Spo08177 (gene) | SpinachBase

Overview


Name	Spo08177
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Disulfide bond formation protein B 2, putative
Location	chr5 : 10866386 .. 10867992 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCATCATAATTACAACTTTTATTATTTGACTTTTTTTTTTTTTTTGTTGATATTGATTGCTTAGTCTAACCAAACAAACAGTCACCTTCCTTTAGCCCATTAGAAGAATGTATATAAATTGCACCACTTTGCCTTAAAAATGATCAAAGCCAACACCAAAGTCCACCTCAACAAGGGTTTTTTCTACTAGCTTACTCTTACAGTCTAATAATATGGCATTGTCAAAAACTATTCTTGCAATTTTATTAATATTTGTTCTAGGATTTTCTTGCTGCATCATCGGCTCAAATGCTGTCCCAGTAACAAGTAAGGTTTCTACTAATTAGGGCGATAATTATGTTGATCATACTAACTTGTGATTGATTTCTTGTTTATTGTTGATGAACTAATTATAGTTAGTATTTGTGATTTTCTAGGAACAAAGAGTCTAATGCAAGAAAATCTTCCAAGATTTCAAGCTTCCATGAATTCTCATCTGGTATATTTTCATTCACACATTCTCTATTGTTGTCAGACTGATTTACTATGTTTCAATTCCCTGCTTTTTAGGCCTTGTTTGTTTTATACTTCGCATCAAAAACTGAAACTGAGAGTAATATCAAACATGCCATCAATTTGAATTTATACTAGAAATTAAGTGTGCGTTCTATTCACCTGATTTTCACTTATTTTTCCTGAACTTATCTTAAACATGTCATGTCATCATTGTACACAGCTTAAAGGTCGCATGTAGCGACCTTTATCATTTTCGATCTGAATCTATCTGAACTTGTTTGAACTTATCAAAACTTATTTTAGTTATAGATTGTATTTGGTCAACCCTTATTTTTCATGAACTTATCTTATCTGAACTTATTTTTTCCTGAAATAAGTGGAAATAAGGTGAACAGAACAAAGCATAAGTTTTATAAGTTGACAATAAAATCAAACTGAAAATTGAGAGTAATATCAAACACGCCATCAATTTGAATTTATACTAGAAATTGAGTTTTATAAGTTGGCAATAATATCAAACTGAAAACTGACAGCAATATCAAACTGAAAACTGACAGCAATATCAAACTGACAGGATATTGTAGAGGCAATGCAAGAGAGGACTTTCATGGAACAGCGAAAGCTGGCTGATGTCCAGCTCGAAGACTACCCTGGATCTGGAGCTAACAACCGCCACACTCCGGCCAGGCCTTAGTTTGAATGTTTGAGATGCATCCACGAGATGGTCCATGATATACTTCTAGCTTAGGAAGTATATATATTTTCATATGTATACTAATAATTTGTCGTACCACGTGATTTAGTAAGAACGATTGTACGTACGCAGTAGTATATGTAACGTAGTGATTTTTGTTACCACTAATATTATCATGTATGGTAATGCCTAGATACTAATATGTAGCATATGTACGTGTGTAAATATATGAAGTGATAGATATTAGGGAAATGCTATTACTTAATTATCAGCATATAATTGTTGCTGGTCGAGTCTAGCAAAGATATGTACTTGTTATCACAAGGTTATATAAACTTGTGCTGCTTTATTTGTTTGTTATCATAACTCATAAGCTATGAGAATTTTGTAATTGTTGCTTCATTTTATTGACAAA

mRNA sequence

TCATCATCATAATTACAACTTTTATTATTTGACTTTTTTTTTTTTTTTGTTGATATTGATTGCTTAGTCTAACCAAACAAACAGTCACCTTCCTTTAGCCCATTAGAAGAATGTATATAAATTGCACCACTTTGCCTTAAAAATGATCAAAGCCAACACCAAAGTCCACCTCAACAAGGGTTTTTTCTACTAGCTTACTCTTACAGTCTAATAATATGGCATTGTCAAAAACTATTCTTGCAATTTTATTAATATTTGTTCTAGGATTTTCTTGCTGCATCATCGGCTCAAATGCTGTCCCAGTAACAAGAACAAAGAGTCTAATGCAAGAAAATCTTCCAAGATTTCAAGCTTCCATGAATTCTCATCTGGATATTGTAGAGGCAATGCAAGAGAGGACTTTCATGGAACAGCGAAAGCTGGCTGATGTCCAGCTCGAAGACTACCCTGGATCTGGAGCTAACAACCGCCACACTCCGGCCAGGCCTTAGTTTGAATGTTTGAGATGCATCCACGAGATGGTCCATGATATACTTCTAGCTTAGGAAGTATATATATTTTCATATGTATACTAATAATTTGTCGTACCACGTGATTTAGTAAGAACGATTGTACGTACGCAGTAGTATATGTAACGTAGTGATTTTTGTTACCACTAATATTATCATGTATGGTAATGCCTAGATACTAATATGTAGCATATGTACGTGTGTAAATATATGAAGTGATAGATATTAGGGAAATGCTATTACTTAATTATCAGCATATAATTGTTGCTGGTCGAGTCTAGCAAAGATATGTACTTGTTATCACAAGGTTATATAAACTTGTGCTGCTTTATTTGTTTGTTATCATAACTCATAAGCTATGAGAATTTTGTAATTGTTGCTTCATTTTATTGACAAA

