Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTAATCACACAATATCATCTCTTAATTTAATTTAAATTAATAATAAGGTCATCGGAGTCGTGTAGTCGTGTGTGTTGTTATGGGCTAAGTTCCAAGTTAGCGCCTCTGTAGTCTGTACTCTGTACTCGATCTGTAGTCCAAAAACAGCATGACCCCACACCAGCATAGTGAGCTACTGAGCTCTATTTAACCCCCTTTACTCCGCTCCCATTTTTCCACACCTCACACCTCACTTCTCAAAATTCTTTACTTTTCCTTTGCGACTAAATTAATTAAATTAAAGGAACCCAAACCATGTCTCGTGTTGTCCATCTTCTAGTTGTCCTCACCGTCTCCTCACTTGTATTTTACTCTACCATTGCCCATCCTCACGGCGGACATGGTTGGACAGAAGCCCACGCCACCTTTTATGGTGGCGGCGACGCCTCTGGCACCATGGGTAAGTTTGTAATTCTACAATATAACTAGTATAGTTCAAGTTAGTAAGATGGGTTTTAATTTTTGCAATTTGTGTTATTAATTTATGATAATGTTTAGGCGGTGCATGTGGGTACGGAAACTTGTACAGCCAAGGGTACGGCACAAACACAGCCGCGTTGAGCACAGCACTGTTCAACGGAGGGTTAAGCTGCGGCGCGTGCTACGAGATGCGGTGCGTGAATGACGCAAGGTGGTGTCTGCCGGGGTCAATAATTGTGACGGCCACCAATTTCTGCCCACCAAACAATGCGTTGCCAAACAACGCAGGAGGGTGGTGTAATCCTCCTTTAAGGCACTTTGACCTTGCTCAGCCTATTTTCCAGCAAATTGCTCACTACAAGGCTGGAATTGTCCCTATTTCCTTTAGAAGGTTTGTTTATTTAATTATCAACTACCGAGTACTTTACATGGTTTGTTTAATTACTTAATTAATTTCATTTTAACTGTAATTGCTCCCATCCTTTACTTTTCCTCTCTTTAATTAGTTAGACTACATATCTTTTTAACATTATCTTAAAAGGCATGTTTTATTATAATTAAGTCAAAAGATTACTAGTAGTCTCATCTTTTTAGCTAATTTCATGTTACTCTATACTCATACAAGTTTATATTTATATTTATGTGAGCAATAATTGTTTCATAAACTTGGCATGCATGTTGCATCATTCATGCATCTAAAAAGTCTCATATGTATATGTACACACCAAACTCCTAATTTCTTTTAAAGGAAACTTGATTGCATATAGAACTTGGCTTAGTCATGATTGAGATTGATTTTTATAATTGAAATTGTGCGATAACATAATTTGTAGAGGTATTTCCTCTATTTGAGAGTTCGATCCACTTATAAACCCAATAACAATTTTACATTAAAACGAACCGACAATAGTTATATAAGCCCAATAGCAATTCCATATTAAAACCAACTGACAATAGTCTTATAAGTCCAATAGCAATTCCACGTTAAAATCAATTGACAATAATGGAAGTAACTTTTCAAGATATTAAGATTAAGATATAAAAAACTTAATTGATTCCATGCATGCTTTTATTATTGCATAAGTGCCTGTCATAAAACTCTCTATCCACCTTGGAAAGGTAACACAAGGCATTTAACCCTAAAATCTAGAACAATTATATTTCAATTCTTTAAAGAAAATGTTAAAGTATAGTAAAGAACAAGGCATTTAATATAATCCTGTGTGGGTGGGGTGCAGGGTACCATGCATGAAGAAAGGAGGAATCAGATTCACAGTGAACGGTCATTCATACTTCAACCTGGTATTAATCACCAACGTTGGAGGTGCAGGGGATGTACATGCAGCTTCCATCAAAGGCTCCAAAACTAATTGGCAATCCATGTCAAGAAACTGGGGTCAAAATTGGCAATCCAACTCTTTTCTCAATGGCCAAAGCCTTTCCTTTAAGGTCACCACCAGCAACGGCCGCACCGTCACCGCTCTCAACGTCGCTCCTCCTACTTGGTCCTTTGGTCAGACTTACACCGGTCCCCAATTTTGACTCTTTTTTACTAGACCATAGTTCACTATAAAGTGTAGTGTTTTTTATTTTATTTTAAATAGTGTGGGGTCCACATTCCACAATAGTAAGGGCTAATTTTATTGTAGCCCTTATTATTAAAAGAAAATAAATGGAATTGGGCTTGTTTTTATCACATAAAGCCCATTTCATTCATTTTAAAAAATTTCAAGTATGGGTCATGGGTTATTATATTTCTGTCCTGGTATTATAATGGGACAGAATTAGGGCAGGGGTAGGCTTTTACCACCCGCCAATTTTCAAATTGGTAATTTAGGTTTGGGTTTAGTGTCTGTTTGTCTGTTGGAGTTGGTGTTTAAGCAAAATCAAGTGTAATCACTGCTTTTGCAGTTAAGATATGTACTTTGTGAGTGTGTTTCAAGTGTTAATTATATATCAAGAGATCTTGTTAGTTGTTATGTTATGATTGAAAGTCATTTACATTATTGTTAAT