Spo02381 (gene)

Overview
NameSpo02381
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem II reaction center W
Locationchr5 : 2665900 .. 2667437 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCATCACAGCTAGCTCTTCAGCTTCTTTGGTTGCACGTGCTAGTCTCGTGCACAACTCTAGGGTTGGAGTTTCATCTTCACCTATTCTTGGTTTGTCACCTCACCTTAATTACTAGCTTTTTTTTTATTTACTTATTAATTATTATTGAATGAATTGAGTATTGTTTTGTGTTTGCAAATAATATTTGTGCTTATGAATTTGGACTTCTTTGATAATGAGCATCATATTTCACTTTGATTTTTGATCCAACTTGGTTGAAATAATTTCTAATCCTTGGAAATGAATTTGTATTATAGTAGGCCGATGACGTAAATCGATCTCCTAATTATAAGAGGTCGAGGGTTTGATTCTCTCCTAATCACTTTTCAAGTTTTGTTGTTGGATCATGTTGTGGTTTATTTTATATCCAGTCTCGAATCTCGAAGGTTATGTAACATAGATCTTACTTCATGGTATGAGAATATTGAATTTCATGTTCAATTGTTTACACAAGTAACAAGGGTTACCAATATCTAACACAACAACCCAATAACATGGCAATTAGCAACTACAACATGACCTATATTCAAATTGGCCCAAATGCAAAAGGATCCAAATGTAATGTAGTTTGACCTATTTTTCAAAATTTAGTTGTAAGTTTCCTTTGCTATGTGCATTTTTTTTAATTAAAAGATGATGATGATGTAATCAATTGGGAACATACTTATCTTGTAACTTGTCCTTAAACATACATGATGGAGATACTAAACCGAAAAATTCTTGTTTTTATTTTTTTGGTTGTAAATGAGTCATAAAACCATTGAAAAGTTCTTGATGATTTGCTGATCAATATGCATAAATTTCATTAAACCTTGAAAAGAATCTCATGGAATGTTTTTTTTATTTTTTCGCGCAAATGAGCTACAAGGGAAATATAAATTACAAATGGGGATGGGGGTTTAAACCTGATACTTATTATAGACAGACTCTCAGTCTTAACCACTAGAGGTGATCAAAATTCCGGTCTGGCCGGTCCTTAACACACAAAAATCATGCCCAAACCCATAAATTTAGTGCGGTCTTTGTGGACCTGACATCCTTTTGTTGGCCGGGCTCGGATTTTGGTCTAAATACCCAAACCCGTACTTTTTGGGTCGGGTCGGGTAAGCTGGCCGAACTATAATTGATCAGGTCTATTGCAAACTAAACTAAACTAGTACAATATGTTTTTCAGGATTGCCATCAATGACAAAGAGGAGCAAAGTAACATGTTCAATTGAGAACAAGCCATCAACCACAGAGACCACCACCACAACAAACAAGAGCATGGGTGCATCATTGCTAGCCGCCGCTGCGGCCGCAACCATTTCAAACCCAGCAATGGCTCTTGTTGATGAGAGAATGAGCACAGAAGGAACTGGATTACCCTTTGGTTTAAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTCTCATTTGGGCTCTTTACTTTGTCTATGCTTCTGGTCTTGAAGAGGATGAGGAATCTGGATTGTCCCTTTAA

mRNA sequence

ATGGCCACCATCACAGCTAGCTCTTCAGCTTCTTTGGTTGCACGTGCTAGTCTCGTGCACAACTCTAGGGTTGGAGTTTCATCTTCACCTATTCTTGGATTGCCATCAATGACAAAGAGGAGCAAAGTAACATGTTCAATTGAGAACAAGCCATCAACCACAGAGACCACCACCACAACAAACAAGAGCATGGGTGCATCATTGCTAGCCGCCGCTGCGGCCGCAACCATTTCAAACCCAGCAATGGCTCTTGTTGATGAGAGAATGAGCACAGAAGGAACTGGATTACCCTTTGGTTTAAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTCTCATTTGGGCTCTTTACTTTGTCTATGCTTCTGGTCTTGAAGAGGATGAGGAATCTGGATTGTCCCTTTAA

Coding sequence (CDS)

ATGGCCACCATCACAGCTAGCTCTTCAGCTTCTTTGGTTGCACGTGCTAGTCTCGTGCACAACTCTAGGGTTGGAGTTTCATCTTCACCTATTCTTGGATTGCCATCAATGACAAAGAGGAGCAAAGTAACATGTTCAATTGAGAACAAGCCATCAACCACAGAGACCACCACCACAACAAACAAGAGCATGGGTGCATCATTGCTAGCCGCCGCTGCGGCCGCAACCATTTCAAACCCAGCAATGGCTCTTGTTGATGAGAGAATGAGCACAGAAGGAACTGGATTACCCTTTGGTTTAAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTCTCATTTGGGCTCTTTACTTTGTCTATGCTTCTGGTCTTGAAGAGGATGAGGAATCTGGATTGTCCCTTTAA