Coding sequence (CDS)

ATGGCATTGTCAAAAACTATTCTTGCAATTTTATTAATATTTGTTCTAGGATTTTCTTGCTGCATCATCGGCTCAAATGCTGTCCCAGTAACAAGAACAAAGAGTCTAATGCAAGAAAATCTTCCAAGATTTCAAGCTTCCATGAATTCTCATCTGGATATTGTAGAGGCAATGCAAGAGAGGACTTTCATGGAACAGCGAAAGCTGGCTGATGTCCAGCTCGAAGACTACCCTGGATCTGGAGCTAACAACCGCCACACTCCGGCCAGGCCTTAG

Protein sequence

MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQERTFMEQRKLADVQLEDYPGSGANNRHTPARP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo08177.1	Spo08177.1	mRNA

Homology

[Close]

BLAST of Spo08177.1 vs. NCBI nr
Match: gi|902228453|gb|KNA21107.1| (hypothetical protein SOVF_046290 [Spinacia oleracea])

HSP 1 Score: 177.2 bits (448), Expect = 1.300e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1

		  
Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE
Sbjct: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60

Query: 61 RTFMEQRKLADVQLEDYPGSGANNRHTPARP 92
          RTFMEQRKLADVQLEDYPGSGANNRHTPARP
Sbjct: 61 RTFMEQRKLADVQLEDYPGSGANNRHTPARP 91

[Close]

BLAST of Spo08177.1 vs. NCBI nr
Match: gi|731335001|ref|XP_010678508.1| (PREDICTED: uncharacterized protein LOC104894040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 106.7 bits (265), Expect = 2.200e-20
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1

		  
Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MAL+K++L + +I +LGFSC IIG NAVP TRTKSLM  NL  F+AS NSHLD VEAMQ+
Sbjct: 1  MALAKSLLRLFVIVLLGFSC-IIGINAVPTTRTKSLMHGNLASFRASRNSHLDAVEAMQD 60

Query: 61 RTFMEQRKLAD-VQLEDYPGSGANNRHTP 89
             +++RK+   ++L+DYPGSGANNRHTP
Sbjct: 61 GNILKERKMQQTIELQDYPGSGANNRHTP 88

[Close]

BLAST of Spo08177.1 vs. NCBI nr
Match: gi|645269296|ref|XP_008239934.1| (PREDICTED: uncharacterized protein LOC103338502 [Prunus mume])

HSP 1 Score: 63.2 bits (152), Expect = 2.800e-7
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1

		  
Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MAL+ T+L +L+IF LGFS  II  NAVPVTR  SL    +    A  N  +       E
Sbjct: 1  MALAGTLLHLLVIF-LGFSQLIIRLNAVPVTRIGSLQVHQI----AGNNQLVTTENNFYE 60

Query: 61 RTFMEQRKLADVQLEDYPGSGANNRHTP 89
          +T  E+    DV+L DYPGSGANNRHTP
Sbjct: 61 QTITERM---DVELHDYPGSGANNRHTP 80

[Close]

BLAST of Spo08177.1 vs. NCBI nr
Match: gi|703074802|ref|XP_010089913.1| (hypothetical protein L484_008601 [Morus notabilis])

HSP 1 Score: 61.6 bits (148), Expect = 8.100e-7
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1

		  
Query: 4  SKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQEN----LPRFQASMNSHLDIVEAMQ 63
          S+T+   +L+ VL FS  I  SNAVPVTR + LM  N    LP  Q +++  +   + ++
Sbjct: 3  SRTLFLQVLVIVLCFSHLIF-SNAVPVTRIRGLMHGNQAHDLP--QGTIHKQVTTEKILE 62

Query: 64 ERTFMEQRKLADVQLEDYPGSGANNRHTP 89
          E+T  E+    DV+L DYPGSGANNRHTP
Sbjct: 63 EKTVAERM---DVELHDYPGSGANNRHTP 85

[Close]

BLAST of Spo08177.1 vs. NCBI nr
Match: gi|823145167|ref|XP_012472456.1| (PREDICTED: uncharacterized protein LOC105789633 [Gossypium raimondii])

