATCTTGATCTAGGCTCCGTTCAATTCAACTTATTTTCACTAAACTTATATTATCTGAACTTATATTATTTGAACTTATTTTGTCTGAAATAAGTCAAAATATGTCGAACTGAACAGAGGCACATAGCCCTATTATATCTTTCCTGACATTCTTCATCAACAGGTAATCCAAGGAGATGTTCTAAAGTGTGAACTTCCATTTTTCGATATCTGCGTTGCCAACATCCCATACCAAATCTCCTCCCCACTCGTGTTCAAGTTATTAGACATCAACCAAAAGCAAAACTTCAGATGTGCAATTATAATGTTCCAAAGAGAATTCGCAATGAGGCTTGTTGCTCAACCGGGTGATAAGCTTTACTGCCGTCTCGCAGTCAACACTCAGCTCCTTGCTCGGGTTTTCCACCTCCTCAAAGTCGGGAAGAACAATTTCCGGCCCCCACCTAAGGTCGACTCCTCAGTCGTCCGTATCGAACCTAGAAGGCCACTTCCTATCCCAGTTGGCAAACTTAAAGAATGGAACGGGCTTCTGTCACTGTGTTTCAGCCGAAAGAACAAAACGCTCGGGTCAATATTTGGTCAAAAGAAGGTTCTAGAAATGCTGGAAAAGAATTACAGGACTTTAGAGTCTTTAGGGCAGTTAAAGGATAATGATTCAGAGATTATTGATATGTCTATCTTAAATGAGGATGTAAGTATGGATGTTGTTGAGAATGGAAAAGCTGATGATGAAGAAGATGATCAAATGGAGGTTGAAGAAGAAGGTGAAGATGATGCAGATTCTGATAATAATGAGATGCAAATAAATGATTCTGGGTTTAAAGGTAAGGTGATTGGTGTTTTGAAGCAATATGATTATGCAGATAAAAGATCGTCTAAGCTTACACAAAACGAGTTTATACACTTATTATCGGTTTTTAATCAGGCCGGTATTCACTTTACGAGTACTAAATAGGGTTTTAGTAGTAATGTTGTTTAGTTGCTTGTACTAATTAAACACAAGCACCCAATTTTGCTTGCTATGTTGTCATACAGTTTGTTATATCAAGAAACATGAAAAATGTGAGTGGCAAGAGTTTTTTGCATCTGACTATATCTGACAAGTAGTAGAATTTGTTTTGATTTGTGTCTTCATTTTCTTATTTATTAGTTGATCAATTATTTGTGTTCATCTAATTATTTGATGTGTGTTTAAATATGTAATTACATTTTTCTGAACCATAAACAGAGAAATTAGTTAGATGTATTTTTCTGAGAAATGGTTTTCAAAGGTCATGTTTACTTCTTCAT GTCAACAAAGCCCAATTAAAAACCCGAAAAAAGCACAAACAGCACAAAAGTGGGTCGGGTACTCGGGTTGCAAGGATTAACAAAATCAACACTCCAAAACCCTAATCAATTGCAAGGTCTGCAACCAAACTTCATCTTTTCTCTCTCTAAAAATTTCTGAAGCTTTTTTCACAGCACAAAAATGGCGGGAGGTAAAATCAGGAAAGAGAAACAGAAAGGGAGCAACCATTTTCAAGGAGGAATTCCCTTCCACAAATCAAAGGGACAACATATTCTGAAAAATCCAATGTTGGTTGAATCAATTGTTCAGAAAGCTGGGATTAAACCTACTGATATAATTCTCGAAATTGGTCCGGGTACTGGTAATCTTACTAAGAAGCTTCTAGAAGCTGGGAAGAAAGTTATTGCTGTTGAATTGGATCCTCGTATGGTTCTGGAACTTAAACGCCGTTTTCAAGGCACCCCTTTCTCCACTCGTTTAGAGGTAATCCAAGGAGATGTTCTAAAGTGTGAACTTCCATTTTTCGATATCTGCGTTGCCAACATCCCATACCAAATCTCCTCCCCACTCGTGTTCAAGTTATTAGACATCAACCAAAAGCAAAACTTCAGATGTGCAATTATAATGTTCCAAAGAGAATTCGCAATGAGGCTTGTTGCTCAACCGGGTGATAAGCTTTACTGCCGTCTCGCAGTCAACACTCAGCTCCTTGCTCGGGTTTTCCACCTCCTCAAAGTCGGGAAGAACAATTTCCGGCCCCCACCTAAGGTCGACTCCTCAGTCGTCCGTATCGAACCTAGAAGGCCACTTCCTATCCCAGTTGGCAAACTTAAAGAATGGAACGGGCTTCTGTCACTGTGTTTCAGCCGAAAGAACAAAACGCTCGGGTCAATATTTGGTCAAAAGAAGGTTCTAGAAATGCTGGAAAAGAATTACAGGACTTTAGAGTCTTTAGGGCAGTTAAAGGATAATGATTCAGAGATTATTGATATGTCTATCTTAAATGAGGATGTAAGTATGGATGTTGTTGAGAATGGAAAAGCTGATGATGAAGAAGATGATCAAATGGAGGTTGAAGAAGAAGGTGAAGATGATGCAGATTCTGATAATAATGAGATGCAAATAAATGATTCTGGGTTTAAAGGTAAGGTGATTGGTGTTTTGAAGCAATATGATTATGCAGATAAAAGATCGTCTAAGCTTACACAAAACGAGTTTATACACTTATTATCGGTTTTTAATCAGGCCGGTATTCACTTTACGAGTACTAAATAGGGTTTTAGTAGTAATGTTGTTTAGTTGCTTGTACTAATTAAACACAAGCACCCAATTTTGCTTGCTATGTTGTCATACAGTTTGTTATATCAAGAAACATGAAAAATGTGAGTGGCAAGAGTTTTTTGCATCTGACTATATCTGACAAGTAGTAGAATTTGTTTTGATTTGTGTCTTCATTTTCTTATTTATTAGTTGATCAATTATTTGTGTTCATCTAATTATTTGATGTGTGTTTAAATATGTAATTACATTTTTCTGAACCATAAACAGAGAAATTAGTTAGATGTATTTTTCTGAGAAATGGTTTTCAAAGGTCATGTTTACTTCTTCAT ATGGCGGGAGGTAAAATCAGGAAAGAGAAACAGAAAGGGAGCAACCATTTTCAAGGAGGAATTCCCTTCCACAAATCAAAGGGACAACATATTCTGAAAAATCCAATGTTGGTTGAATCAATTGTTCAGAAAGCTGGGATTAAACCTACTGATATAATTCTCGAAATTGGTCCGGGTACTGGTAATCTTACTAAGAAGCTTCTAGAAGCTGGGAAGAAAGTTATTGCTGTTGAATTGGATCCTCGTATGGTTCTGGAACTTAAACGCCGTTTTCAAGGCACCCCTTTCTCCACTCGTTTAGAGGTAATCCAAGGAGATGTTCTAAAGTGTGAACTTCCATTTTTCGATATCTGCGTTGCCAACATCCCATACCAAATCTCCTCCCCACTCGTGTTCAAGTTATTAGACATCAACCAAAAGCAAAACTTCAGATGTGCAATTATAATGTTCCAAAGAGAATTCGCAATGAGGCTTGTTGCTCAACCGGGTGATAAGCTTTACTGCCGTCTCGCAGTCAACACTCAGCTCCTTGCTCGGGTTTTCCACCTCCTCAAAGTCGGGAAGAACAATTTCCGGCCCCCACCTAAGGTCGACTCCTCAGTCGTCCGTATCGAACCTAGAAGGCCACTTCCTATCCCAGTTGGCAAACTTAAAGAATGGAACGGGCTTCTGTCACTGTGTTTCAGCCGAAAGAACAAAACGCTCGGGTCAATATTTGGTCAAAAGAAGGTTCTAGAAATGCTGGAAAAGAATTACAGGACTTTAGAGTCTTTAGGGCAGTTAAAGGATAATGATTCAGAGATTATTGATATGTCTATCTTAAATGAGGATGTAAGTATGGATGTTGTTGAGAATGGAAAAGCTGATGATGAAGAAGATGATCAAATGGAGGTTGAAGAAGAAGGTGAAGATGATGCAGATTCTGATAATAATGAGATGCAAATAAATGATTCTGGGTTTAAAGGTAAGGTGATTGGTGTTTTGAAGCAATATGATTATGCAGATAAAAGATCGTCTAAGCTTACACAAAACGAGTTTATACACTTATTATCGGTTTTTAATCAGGCCGGTATTCACTTTACGAGTACTAAATAG MAGGKIRKEKQKGSNHFQGGIPFHKSKGQHILKNPMLVESIVQKAGIKPTDIILEIGPGTGNLTKKLLEAGKKVIAVELDPRMVLELKRRFQGTPFSTRLEVIQGDVLKCELPFFDICVANIPYQISSPLVFKLLDINQKQNFRCAIIMFQREFAMRLVAQPGDKLYCRLAVNTQLLARVFHLLKVGKNNFRPPPKVDSSVVRIEPRRPLPIPVGKLKEWNGLLSLCFSRKNKTLGSIFGQKKVLEMLEKNYRTLESLGQLKDNDSEIIDMSILNEDVSMDVVENGKADDEEDDQMEVEEEGEDDADSDNNEMQINDSGFKGKVIGVLKQYDYADKRSSKLTQNEFIHLLSVFNQAGIHFTSTK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17619.1 vs. NCBI nr
Match: gi|902240619|gb|KNA26027.1| (hypothetical protein SOVF_000960 [Spinacia oleracea]) HSP 1 Score: 712.6 bits (1838), Expect = 3.500e-202 Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 1
BLAST of Spo17619.1 vs. NCBI nr