Protein sequence

MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02381.1Spo02381.1mRNA


Homology
[Close]
BLAST of Spo02381.1 vs. NCBI nr
Match: gi|2493694|sp|Q41387.1|PSBW_SPIOL (RecName: Full=Photosystem II reaction center W protein, chloroplastic; AltName: Full=PSII 6.1 kDa protein; Flags: Precursor [Spinacia oleracea])

HSP 1 Score: 248.4 bits (633), Expect = 7.000e-63
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT
Sbjct: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
           NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY
Sbjct: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVYASGLEEDEESGLSL
Sbjct: 121 FVYASGLEEDEESGLSL 137
[Close]
BLAST of Spo02381.1 vs. NCBI nr
Match: gi|731336281|ref|XP_010679171.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 205.7 bits (522), Expect = 5.200e-50
Identity = 114/137 (83.21%), Postives = 126/137 (91.97%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATITASSSASLVARASLV N RVGVSSS +LGLP++TK+ KVTCS+E+KPS  E  +TT
Sbjct: 1   MATITASSSASLVARASLVQNRRVGVSSSLVLGLPAITKKGKVTCSMESKPSNQE--STT 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
            K MGASLLAAAAAAT+S+PAMALVD+RMSTEGTGLPFGLSNNLLGWI+FGVFGLIWALY
Sbjct: 61  KKGMGASLLAAAAAATMSSPAMALVDDRMSTEGTGLPFGLSNNLLGWIIFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVY SGL+EDEESGLSL
Sbjct: 121 FVYVSGLDEDEESGLSL 135
[Close]
BLAST of Spo02381.1 vs. NCBI nr
Match: gi|720058136|ref|XP_010274189.1| (PREDICTED: photosystem II reaction center W protein, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 172.2 bits (435), Expect = 6.400e-40
Identity = 93/137 (67.88%), Postives = 114/137 (83.21%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MA+I+A++  S V RASLV  S +G SSSP+LGLP++ +R +V CS+E KPS +  +++ 
Sbjct: 1   MASISATTPTSSVVRASLVRKSSIGTSSSPVLGLPALARRGRVMCSVEEKPSASSVSSSV 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
             SMGASL+AAA AAT+SNPA+ALVDER+STEGTGLPFGLSNNLLGWIL GVF LIW+LY
Sbjct: 61  --SMGASLMAAACAATMSNPALALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWSLY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVY + LEEDEESGLSL
Sbjct: 121 FVYTATLEEDEESGLSL 135
[Close]
BLAST of Spo02381.1 vs. NCBI nr
Match: gi|593798916|ref|XP_007162496.1| (hypothetical protein PHAVU_001G157100g [Phaseolus vulgaris])

HSP 1 Score: 171.4 bits (433), Expect = 1.100e-39
Identity = 96/137 (70.07%), Postives = 111/137 (81.02%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATI A S  + ++R+ LV     GVSSS +LGLP+M++  KV CS++ KPS  E   ++
Sbjct: 1   MATIIAGSPTTSISRSGLVLKRPFGVSSSTVLGLPAMSRAGKVRCSMDEKPSVQE--NSS 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
           N  MGASLLAAA AAT+S+PAMALVDER+STEGTGLPFGLSNNLLGWILFGVFGLIWALY
Sbjct: 61  NVGMGASLLAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVY S LEEDEESGLSL
Sbjct: 121 FVYTSSLEEDEESGLSL 135
[Close]
BLAST of Spo02381.1 vs. NCBI nr
Match: gi|351727755|ref|NP_001235636.1| (uncharacterized protein LOC100306223 [Glycine max])