CTAATCACACAATATCATCTCTTAATTTAATTTAAATTAATAATAAGGTCATCGGAGTCGTGTAGTCGTGTGTGTTGTTATGGGCTAAGTTCCAAGTTAGCGCCTCTGTAGTCTGTACTCTGTACTCGATCTGTAGTCCAAAAACAGCATGACCCCACACCAGCATAGTGAGCTACTGAGCTCTATTTAACCCCCTTTACTCCGCTCCCATTTTTCCACACCTCACACCTCACTTCTCAAAATTCTTTACTTTTCCTTTGCGACTAAATTAATTAAATTAAAGGAACCCAAACCATGTCTCGTGTTGTCCATCTTCTAGTTGTCCTCACCGTCTCCTCACTTGTATTTTACTCTACCATTGCCCATCCTCACGGCGGACATGGTTGGACAGAAGCCCACGCCACCTTTTATGGTGGCGGCGACGCCTCTGGCACCATGGGCGGTGCATGTGGGTACGGAAACTTGTACAGCCAAGGGTACGGCACAAACACAGCCGCGTTGAGCACAGCACTGTTCAACGGAGGGTTAAGCTGCGGCGCGTGCTACGAGATGCGGTGCGTGAATGACGCAAGGTGGTGTCTGCCGGGGTCAATAATTGTGACGGCCACCAATTTCTGCCCACCAAACAATGCGTTGCCAAACAACGCAGGAGGGTGGTGTAATCCTCCTTTAAGGCACTTTGACCTTGCTCAGCCTATTTTCCAGCAAATTGCTCACTACAAGGCTGGAATTGTCCCTATTTCCTTTAGAAGGGTACCATGCATGAAGAAAGGAGGAATCAGATTCACAGTGAACGGTCATTCATACTTCAACCTGGTATTAATCACCAACGTTGGAGGTGCAGGGGATGTACATGCAGCTTCCATCAAAGGCTCCAAAACTAATTGGCAATCCATGTCAAGAAACTGGGGTCAAAATTGGCAATCCAACTCTTTTCTCAATGGCCAAAGCCTTTCCTTTAAGGTCACCACCAGCAACGGCCGCACCGTCACCGCTCTCAACGTCGCTCCTCCTACTTGGTCCTTTGGTCAGACTTACACCGGTCCCCAATTTTGACTCTTTTTTACTAGACCATAGTTCACTATAAAGTGTAGTGTTTTTTATTTTATTTTAAATAGTGTGGGGTCCACATTCCACAATAGTAAGGGCTAATTTTATTGTAGCCCTTATTATTAAAAGAAAATAAATGGAATTGGGCTTGTTTTTATCACATAAAGCCCATTTCATTCATTTTAAAAAATTTCAAGTATGGGTCATGGGTTATTATATTTCTGTCCTGGTATTATAATGGGACAGAATTAGGGCAGGGGTAGGCTTTTACCACCCGCCAATTTTCAAATTGGTAATTTAGGTTTGGGTTTAGTGTCTGTTTGTCTGTTGGAGTTGGTGTTTAAGCAAAATCAAGTGTAATCACTGCTTTTGCAGTTAAGATATGTACTTTGTGAGTGTGTTTCAAGTGTTAATTATATATCAAGAGATCTTGTTAGTTGTTATGTTATGATTGAAAGTCATTTACATTATTGTTAAT ATGTCTCGTGTTGTCCATCTTCTAGTTGTCCTCACCGTCTCCTCACTTGTATTTTACTCTACCATTGCCCATCCTCACGGCGGACATGGTTGGACAGAAGCCCACGCCACCTTTTATGGTGGCGGCGACGCCTCTGGCACCATGGGCGGTGCATGTGGGTACGGAAACTTGTACAGCCAAGGGTACGGCACAAACACAGCCGCGTTGAGCACAGCACTGTTCAACGGAGGGTTAAGCTGCGGCGCGTGCTACGAGATGCGGTGCGTGAATGACGCAAGGTGGTGTCTGCCGGGGTCAATAATTGTGACGGCCACCAATTTCTGCCCACCAAACAATGCGTTGCCAAACAACGCAGGAGGGTGGTGTAATCCTCCTTTAAGGCACTTTGACCTTGCTCAGCCTATTTTCCAGCAAATTGCTCACTACAAGGCTGGAATTGTCCCTATTTCCTTTAGAAGGGTACCATGCATGAAGAAAGGAGGAATCAGATTCACAGTGAACGGTCATTCATACTTCAACCTGGTATTAATCACCAACGTTGGAGGTGCAGGGGATGTACATGCAGCTTCCATCAAAGGCTCCAAAACTAATTGGCAATCCATGTCAAGAAACTGGGGTCAAAATTGGCAATCCAACTCTTTTCTCAATGGCCAAAGCCTTTCCTTTAAGGTCACCACCAGCAACGGCCGCACCGTCACCGCTCTCAACGTCGCTCCTCCTACTTGGTCCTTTGGTCAGACTTACACCGGTCCCCAATTTTGA MSRVVHLLVVLTVSSLVFYSTIAHPHGGHGWTEAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGLSCGACYEMRCVNDARWCLPGSIIVTATNFCPPNNALPNNAGGWCNPPLRHFDLAQPIFQQIAHYKAGIVPISFRRVPCMKKGGIRFTVNGHSYFNLVLITNVGGAGDVHAASIKGSKTNWQSMSRNWGQNWQSNSFLNGQSLSFKVTTSNGRTVTALNVAPPTWSFGQTYTGPQF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08184.1 vs. NCBI nr