HSP 1 Score: 59.7 bits (143), Expect = 3.100e-6
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1

		  
Query: 11  LLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQERTFMEQRKLA 70
           LL+ +LG S  II SNAVPVTRT +LM  +    Q   N+HL  VE   +   ++ R  A
Sbjct: 109 LLVVLLGLSH-IIFSNAVPVTRTGTLMHGSQVH-QLQENTHLVTVEKSSDGEIIKGRMFA 168

Query: 71  DVQLEDYPGSGANNRHTP 89
           +  L DYPGSGANNRHTP
Sbjct: 169 E--LNDYPGSGANNRHTP 182

[Close]

BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQK7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046290 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.200e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1

		  
Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE
Sbjct: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60

Query: 61 RTFMEQRKLADVQLEDYPGSGANNRHTPARP 92
          RTFMEQRKLADVQLEDYPGSGANNRHTPARP
Sbjct: 61 RTFMEQRKLADVQLEDYPGSGANNRHTPARP 91

[Close]

BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F4Q4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g114650 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.500e-20
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1

		  
Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MAL+K++L + +I +LGFSC IIG NAVP TRTKSLM  NL  F+AS NSHLD VEAMQ+
Sbjct: 1  MALAKSLLRLFVIVLLGFSC-IIGINAVPTTRTKSLMHGNLASFRASRNSHLDAVEAMQD 60

Query: 61 RTFMEQRKLAD-VQLEDYPGSGANNRHTP 89
             +++RK+   ++L+DYPGSGANNRHTP
Sbjct: 61 GNILKERKMQQTIELQDYPGSGANNRHTP 88

[Close]

BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: W9QJD5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008601 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.600e-7
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1

		  
Query: 4  SKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQEN----LPRFQASMNSHLDIVEAMQ 63
          S+T+   +L+ VL FS  I  SNAVPVTR + LM  N    LP  Q +++  +   + ++
Sbjct: 3  SRTLFLQVLVIVLCFSHLIF-SNAVPVTRIRGLMHGNQAHDLP--QGTIHKQVTTEKILE 62

Query: 64 ERTFMEQRKLADVQLEDYPGSGANNRHTP 89
          E+T  E+    DV+L DYPGSGANNRHTP
Sbjct: 63 EKTVAERM---DVELHDYPGSGANNRHTP 85

[Close]

BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QQW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G097700 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.100e-6
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1

		  
Query: 11 LLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQERTFMEQRKLA 70
          LL+ +LG S  II SNAVPVTRT +LM  +    Q   N+HL  VE   +   ++ R  A
Sbjct: 8  LLVVLLGLSH-IIFSNAVPVTRTGTLMHGSQVH-QLQENTHLVTVEKSSDGEIIKGRMFA 67

Query: 71 DVQLEDYPGSGANNRHTP 89
          +  L DYPGSGANNRHTP
Sbjct: 68 E--LNDYPGSGANNRHTP 81

The following BLAST results are available for this feature:

BLAST of Spo08177.1 vs. NCBI nr
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
BLAST of Spo08177.1 vs. ExPASy Swiss-Prot
BLAST of Spo08177.1 vs. TAIR (Arabidopsis)

BLAST of Spo08177.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902228453\|gb\|KNA21107.1\|	1.3e-41	100.	hypothetical protein SOVF_0462...	[more]
gi\|731335001\|ref\|XP_010678508.1\|	2.2e-20	62.9	PREDICTED: uncharacterized pro...	[more]
gi\|645269296\|ref\|XP_008239934.1\|	2.8e-7	50.0	PREDICTED: uncharacterized pro...	[more]
gi\|703074802\|ref\|XP_010089913.1\|	8.1e-7	46.0	hypothetical protein L484_0086...	[more]
gi\|823145167\|ref\|XP_012472456.1\|	3.1e-6	51.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RQK7_SPIOL	9.2e-42	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8F4Q4_BETVU	1.5e-20	62.9	Uncharacterized protein OS=Bet...	[more]
W9QJD5_9ROSA	5.6e-7	46.0	Uncharacterized protein OS=Mor...	[more]
A0A0D2QQW7_GOSRA	2.1e-6	51.2	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo08177.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo08177.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33474	FAMILY NOT NAMED	coord: 1..91 score: 3.2
None	No IPR available	PANTHER	PTHR33474:SF6	SUBFAMILY NOT NAMED	coord: 1..91 score: 3.2
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..20 score:

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo06934	0.68	Barchart \| Table
Spo08339	0.67	Barchart \| Table
Spo22159	0.67	Barchart \| Table
Spo14558	0.66	Barchart \| Table
Spo19591	0.66	Barchart \| Table
Spo13643	0.65	Barchart \| Table