Spo25259 (gene)

Overview
NameSpo25259
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRING finger family protein
Locationchr5 : 7453771 .. 7456957 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTCCGCGATTTTCCCCCACCGTCAGAAAATTTAGCGTAGAGAGAGAGAGCAGAAATTGATGCAGTTTTCTTCGCTAATTTCAAATTTCTAGGTTTAATTACAATTTTTGTTTGGAATCGAATTTTGGGTATTTCAAAAGAGGGAAGAAATGGGTACCCCAGAACCAAGTATTGATGATTTGTTCGAATCGAAGAAGAGAATCAAGAACCCTTTAGTCCCAATTGGTAAAATTTCCCAACTTTTCAATCTGTACAAATTCATTTGCTTCTATCTCCGTATTATATTTTACATTTTAGATTCATTTTTGTGCTTCCTTATATCGATTCATGGTGTGAAATGTGAATGAAATTTGTGGACCTTGTGGTTATTAAGCTACAATTACTTGGTTTTATTATTCAAAATTTGCGCAATAATATGTTAATTTGGTCATTCATACGATGATATAGTAGCAAATTTTCCAAATGAGGGTGAGCGATTGAGCTTCTAGGTGTCTTTTGGAATTAGGAAAAATAGCATTGGGGATTTATCTTATTCTGTTTTTGTTCATGTTTATTTGGTGGAGTTTCTTGGATTAATGGTACTTTTTTGGGGCGGAAATCGTTGATAAACGTTGAAGAAGGATGGGTGTTTCCCAATATTGGCATATTACTTGATCATTTCGTGATGGAGTCATTTTCTATAGAATGGGGGAGGGGCTAAGTTGAGAGTTACCTGAGGACGTTTTGAGTTGTAGATCAACCGTAACTGGGTTTGTATGCGTTGTTGATTCGAGGACTTGCTGAGGCTGAGGAAGCTGGTGGGAGTTTGGTATTAATTTTTTTGGAACTCGAACTGTAACTAGTATGATGAATCATCTGTCATAGGCTCATAGCCTCATAGGGATATAGCTGTATGAGGTTGAGGTTGAGGTTGATAAGGTTTCTTATTGAGGGACTTATGCAATGTGGTTATGATGCTTTTGTCATAGAATAATCTGGACTAGCGATAAATCTTTTCCTAGGACACTTGAAATATGTTGATTTGAGAAGTTTTATGGAAGGTTTTCTTGATTTATGTTTGTGTTTTGTTTGACCTTTGATTTTCTCTCCCATGGACTTTCCTTTCCCATTAGGTTTACATGGTCGGTTTAAATAGGTGTGCTTAGAATTTTAATCTTAATACAGAGTACGACTTTTCCATTTTGTGATTAAGTCTCTAGTGCCACCTACAAAGTAGAAGATCACAGCGTGTCAAAGACACTGGAAAGAAAGTAGTGAATATGATTGTACAGGAAATATGAAATAGGGCATGCTGATATCAATTTGAAATAAGTTGCTCTTCTTTTATGAGTTCAAAATCATATACACAGCATAGATGATTGGAAGAAAGACTTGATGGATGAGTATGTCAACTGGCCCGAGACGTAAGTGGGACACACAATGGTACATCTTGATAATGTACGTAGTATGTAACTATATACTTTAGAATTCCAAACATATAAAAAGAGTTAAGGTTCTTTTTGCTTGATTGATTGTAAAATGGTGTATACAAAAGCAGGGTGAGGGGATCATCCTTTGTTGATGATATAGATATGCTAAACTTATATGACCCAAGTCACACAGTTTTTCTCTAATAGTTCTTGTGACAAGTTTTCACCTGTTGAAACTTTCTGGACTTGTGAGTTATGAGTTAGAACTATATTTTTACCCCAGCCCCCCACCCCCACCCCCACCCAACCCAAACCAGGGGTGTGAGATTTATCTTCAATCTTGGTATGGATTTGAACGGCTCCCTAATTTGGATGTGAATTAAGCTACTTGATCCCTGTAATATTTGTTGTATTGCATTGTGAATTCCCATTTTCAACAAATCTTGTTATTAACTTTACCAAAGAATACAACTTCCATCAATTGCAACTGCAAATTCAAACTTCCCCCAAGACTGTACTCACCTGATTTAGAAAGAAAAAGAAGGATTTCCATGGATATGTCATCATTATCATTATCATTACCCCATTGCCTCAAAGAGGCTCCCGCAAGAAGCGGGGTAAGAGGGGTCGGACGTACGCAACCTTACCCCTGCAATTGCAGAGAGGTTGTTTCCAATGGATATGTGACATTATAAAATCAAAAGAAAACCATTGGGCTTCCATCCGGACTAATGTGCAACCCTGAGTCAGTATATGTTCAATTATAGCCTTGAGATTGTAGAGGTTCTATCTTCATTGGTTCAGTGATTGAAATTATGTCTAGATGCCTCAGAAATATTTCACAACAAGTCTGATATCTACTTGAAAATCCACTAGGTAGTACAACAAGTACACTGGCTTTACTGAAGGTTGTATTTTTGTGTTTCCGTTGACTTGGCTTCTTTTCTTCCCTGAAACAATGGTTAATCAAGTTATGGCTTAGTATGTTGAGCTTGTTTGTAGGTATTTTATGCCTGCATTAAGGTAAACTTAGGTAATTTGGTTCATGTTTGAGATTTTCAGGTGCATTAATGACTGCTGGAGTTCTTACCGCCGGATTAATAAGTTTTAGGCAAGGGAATTCAAAGTTAGGTCAAAGATTGATGAGAGCCCGTGTGATAGTTCAAGGTGCAACTGTTGCTCTTATGGTTGGCACAGCTAGCTATTATGGCGAAAGCTTCCCCAAATTTCCGAAATTCCCCGGCCTTTGAGTTATTTCAGACTGCAACATTCAGCCCTTTGCATTTTAGTATACCTTGATTCAAGCAACTTGGTAATACCTTACCAAGGACAAGCAACTCCCAGGCTTAGTTATTGTCCTATTTTCTTCAAATATCCTGAGTTGCTCCAAAGGGGAAAGTACATGTGTGCAGCATTTCAGTTTTGAGATTTTGATTGTAAAAGGAATAATAATAATAGACTTCTTCCCTAATTTTGGGAGTAACAAGTATAGTAGAACAGGTTGATCATCAGGCTTGTAGGCCTTGTAATAATTTAGTCTGATTTTTTTTCTACTGATTGGGTGGAAAATTCAACCCTCCCAATCTTATGGAGTAAAATCAAATACGAAGTTGTTGTCAAAATTTGTTTATATACGCTGGACCGCTGGTCACAATTCGTACTTCTTTTTGTGTGTGTTTGTGCAGTGATTGTGTGCTTCAGCTTAAATTTCGAAAATGTTACTCCTTCCGTTTCTTTTTGTTTGTTACGTTTTGGACTTTTGCACGTTTATTAACGT