Match: gi|731336639|ref|XP_010679368.1| (PREDICTED: probable dimethyladenosine transferase [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 615.1 bits (1585), Expect = 7.600e-173 Identity = 325/377 (86.21%), Postives = 340/377 (90.19%), Query Frame = 1
BLAST of Spo17619.1 vs. NCBI nr
Match: gi|720038497|ref|XP_010268006.1| (PREDICTED: probable dimethyladenosine transferase [Nelumbo nucifera]) HSP 1 Score: 474.9 bits (1221), Expect = 1.200e-130 Identity = 255/368 (69.29%), Postives = 298/368 (80.98%), Query Frame = 1
BLAST of Spo17619.1 vs. NCBI nr
Match: gi|661877984|emb|CDP18245.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 471.5 bits (1212), Expect = 1.400e-129 Identity = 253/368 (68.75%), Postives = 299/368 (81.25%), Query Frame = 1
BLAST of Spo17619.1 vs. NCBI nr
Match: gi|848853955|ref|XP_012845991.1| (PREDICTED: probable dimethyladenosine transferase [Erythranthe guttata]) HSP 1 Score: 471.1 bits (1211), Expect = 1.800e-129 Identity = 253/368 (68.75%), Postives = 298/368 (80.98%), Query Frame = 1
BLAST of Spo17619.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S4G3_SPIOL (rRNA adenine N(6)-methyltransferase OS=Spinacia oleracea GN=SOVF_000960 PE=3 SV=1) HSP 1 Score: 712.6 bits (1838), Expect = 2.400e-202 Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 1
BLAST of Spo17619.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F2Q7_BETVU (rRNA adenine N(6)-methyltransferase OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121720 PE=3 SV=1) HSP 1 Score: 615.1 bits (1585), Expect = 5.300e-173 Identity = 325/377 (86.21%), Postives = 340/377 (90.19%), Query Frame = 1
BLAST of Spo17619.1 vs. UniProtKB/TrEMBL
Match: A0A068VBQ7_COFCA (rRNA adenine N(6)-methyltransferase OS=Coffea canephora GN=GSCOC_T00011807001 PE=3 SV=1) HSP 1 Score: 471.5 bits (1212), Expect = 9.500e-130 Identity = 253/368 (68.75%), Postives = 299/368 (81.25%), Query Frame = 1
BLAST of Spo17619.1 vs. UniProtKB/TrEMBL
Match: A0A022RYL9_ERYGU (rRNA adenine N(6)-methyltransferase OS=Erythranthe guttata GN=MIMGU_mgv1a009179mg PE=3 SV=1) HSP 1 Score: 471.1 bits (1211), Expect = 1.200e-129 Identity = 253/368 (68.75%), Postives = 298/368 (80.98%), Query Frame = 1
BLAST of Spo17619.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LY97_CUCSA (rRNA adenine N(6)-methyltransferase OS=Cucumis sativus GN=Csa_1G679560 PE=3 SV=1) HSP 1 Score: 467.6 bits (1202), Expect = 1.400e-128 Identity = 262/369 (71.00%), Postives = 296/369 (80.22%), Query Frame = 1