HSP 1 Score: 171.0 bits (432), Expect = 1.400e-39
Identity = 98/137 (71.53%), Postives = 109/137 (79.56%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATI A    + + RA LV    VG SSS +LGLP+M K  KV CS+E KPS++     +
Sbjct: 1   MATIIAGIPTTSITRAGLVLKRPVGASSSTVLGLPAMAKAGKVRCSMEEKPSSS-----S 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
           N  MGASLLAAA AAT+S+PAMALVDER+STEGTGLPFGLSNNLLGWILFGVFGLIWALY
Sbjct: 61  NIGMGASLLAAAVAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVYAS LEEDEESGLSL
Sbjct: 121 FVYASTLEEDEESGLSL 132
[Close]
BLAST of Spo02381.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGH9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_069230 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.900e-63
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT
Sbjct: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
           NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY
Sbjct: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVYASGLEEDEESGLSL
Sbjct: 121 FVYASGLEEDEESGLSL 137
[Close]
BLAST of Spo02381.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F3G1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g120370 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.600e-50
Identity = 114/137 (83.21%), Postives = 126/137 (91.97%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATITASSSASLVARASLV N RVGVSSS +LGLP++TK+ KVTCS+E+KPS  E  +TT
Sbjct: 1   MATITASSSASLVARASLVQNRRVGVSSSLVLGLPAITKKGKVTCSMESKPSNQE--STT 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
            K MGASLLAAAAAAT+S+PAMALVD+RMSTEGTGLPFGLSNNLLGWI+FGVFGLIWALY
Sbjct: 61  KKGMGASLLAAAAAATMSSPAMALVDDRMSTEGTGLPFGLSNNLLGWIIFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVY SGL+EDEESGLSL
Sbjct: 121 FVYVSGLDEDEESGLSL 135
[Close]
BLAST of Spo02381.1 vs. UniProtKB/TrEMBL
Match: V7CYY2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G157100g PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.600e-40
Identity = 96/137 (70.07%), Postives = 111/137 (81.02%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATI A S  + ++R+ LV     GVSSS +LGLP+M++  KV CS++ KPS  E   ++
Sbjct: 1   MATIIAGSPTTSISRSGLVLKRPFGVSSSTVLGLPAMSRAGKVRCSMDEKPSVQE--NSS 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
           N  MGASLLAAA AAT+S+PAMALVDER+STEGTGLPFGLSNNLLGWILFGVFGLIWALY
Sbjct: 61  NVGMGASLLAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVY S LEEDEESGLSL
Sbjct: 121 FVYTSSLEEDEESGLSL 135
[Close]
BLAST of Spo02381.1 vs. UniProtKB/TrEMBL
Match: C6SYI0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G161400 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.900e-40
Identity = 98/137 (71.53%), Postives = 109/137 (79.56%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATI A    + + RA LV    VG SSS +LGLP+M K  KV CS+E KPS++     +
Sbjct: 1   MATIIAGIPTTSITRAGLVLKRPVGASSSTVLGLPAMAKAGKVRCSMEEKPSSS-----S 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
           N  MGASLLAAA AAT+S+PAMALVDER+STEGTGLPFGLSNNLLGWILFGVFGLIWALY
Sbjct: 61  NIGMGASLLAAAVAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVYAS LEEDEESGLSL
Sbjct: 121 FVYASTLEEDEESGLSL 132
[Close]
BLAST of Spo02381.1 vs. UniProtKB/TrEMBL
Match: A0A0B2NZN7_GLYSO (Photosystem II reaction center W protein, chloroplastic OS=Glycine soja GN=glysoja_002559 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.900e-40
Identity = 98/137 (71.53%), Postives = 109/137 (79.56%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATI A    + + RA LV    VG SSS +LGLP+M K  KV CS+E KPS++     +
Sbjct: 1   MATIIAGIPTTSITRAGLVLKRPVGASSSTVLGLPAMAKAGKVRCSMEEKPSSS-----S 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
           N  MGASLLAAA AAT+S+PAMALVDER+STEGTGLPFGLSNNLLGWILFGVFGLIWALY
Sbjct: 61  NIGMGASLLAAAVAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVYAS LEEDEESGLSL
Sbjct: 121 FVYASTLEEDEESGLSL 132
[Close]
BLAST of Spo02381.1 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.400e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60
           MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT
Sbjct: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTT 60

Query: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120
           NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY
Sbjct: 61  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 120

Query: 121 FVYASGLEEDEESGLSL 138
           FVYASGLEEDEESGLSL
Sbjct: 121 FVYASGLEEDEESGLSL 137
[Close]
BLAST of Spo02381.1 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 1.100e-31
Identity = 86/141 (60.99%), Postives = 98/141 (69.50%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSM-TKRSKVTCSIENKPSTTETTTT 60
           MA+ TAS+S    AR +L+    V +S+ P+LGLP M  K+  V CS+E K         
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISA-PVLGLPPMGKKKGGVRCSMETKQGNVSV--- 60

Query: 61  TNKSMGASLLAAAAAA---TISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLI 120
               MGA + AAA AA    +SNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLI
Sbjct: 61  ----MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLI 120