mRNA sequence

GTCTCCGCGATTTTCCCCCACCGTCAGAAAATTTAGCGTAGAGAGAGAGAGCAGAAATTGATGCAGTTTTCTTCGCTAATTTCAAATTTCTAGGTTTAATTACAATTTTTGTTTGGAATCGAATTTTGGGTATTTCAAAAGAGGGAAGAAATGGGTACCCCAGAACCAAGTATTGATGATTTGTTCGAATCGAAGAAGAGAATCAAGAACCCTTTAGTCCCAATTGGTGCATTAATGACTGCTGGAGTTCTTACCGCCGGATTAATAAGTTTTAGGCAAGGGAATTCAAAGTTAGGTCAAAGATTGATGAGAGCCCGTGTGATAGTTCAAGGTGCAACTGTTGCTCTTATGGTTGGCACAGCTAGCTATTATGGCGAAAGCTTCCCCAAATTTCCGAAATTCCCCGGCCTTTGAGTTATTTCAGACTGCAACATTCAGCCCTTTGCATTTTAGTATACCTTGATTCAAGCAACTTGGTAATACCTTACCAAGGACAAGCAACTCCCAGGCTTAGTTATTGTCCTATTTTCTTCAAATATCCTGAGTTGCTCCAAAGGGGAAAGTACATGTGTGCAGCATTTCAGTTTTGAGATTTTGATTGTAAAAGGAATAATAATAATAGACTTCTTCCCTAATTTTGGGAGTAACAAGTATAGTAGAACAGGTTGATCATCAGGCTTGTAGGCCTTGTAATAATTTAGTCTGATTTTTTTTCTACTGATTGGGTGGAAAATTCAACCCTCCCAATCTTATGGAGTAAAATCAAATACGAAGTTGTTGTCAAAATTTGTTTATATACGCTGGACCGCTGGTCACAATTCGTACTTCTTTTTGTGTGTGTTTGTGCAGTGATTGTGTGCTTCAGCTTAAATTTCGAAAATGTTACTCCTTCCGTTTCTTTTTGTTTGTTACGTTTTGGACTTTTGCACGTTTATTAACGT