Match: gi|902206028|gb|KNA15350.1| (hypothetical protein SOVF_099020 [Spinacia oleracea]) HSP 1 Score: 530.0 bits (1364), Expect = 2.200e-147 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1
BLAST of Spo08184.1 vs. NCBI nr
Match: gi|731334968|ref|XP_010678491.1| (PREDICTED: expansin-A10-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 466.1 bits (1198), Expect = 4.000e-128 Identity = 218/245 (88.98%), Postives = 234/245 (95.51%), Query Frame = 1
BLAST of Spo08184.1 vs. NCBI nr
Match: gi|747058369|ref|XP_011075523.1| (PREDICTED: expansin-A10 [Sesamum indicum]) HSP 1 Score: 424.9 bits (1091), Expect = 1.000e-115 Identity = 192/237 (81.01%), Postives = 216/237 (91.14%), Query Frame = 1
BLAST of Spo08184.1 vs. NCBI nr
Match: gi|77167275|gb|ABA62612.1| (expansin [Fragaria x ananassa]) HSP 1 Score: 423.7 bits (1088), Expect = 2.300e-115 Identity = 191/233 (81.97%), Postives = 211/233 (90.56%), Query Frame = 1
BLAST of Spo08184.1 vs. NCBI nr
Match: gi|672165353|ref|XP_008802577.1| (PREDICTED: expansin-A10-like [Phoenix dactylifera]) HSP 1 Score: 423.7 bits (1088), Expect = 2.300e-115 Identity = 196/244 (80.33%), Postives = 223/244 (91.39%), Query Frame = 1
BLAST of Spo08184.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R770_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_099020 PE=4 SV=1) HSP 1 Score: 530.0 bits (1364), Expect = 1.600e-147 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1
BLAST of Spo08184.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CB05_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g114530 PE=4 SV=1) HSP 1 Score: 466.1 bits (1198), Expect = 2.800e-128 Identity = 218/245 (88.98%), Postives = 234/245 (95.51%), Query Frame = 1
BLAST of Spo08184.1 vs. UniProtKB/TrEMBL
Match: G4XZX4_9GENT (Expansin OS=Breonia chinensis GN=EXPA15 PE=2 SV=1) HSP 1 Score: 423.7 bits (1088), Expect = 1.600e-115 Identity = 189/236 (80.08%), Postives = 214/236 (90.68%), Query Frame = 1
BLAST of Spo08184.1 vs. UniProtKB/TrEMBL
Match: Q1AEL7_FRAAN (Expansin OS=Fragaria ananassa GN=EXP4 PE=2 SV=1) HSP 1 Score: 423.7 bits (1088), Expect = 1.600e-115 Identity = 191/233 (81.97%), Postives = 211/233 (90.56%), Query Frame = 1
BLAST of Spo08184.1 vs. UniProtKB/TrEMBL