BLAST of Spo17619.1 vs. ExPASy Swiss-Prot
Match: DIM1A_ARATH (Ribosomal RNA small subunit methyltransferase OS=Arabidopsis thaliana GN=DIM1A PE=1 SV=1) HSP 1 Score: 453.0 bits (1164), Expect = 3.100e-126 Identity = 249/367 (67.85%), Postives = 293/367 (79.84%), Query Frame = 1
BLAST of Spo17619.1 vs. ExPASy Swiss-Prot
Match: DIM1_BOVIN (Probable dimethyladenosine transferase OS=Bos taurus GN=DIMT1 PE=2 SV=1) HSP 1 Score: 326.2 bits (835), Expect = 4.400e-88 Identity = 158/252 (62.70%), Postives = 202/252 (80.16%), Query Frame = 1
BLAST of Spo17619.1 vs. ExPASy Swiss-Prot
Match: DIM1_MOUSE (Probable dimethyladenosine transferase OS=Mus musculus GN=Dimt1 PE=2 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 1.100e-86 Identity = 158/254 (62.20%), Postives = 201/254 (79.13%), Query Frame = 1
BLAST of Spo17619.1 vs. ExPASy Swiss-Prot
Match: DIM1_HUMAN (Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1 PE=1 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 1.400e-86 Identity = 156/251 (62.15%), Postives = 200/251 (79.68%), Query Frame = 1
BLAST of Spo17619.1 vs. ExPASy Swiss-Prot
Match: DIM1_MACFA (Probable dimethyladenosine transferase OS=Macaca fascicularis GN=DIMT1 PE=2 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 3.200e-86 Identity = 155/251 (61.75%), Postives = 200/251 (79.68%), Query Frame = 1
BLAST of Spo17619.1 vs. TAIR (Arabidopsis)
Match: AT2G47420.1 (Ribosomal RNA adenine dimethylase family protein) HSP 1 Score: 453.0 bits (1164), Expect = 1.800e-127 Identity = 249/367 (67.85%), Postives = 293/367 (79.84%), Query Frame = 1
BLAST of Spo17619.1 vs. TAIR (Arabidopsis)
Match: AT5G66360.2 (Ribosomal RNA adenine dimethylase family protein) HSP 1 Score: 257.3 bits (656), Expect = 1.400e-68 Identity = 154/341 (45.16%), Postives = 209/341 (61.29%), Query Frame = 1
BLAST of Spo17619.1 vs. TAIR (Arabidopsis)
Match: AT1G01860.1 (Ribosomal RNA adenine dimethylase family protein) HSP 1 Score: 104.8 bits (260), Expect = 1.200e-22 Identity = 73/231 (31.60%), Postives = 116/231 (50.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17619.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17619.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17619.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17619.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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