Coding sequence (CDS)

ATGGGTACCCCAGAACCAAGTATTGATGATTTGTTCGAATCGAAGAAGAGAATCAAGAACCCTTTAGTCCCAATTGGTGCATTAATGACTGCTGGAGTTCTTACCGCCGGATTAATAAGTTTTAGGCAAGGGAATTCAAAGTTAGGTCAAAGATTGATGAGAGCCCGTGTGATAGTTCAAGGTGCAACTGTTGCTCTTATGGTTGGCACAGCTAGCTATTATGGCGAAAGCTTCCCCAAATTTCCGAAATTCCCCGGCCTTTGA

Protein sequence

MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQGATVALMVGTASYYGESFPKFPKFPGL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25259.1Spo25259.1mRNA


Homology
[Close]
BLAST of Spo25259.1 vs. NCBI nr
Match: gi|902165991|gb|KNA07185.1| (hypothetical protein SOVF_174170 [Spinacia oleracea])

HSP 1 Score: 174.1 bits (440), Expect = 1.100e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ
Sbjct: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60

Query: 61 GATVALMVGTASYYGESFPKFPKFPGL 88
          GATVALMVGTASYYGESFPKFPKFPGL
Sbjct: 61 GATVALMVGTASYYGESFPKFPKFPGL 87
[Close]
BLAST of Spo25259.1 vs. NCBI nr
Match: gi|731335439|ref|XP_010678728.1| (PREDICTED: RING-H2 finger protein ATL48 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 161.0 bits (406), Expect = 9.400e-37
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          M  PEPSI+DLFE KKR+KNPLVPIGALMTAGVLTAGLISFRQGNS+LGQRLMRARV+VQ
Sbjct: 1  MSNPEPSIEDLFEGKKRVKNPLVPIGALMTAGVLTAGLISFRQGNSQLGQRLMRARVVVQ 60

Query: 61 GATVALMVGTASYYGESFPKFPKFPGL 88
          GATVALMVGTA YYGE+FPKFPKFPGL
Sbjct: 61 GATVALMVGTAYYYGETFPKFPKFPGL 87
[Close]
BLAST of Spo25259.1 vs. NCBI nr
Match: gi|566197353|ref|XP_006376844.1| (hypothetical protein POPTR_0012s07940g [Populus trichocarpa])

HSP 1 Score: 127.5 bits (319), Expect = 1.100e-26
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          MGT EP+ + LFE KKR++NPLVP+GALMTAGVLTAGLISFR+GNS+LGQ LMRARV+VQ
Sbjct: 4  MGTAEPNFEQLFEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 63

Query: 61 GATVALMVGTASYYGESFPKFP 83
          GATVALMVGTA YYG++  K P
Sbjct: 64 GATVALMVGTAFYYGDNPWKKP 85
[Close]
BLAST of Spo25259.1 vs. NCBI nr
Match: gi|566206610|ref|XP_006374514.1| (hypothetical protein POPTR_0015s08460g [Populus trichocarpa])

HSP 1 Score: 127.5 bits (319), Expect = 1.100e-26
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1 

		  

Query: 1   MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
           MGT EP+ + LFE KKR++NPLVP+GALMTAGVLTAGLISFR+GNS+LGQ LMRARV+VQ
Sbjct: 19  MGTAEPNFEQLFEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 78

Query: 61  GATVALMVGTASYYGESFPKFP 83
           GATVALMVGTA YYG++  K P
Sbjct: 79  GATVALMVGTAFYYGDNPWKKP 100
[Close]
BLAST of Spo25259.1 vs. NCBI nr
Match: gi|357477323|ref|XP_003608947.1| (RING-H2 finger ATL48-like protein [Medicago truncatula])