Match: A0A067KYL6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15624 PE=4 SV=1) HSP 1 Score: 422.9 bits (1086), Expect = 2.700e-115 Identity = 188/228 (82.46%), Postives = 214/228 (93.86%), Query Frame = 1
BLAST of Spo08184.1 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1) HSP 1 Score: 411.0 bits (1055), Expect = 9.500e-114 Identity = 186/246 (75.61%), Postives = 220/246 (89.43%), Query Frame = 1
BLAST of Spo08184.1 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2) HSP 1 Score: 408.7 bits (1049), Expect = 4.700e-113 Identity = 184/245 (75.10%), Postives = 215/245 (87.76%), Query Frame = 1
BLAST of Spo08184.1 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1) HSP 1 Score: 406.8 bits (1044), Expect = 1.800e-112 Identity = 183/226 (80.97%), Postives = 207/226 (91.59%), Query Frame = 1
BLAST of Spo08184.1 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1) HSP 1 Score: 380.6 bits (976), Expect = 1.400e-104 Identity = 181/246 (73.58%), Postives = 208/246 (84.55%), Query Frame = 1
BLAST of Spo08184.1 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 376.7 bits (966), Expect = 2.000e-103 Identity = 178/246 (72.36%), Postives = 202/246 (82.11%), Query Frame = 1
BLAST of Spo08184.1 vs. TAIR (Arabidopsis)
Match: AT2G03090.1 (expansin A15) HSP 1 Score: 408.7 bits (1049), Expect = 2.600e-114 Identity = 184/245 (75.10%), Postives = 215/245 (87.76%), Query Frame = 1
BLAST of Spo08184.1 vs. TAIR (Arabidopsis)
Match: AT1G69530.3 (expansin A1) HSP 1 Score: 407.1 bits (1045), Expect = 7.700e-114 Identity = 184/243 (75.72%), Postives = 218/243 (89.71%), Query Frame = 1
BLAST of Spo08184.1 vs. TAIR (Arabidopsis)
Match: AT1G26770.2 (expansin A10) HSP 1 Score: 406.8 bits (1044), Expect = 1.000e-113 Identity = 183/226 (80.97%), Postives = 207/226 (91.59%), Query Frame = 1
BLAST of Spo08184.1 vs. TAIR (Arabidopsis)
Match: AT2G40610.1 (expansin A8) HSP 1 Score: 380.6 bits (976), Expect = 7.700e-106 Identity = 181/246 (73.58%), Postives = 208/246 (84.55%), Query Frame = 1
BLAST of Spo08184.1 vs. TAIR (Arabidopsis)
Match: AT5G56320.1 (expansin A14) HSP 1 Score: 372.5 bits (955), Expect = 2.100e-103 Identity = 171/224 (76.34%), Postives = 192/224 (85.71%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08184.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08184.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08184.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo08184.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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