Query: 121 WALYFVYASGLEEDEESGLSL 138
           W  +FVY S LEEDEESGLSL
Sbjct: 121 WTFFFVYTSSLEEDEESGLSL 133
[Close]
BLAST of Spo02381.1 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.700e-24
Identity = 77/136 (56.62%), Postives = 90/136 (66.18%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKR--SKVTCSIENKPSTTETTT 60
           MAT++A+++ S+VARA L         + P LGLP M  R   +V C+   + +T     
Sbjct: 1   MATVSAAAATSVVARAVL---------AGP-LGLPQMRARRSERVRCNYSKEAATPAAAV 60

Query: 61  TTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWA 120
              K  GASLLA AA A    PAMALVDERMSTEGTGL  GLSNNLLGWIL GVFGLIW+
Sbjct: 61  ---KGAGASLLAMAATAA---PAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWS 120

Query: 121 LYFVYASGLEEDEESG 135
           LY +Y S LEEDEESG
Sbjct: 121 LYTIYTSDLEEDEESG 120
[Close]
BLAST of Spo02381.1 vs. ExPASy Swiss-Prot
Match: PSBW_CHLRE (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.800e-11
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 1 

		  

Query: 56  TTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGL 115
           TT  +  +   ++L+   A   ++PA ALVDERM+ +GTG PFG+++ +LGW+L GVFG 
Sbjct: 32  TTVRSEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGT 91

Query: 116 IWALYFVYASGLE--EDEESGLSL 138
           +WA++F+    L   ED + GL L
Sbjct: 92  MWAIWFIGQKDLGDFEDADDGLKL 115
[Close]
BLAST of Spo02381.1 vs. TAIR (Arabidopsis)
Match: AT2G30570.1 (photosystem II reaction center W)

HSP 1 Score: 137.5 bits (345), Expect = 6.200e-33
Identity = 86/141 (60.99%), Postives = 98/141 (69.50%), Query Frame = 1 

		  

Query: 1   MATITASSSASLVARASLVHNSRVGVSSSPILGLPSM-TKRSKVTCSIENKPSTTETTTT 60
           MA+ TAS+S    AR +L+    V +S+ P+LGLP M  K+  V CS+E K         
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISA-PVLGLPPMGKKKGGVRCSMETKQGNVSV--- 60

Query: 61  TNKSMGASLLAAAAAA---TISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLI 120
               MGA + AAA AA    +SNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLI
Sbjct: 61  ----MGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLI 120

Query: 121 WALYFVYASGLEEDEESGLSL 138
           W  +FVY S LEEDEESGLSL
Sbjct: 121 WTFFFVYTSSLEEDEESGLSL 133
The following BLAST results are available for this feature:
BLAST of Spo02381.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|2493694|sp|Q41387.1|PSBW_SPIOL7.0e-63100.RecName: Full=Photosystem II r... [more]
gi|731336281|ref|XP_010679171.1|5.2e-5083.2PREDICTED: photosystem II reac... [more]
gi|720058136|ref|XP_010274189.1|6.4e-4067.8PREDICTED: photosystem II reac... [more]
gi|593798916|ref|XP_007162496.1|1.1e-3970.0hypothetical protein PHAVU_001... [more]
gi|351727755|ref|NP_001235636.1|1.4e-3971.5uncharacterized protein LOC100... [more]
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BLAST of Spo02381.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RGH9_SPIOL4.9e-63100.Uncharacterized protein OS=Spi... [more]
A0A0J8F3G1_BETVU3.6e-5083.2Uncharacterized protein OS=Bet... [more]
V7CYY2_PHAVU7.6e-4070.0Uncharacterized protein OS=Pha... [more]
C6SYI0_SOYBN9.9e-4071.5Uncharacterized protein OS=Gly... [more]
A0A0B2NZN7_GLYSO9.9e-4071.5Photosystem II reaction center... [more]
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BLAST of Spo02381.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSBW_SPIOL4.4e-65100.Photosystem II reaction center... [more]
PSBW_ARATH1.1e-3160.9Photosystem II reaction center... [more]
PSBW_ORYSJ1.7e-2456.6Photosystem II reaction center... [more]
PSBW_CHLRE4.8e-1142.8Photosystem II reaction center... [more]
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BLAST of Spo02381.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G30570.16.2e-3360.9photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009806Photosystem II PsbW, class 2PFAMPF07123PsbWcoord: 1..137
score: 5.7
NoneNo IPR availablePANTHERPTHR34552FAMILY NOT NAMEDcoord: 2..137
score: 1.4
NoneNo IPR availablePANTHERPTHR34552:SF1PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTICcoord: 2..137
score: 1.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0006508 proteolysis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009507 chloroplast
molecular_function GO:0005524 ATP binding
molecular_function GO:0004252 serine-type endopeptidase activity
RNA-Seq Expression