HSP 1 Score: 127.5 bits (319), Expect = 1.100e-26
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          MG+PEP  +D  E KKR++NP VPIGAL+TAGVLTAGLISFRQGNS+LGQ+LMRARV+VQ
Sbjct: 1  MGSPEPGFEDFLEEKKRVRNPFVPIGALITAGVLTAGLISFRQGNSQLGQKLMRARVVVQ 60

Query: 61 GATVALMVGTASYYGES 78
          GATVALMVGTA YYG++
Sbjct: 61 GATVALMVGTAYYYGDN 77
[Close]
BLAST of Spo25259.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIV5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_174170 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.500e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ
Sbjct: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60

Query: 61 GATVALMVGTASYYGESFPKFPKFPGL 88
          GATVALMVGTASYYGESFPKFPKFPGL
Sbjct: 61 GATVALMVGTASYYGESFPKFPKFPGL 87
[Close]
BLAST of Spo25259.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEI1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g116630 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.500e-37
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          M  PEPSI+DLFE KKR+KNPLVPIGALMTAGVLTAGLISFRQGNS+LGQRLMRARV+VQ
Sbjct: 1  MSNPEPSIEDLFEGKKRVKNPLVPIGALMTAGVLTAGLISFRQGNSQLGQRLMRARVVVQ 60

Query: 61 GATVALMVGTASYYGESFPKFPKFPGL 88
          GATVALMVGTA YYGE+FPKFPKFPGL
Sbjct: 61 GATVALMVGTAYYYGETFPKFPKFPGL 87
[Close]
BLAST of Spo25259.1 vs. UniProtKB/TrEMBL
Match: U5FQS0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08460g PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.000e-27
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1 

		  

Query: 1   MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
           MGT EP+ + LFE KKR++NPLVP+GALMTAGVLTAGLISFR+GNS+LGQ LMRARV+VQ
Sbjct: 19  MGTAEPNFEQLFEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 78

Query: 61  GATVALMVGTASYYGESFPKFP 83
           GATVALMVGTA YYG++  K P
Sbjct: 79  GATVALMVGTAFYYGDNPWKKP 100
[Close]
BLAST of Spo25259.1 vs. UniProtKB/TrEMBL
Match: G7JNU1_MEDTR (RING-H2 finger ATL48-like protein OS=Medicago truncatula GN=MTR_4g106700 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.000e-27
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          MG+PEP  +D  E KKR++NP VPIGAL+TAGVLTAGLISFRQGNS+LGQ+LMRARV+VQ
Sbjct: 1  MGSPEPGFEDFLEEKKRVRNPFVPIGALITAGVLTAGLISFRQGNSQLGQKLMRARVVVQ 60

Query: 61 GATVALMVGTASYYGES 78
          GATVALMVGTA YYG++
Sbjct: 61 GATVALMVGTAYYYGDN 77
[Close]
BLAST of Spo25259.1 vs. UniProtKB/TrEMBL
Match: A9PFR4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07940g PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.000e-27
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          MGT EP+ + LFE KKR++NPLVP+GALMTAGVLTAGLISFR+GNS+LGQ LMRARV+VQ
Sbjct: 4  MGTAEPNFEQLFEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 63

Query: 61 GATVALMVGTASYYGESFPKFP 83
          GATVALMVGTA YYG++  K P
Sbjct: 64 GATVALMVGTAFYYGDNPWKKP 85
[Close]
BLAST of Spo25259.1 vs. ExPASy Swiss-Prot
Match: ATL48_ARATH (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 3.000e-27
Identity = 58/77 (75.32%), Postives = 70/77 (90.91%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          M + EP ++DLF+ KKR++NPLVP+GALMTAGVLTAGLISFR+GNS+LGQ LMRARV+VQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 61 GATVALMVGTASYYGES 78
          GATVALMVGT  YYG++
Sbjct: 61 GATVALMVGTGYYYGDN 77
[Close]
BLAST of Spo25259.1 vs. ExPASy Swiss-Prot
Match: HIG2A_HUMAN (HIG1 domain family member 2A, mitochondrial OS=Homo sapiens GN=HIGD2A PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.000e-8
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 

		  

