Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAAAAAATAAAATCATAAAATACCTGCATAAATTTCTAAGCAAAAAACAGACGTTTCCTCTTCTCCGCTTCTATATATACCCCACACAGTTAGCCCTCACATCCCTCGTTTATCCATTTCTGCTCACCACTTTTTCCTCTCTCTCCATTTTCGTCTTCCTCTTCTCCTTCGAGTCCTCTTTCTCTCTCCTAGGGTTAGGGTTTCTGCGCATTTTTTTCATTCTCTTCCAAAATTTCGGAGATGGCGACAGAGGTTAAGAACGGAGCTGAGAAGAACGGTGCTGCTGCAACAACTGTTGCTTTCTCGGCGTTCAAGCTACAACTTCAGGTTCTAGCTCCTAAGGCTGCTGATGCTGTTCAGTTCTACAAGTCTGCCTTCGGCGCTGAGGAAGTCAGCCGTGACATGCACCCTAAGAGGAAGGCTGAGCAGGATTCTCCTCTCGTTCTTTCTGTTGATCTCAAGGTTGGAGGCTTCGTCTTCTCGGTCGCTGACCTTACTGGTGACTCTGAGTAAGATCTCTTTTCTCTCTGCTCTGTTTCCTCTCTTCATTTCGTTTTCTGACATATATTTGCGGTTTTCTGGTGATTTGTGGCGTAGTTTGCTTGTTGCATATTATTTGGTTGTTGATGGAGTAATATTTTAATTTTAACTATTATTTTCTCCGTTAAGGCGAGTTATTATGCAGATAATTTATTTTCTGCGTTTCATCTTTGTTTTAAGGTTGCTTGAGGTTTATGCATGATTATTCTGGGTGATTCGCTTTTTCGTAGATTAATATTCTCAGCTGAGCATGTTAATTGTTTATTTTGCAATTATTCTCAGACTTATTTCTCAATAATTTGCTCATTTCAACGTGTAAATCAAAGAATCAACAAAGTTATGTGACTATTTGTTGTTGCTGCTTTATTTCATTTGTGTCTATATTTTTTGTTTAATATCATTATCACTCCGTCAGTGTAGAAATCGCTTTTTAGAAAGTGACGTTTCAGCTTTGTTTTACTTTTGATTTCTCAGTAATGATTTTAACTTCTCTTTTACTCCGTATCTCTTTACCAAATTTTTATCACTAATACTTTAAAATGAAACTTCTAATATTTCAGATCTGCAGGTTTTCAGAATGGAAATACATTTTAAAATAGTTTTACTTACTTTTTTTACTCGTTTTTATTTTGTCTGATCTCGTTCTCTGTCTTATTCGTACAATTTGTTGTTTCCAAATTGTAATAAAATTTTATTTAAAAAATGTAGGGTGAAAAATGAAGGAGCTGCTGGCGTTGTGTTCTGCTTGGAGACCGATAACCTGGATGGTGCCCTTGCTGCTGCAGTCTCTGCTGGGGCCGTGGCCGAAGGTGAAGTGACAGAGGACGAAGTTGCCGGGCGCGTGGGCAAGCTCAAGGATCCCTTTGGCTACACTTGGGTCATCTCTTCCCCTGCTGCTAAGAAGCCTGCTGACGTCGCTGCCTAAATCACCGTCTGATCTTGATAACTTCTGACATTAGGTCTATTGAATTCTGGAAGTACTTGTTATTAGTCGCAGTAGTTAATTAGCAGTAAGTAAGAAGAAGAAAAAAAGCAGTAGATGAATGAACAGTTTTAACGGTGGTGGGTGTTCATAGCTTAATGCTTACGACTCTCTGGTTGTCCTAAAATTCATTTTGAATTTTGAATGACTTTTTGATGGAGAAAATACTTTTGTATCAACCGGCAGTTGGCGGTCTCTCTTTGGCCGTGATTTTAATGGAGTAGTAATGTTTACCGGTTACTTTTTGTTTGTCTCCGTTAATTTTCCGTTATGATTCTGTTAGCATTCACCTATCTTGAATTCTGTTTGTGCCTTTTTGTTAACTGTGTGATTAGTTTTGGAATCAAAGCTTTGGTAGTGGAAAGTTTTACGGGGAAGTGTAATTAAATGAAAATATTTAATTGAAATTAAAT TAAAAAAATAAAATCATAAAATACCTGCATAAATTTCTAAGCAAAAAACAGACGTTTCCTCTTCTCCGCTTCTATATATACCCCACACAGTTAGCCCTCACATCCCTCGTTTATCCATTTCTGCTCACCACTTTTTCCTCTCTCTCCATTTTCGTCTTCCTCTTCTCCTTCGAGTCCTCTTTCTCTCTCCTAGGGTTAGGGTTTCTGCGCATTTTTTTCATTCTCTTCCAAAATTTCGGAGATGGCGACAGAGGTTAAGAACGGAGCTGAGAAGAACGGTGCTGCTGCAACAACTGTTGCTTTCTCGGCGTTCAAGCTACAACTTCAGGTTCTAGCTCCTAAGGCTGCTGATGCTGTTCAGTTCTACAAGTCTGCCTTCGGCGCTGAGGAAGTCAGCCGTGACATGCACCCTAAGAGGAAGGCTGAGCAGGATTCTCCTCTCGTTCTTTCTGTTGATCTCAAGGTTGGAGGCTTCGTCTTCTCGGTCGCTGACCTTACTGGTGACTCTGAGGTGAAAAATGAAGGAGCTGCTGGCGTTGTGTTCTGCTTGGAGACCGATAACCTGGATGGTGCCCTTGCTGCTGCAGTCTCTGCTGGGGCCGTGGCCGAAGGTGAAGTGACAGAGGACGAAGTTGCCGGGCGCGTGGGCAAGCTCAAGGATCCCTTTGGCTACACTTGGGTCATCTCTTCCCCTGCTGCTAAGAAGCCTGCTGACGTCGCTGCCTAAATCACCGTCTGATCTTGATAACTTCTGACATTAGGTCTATTGAATTCTGGAAGTACTTGTTATTAGTCGCAGTAGTTAATTAGCAGTAAGTAAGAAGAAGAAAAAAAGCAGTAGATGAATGAACAGTTTTAACGGTGGTGGGTGTTCATAGCTTAATGCTTACGACTCTCTGGTTGTCCTAAAATTCATTTTGAATTTTGAATGACTTTTTGATGGAGAAAATACTTTTGTATCAACCGGCAGTTGGCGGTCTCTCTTTGGCCGTGATTTTAATGGAGTAGTAATGTTTACCGGTTACTTTTTGTTTGTCTCCGTTAATTTTCCGTTATGATTCTGTTAGCATTCACCTATCTTGAATTCTGTTTGTGCCTTTTTGTTAACTGTGTGATTAGTTTTGGAATCAAAGCTTTGGTAGTGGAAAGTTTTACGGGGAAGTGTAATTAAATGAAAATATTTAATTGAAATTAAAT ATGGCGACAGAGGTTAAGAACGGAGCTGAGAAGAACGGTGCTGCTGCAACAACTGTTGCTTTCTCGGCGTTCAAGCTACAACTTCAGGTTCTAGCTCCTAAGGCTGCTGATGCTGTTCAGTTCTACAAGTCTGCCTTCGGCGCTGAGGAAGTCAGCCGTGACATGCACCCTAAGAGGAAGGCTGAGCAGGATTCTCCTCTCGTTCTTTCTGTTGATCTCAAGGTTGGAGGCTTCGTCTTCTCGGTCGCTGACCTTACTGGTGACTCTGAGGTGAAAAATGAAGGAGCTGCTGGCGTTGTGTTCTGCTTGGAGACCGATAACCTGGATGGTGCCCTTGCTGCTGCAGTCTCTGCTGGGGCCGTGGCCGAAGGTGAAGTGACAGAGGACGAAGTTGCCGGGCGCGTGGGCAAGCTCAAGGATCCCTTTGGCTACACTTGGGTCATCTCTTCCCCTGCTGCTAAGAAGCCTGCTGACGTCGCTGCCTAA MATEVKNGAEKNGAAATTVAFSAFKLQLQVLAPKAADAVQFYKSAFGAEEVSRDMHPKRKAEQDSPLVLSVDLKVGGFVFSVADLTGDSEVKNEGAAGVVFCLETDNLDGALAAAVSAGAVAEGEVTEDEVAGRVGKLKDPFGYTWVISSPAAKKPADVAA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00285.1 vs. NCBI nr
Match: gi|902220490|gb|KNA18622.1| (hypothetical protein SOVF_069060 [Spinacia oleracea]) HSP 1 Score: 306.2 bits (783), Expect = 3.300e-80 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1
BLAST of Spo00285.1 vs. NCBI nr
Match: gi|731335861|ref|XP_010678948.1| (PREDICTED: uncharacterized protein At5g48480 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 193.4 bits (490), Expect = 3.200e-46 Identity = 110/162 (67.90%), Postives = 129/162 (79.63%), Query Frame = 1
BLAST of Spo00285.1 vs. NCBI nr
Match: gi|698523335|ref|XP_009758474.1| (PREDICTED: uncharacterized protein At5g48480-like [Nicotiana sylvestris]) HSP 1 Score: 172.2 bits (435), Expect = 7.500e-40 Identity = 96/160 (60.00%), Postives = 122/160 (76.25%), Query Frame = 1
BLAST of Spo00285.1 vs. NCBI nr
Match: gi|697182894|ref|XP_009600460.1| (PREDICTED: uncharacterized protein At5g48480 [Nicotiana tomentosiformis]) HSP 1 Score: 170.2 bits (430), Expect = 2.900e-39 Identity = 96/160 (60.00%), Postives = 121/160 (75.62%), Query Frame = 1