Query: 15 KKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQGATV-ALMVGTA 72
          +K  +NP+VPIG L TA  LT GL SF +GNS+  Q +MR R+  QG TV A+++G A
Sbjct: 41 RKTRENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILLGLA 98
[Close]
BLAST of Spo25259.1 vs. ExPASy Swiss-Prot
Match: HIG2B_HUMAN (Putative HIG1 domain family member 2B OS=Homo sapiens GN=HIGD2B PE=5 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.700e-7
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1 

		  

Query: 15  KKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQGATV-ALMVGTASY 74
           +K  +NP+VPIG L TA VLT GL  F QGNS+  + +M  ++  QG T+ A+++G A+ 
Sbjct: 41  RKTRENPVVPIGFLCTAAVLTNGLYCFHQGNSQCSRLMMHTQIAAQGFTIAAILLGLAAT 100

Query: 75  YGESFP 80
             +S P
Sbjct: 101 AMKSPP 106
[Close]
BLAST of Spo25259.1 vs. ExPASy Swiss-Prot
Match: HIG2A_MOUSE (HIG1 domain family member 2A OS=Mus musculus GN=Higd2a PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.300e-6
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1 

		  

Query: 15 KKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQGAT-VALMVGTAS 73
          +K  +NP+VPIG L TA  LT GL  F +G S   Q +MR R+  QG T VA+++G A+
Sbjct: 41 RKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLGLAA 99
[Close]
BLAST of Spo25259.1 vs. TAIR (Arabidopsis)
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 122.1 bits (305), Expect = 1.700e-28
Identity = 58/77 (75.32%), Postives = 70/77 (90.91%), Query Frame = 1 

		  

Query: 1  MGTPEPSIDDLFESKKRIKNPLVPIGALMTAGVLTAGLISFRQGNSKLGQRLMRARVIVQ 60
          M + EP ++DLF+ KKR++NPLVP+GALMTAGVLTAGLISFR+GNS+LGQ LMRARV+VQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 61 GATVALMVGTASYYGES 78
          GATVALMVGT  YYG++
Sbjct: 61 GATVALMVGTGYYYGDN 77
The following BLAST results are available for this feature:
BLAST of Spo25259.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902165991|gb|KNA07185.1|1.1e-40100.hypothetical protein SOVF_1741... [more]
gi|731335439|ref|XP_010678728.1|9.4e-3789.6PREDICTED: RING-H2 finger prot... [more]
gi|566197353|ref|XP_006376844.1|1.1e-2676.8hypothetical protein POPTR_001... [more]
gi|566206610|ref|XP_006374514.1|1.1e-2676.8hypothetical protein POPTR_001... [more]
gi|357477323|ref|XP_003608947.1|1.1e-2677.9RING-H2 finger ATL48-like prot... [more]
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BLAST of Spo25259.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QIV5_SPIOL7.5e-41100.Uncharacterized protein OS=Spi... [more]
A0A0J8CEI1_BETVU6.5e-3789.6Uncharacterized protein OS=Bet... [more]
U5FQS0_POPTR8.0e-2776.8Uncharacterized protein OS=Pop... [more]
G7JNU1_MEDTR8.0e-2777.9RING-H2 finger ATL48-like prot... [more]
A9PFR4_POPTR8.0e-2776.8Uncharacterized protein OS=Pop... [more]
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BLAST of Spo25259.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATL48_ARATH3.0e-2775.3RING-H2 finger protein ATL48 O... [more]
HIG2A_HUMAN7.0e-851.7HIG1 domain family member 2A, ... [more]
HIG2B_HUMAN7.7e-743.9Putative HIG1 domain family me... [more]
HIG2A_MOUSE2.3e-647.4HIG1 domain family member 2A O... [more]
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BLAST of Spo25259.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G48030.11.7e-2875.3hypoxia-responsive family prot... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007667Hypoxia induced protein, domainPFAMPF04588HIG_1_Ncoord: 19..69
score: 3.7
IPR007667Hypoxia induced protein, domainPROFILEPS51503HIG1coord: 1..85
score: 22
NoneNo IPR availablePANTHERPTHR12297HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATEDcoord: 6..76
score: 1.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006457 protein folding
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006950 response to stress
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0048481 plant ovule development
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0000774 adenyl-nucleotide exchange factor activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016853 isomerase activity
molecular_function GO:0042803 protein homodimerization activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo235580.71Barchart | Table
Spo120220.66Barchart | Table