BLAST of Spo00285.1 vs. NCBI nr
Match: gi|1012329348|gb|KYP40934.1| (Uncharacterized protein At5g48480 family [Cajanus cajan]) HSP 1 Score: 169.5 bits (428), Expect = 4.900e-39 Identity = 101/165 (61.21%), Postives = 121/165 (73.33%), Query Frame = 1
BLAST of Spo00285.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIF3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_069060 PE=4 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 2.300e-80 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1
BLAST of Spo00285.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C8R6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118430 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 2.200e-46 Identity = 110/162 (67.90%), Postives = 129/162 (79.63%), Query Frame = 1
BLAST of Spo00285.1 vs. UniProtKB/TrEMBL
Match: A0A151RE55_CAJCA (Uncharacterized protein At5g48480 family OS=Cajanus cajan GN=KK1_037702 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 3.400e-39 Identity = 101/165 (61.21%), Postives = 121/165 (73.33%), Query Frame = 1
BLAST of Spo00285.1 vs. UniProtKB/TrEMBL
Match: C6SZI9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G344200 PE=2 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 2.200e-38 Identity = 94/162 (58.02%), Postives = 116/162 (71.60%), Query Frame = 1
BLAST of Spo00285.1 vs. UniProtKB/TrEMBL
Match: W9RDZ4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015849 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 9.300e-37 Identity = 95/163 (58.28%), Postives = 118/163 (72.39%), Query Frame = 1
BLAST of Spo00285.1 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 5.400e-22 Identity = 74/155 (47.74%), Postives = 91/155 (58.71%), Query Frame = 1
BLAST of Spo00285.1 vs. TAIR (Arabidopsis)
Match: AT5G48480.1 (Lactoylglutathione lyase / glyoxalase I family protein) HSP 1 Score: 105.5 bits (262), Expect = 3.100e-23 Identity = 74/155 (47.74%), Postives = 91/155 (58.71%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00285.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00285.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00285.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo00285.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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