Spo05265 (gene) | SpinachBase

Overview


Name	Spo05265
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr5 : 11964658 .. 11965960 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCCAAATATTTAAACTCAACATGGACCTTAAAATATAAAAATATATATATATAAATTGTCACGCTCCAATTTGACGTCCGCCTAAAAGTAAAGCCCCCATCTTCAAATGTTTGATTTGTTCAACAAAAGCAAAAATCAAACAACCCCCAAATCCCAAATACTACGTTTAAGTTTGGAAGAAATAAGATGCCGTGTTCTTCAATGCGGGCAATTTCTTCTTAACTTCCTTCAACTTTCCTTATTACTTAACCCCGAATCAATTATCCTCCTAATTGCCCATTTAATTTCTTTCAAGTTTTCAGGTACTCATTCTTTCTCATCTTCTTCACCAGTTTATGTTTTTCTTGATTTTGCTTATAAATAGAGTAATTAAGTGTTCTCATTCAGGTTTTCAGTGTTAATTTCTTCTGGGTAATTGCAATTTTCCATCTTTTTTTTCTGGGTTTTGCTGCTGTTATTGATTTCTTCACTTAAAATTTGCGAAGTTACTGAAATCTGAATCTTTGCAGCATATATTATTACGGAGTAGAAGTTATTTTCAGTTTGCTGCTTTGATTTTCTACTGAACTGTTGATTGAAACTATGAATTGAAAATTAATTTTTAAAATTTTCAGTTTTGCTCTAAATCAAAACTTTGATCATATTGTTTAGTGGGTGTTGGTGATTTGATTGAAGTCATTTTAAGTCGAATCTTTTGATTACGTTGGTAATTCAAATTATTTTTTCTACTGTTTGAGTGTGTGTCTGTTTGTTGTTCTGATTCTGCCTTTATTAGGATCCGTATTTGAAGTATGAATTCTGTAACCGTATAGTATTACTATGATGACAGGTTATTGTTATAGCCTTGGATATACGATACACTCGGGTGTATAATGAAAATTGTCGAAATCGTTGATGTTATGAACTGGTGTTTCCCTTTATTGGTTTTTAGTTATATATTTTTTGGTGGCTTGGATCTTTGATGAGTCTATGGAATCTAGAGAAAGTTCAAATTAAAGTTAAAGGAACACTTTTATGTCGACCTTTCTTGATTGTTTAATTTTCTCACTATTGAGATCTTGCCTTGACCAAGTTGAAGGGTTTACTGATTCTTGTTTTTGAAGTTTCAATAGGAATCTGATGTTTTTTTATATATTTACTTGATTCTGTAATTGGATGCTTGTGTTTTGTATTTCGGGTTTAATGATTATTTTGTCATTGATATCCTATGGTTGTTACATCATATGCTGTTTGCTGTTGCTGATTCATTTTGGTATTGGGATAATTTGCAGAAATCTTGTACAGTCGTTTTGCCGTGTAA

mRNA sequence

CTATCCAAATATTTAAACTCAACATGGACCTTAAAATATAAAAATATATATATATAAATTGTCACGCTCCAATTTGACGTCCGCCTAAAAGTAAAGCCCCCATCTTCAAATGTTTGATTTGTTCAACAAAAGCAAAAATCAAACAACCCCCAAATCCCAAATACTACGTTTAAGTTTGGAAGAAATAAGATGCCGTGTTCTTCAATGCGGGCAATTTCTTCTTAACTTCCTTCAACTTTCCTTATTACTTAACCCCGAATCAATTATCCTCCTAATTGCCCATTTAATTTCTTTCAAGTTTTCAGAAATCTTGTACAGTCGTTTTGCCGTGTAA

Coding sequence (CDS)

ATGTTTGATTTGTTCAACAAAAGCAAAAATCAAACAACCCCCAAATCCCAAATACTACGTTTAAGTTTGGAAGAAATAAGATGCCGTGTTCTTCAATGCGGGCAATTTCTTCTTAACTTCCTTCAACTTTCCTTATTACTTAACCCCGAATCAATTATCCTCCTAATTGCCCATTTAATTTCTTTCAAGTTTTCAGAAATCTTGTACAGTCGTTTTGCCGTGTAA

Protein sequence

MFDLFNKSKNQTTPKSQILRLSLEEIRCRVLQCGQFLLNFLQLSLLLNPESIILLIAHLISFKFSEILYSRFAV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05265.1	Spo05265.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo05265.1 vs. NCBI nr
BLAST of Spo05265.1 vs. UniProtKB/TrEMBL
BLAST of Spo05265.1 vs. ExPASy Swiss-Prot
BLAST of Spo05265.1 vs. TAIR (Arabidopsis)

BLAST of Spo05265.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo05265.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo05265.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo05265.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016556	mRNA modification
biological_process	GO:0035265	organ growth
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0019760	glucosinolate metabolic process
biological_process	GO:0032984	protein-containing complex disassembly
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004222	metalloendopeptidase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01928	0.75	Barchart \| Table
Spo15890	0.73	Barchart \| Table
Spo08407	0.72	Barchart \| Table
Spo23327	0.71	Barchart \| Table
Spo17668	0.71	Barchart \| Table
Spo15702	0.70	Barchart \| Table
Spo00214	0.70	Barchart \| Table
Spo15266	0.70	Barchart \| Table
Spo00877	0.69	Barchart \| Table
Spo02396	0.69	Barchart \| Table
Spo26975	0.68	Barchart \| Table
Spo19288	0.68	Barchart \| Table
Spo18184	0.67	Barchart \| Table
Spo11478	0.67	Barchart \| Table
Spo04200	0.67	Barchart \| Table
Spo10835	0.67	Barchart \| Table
Spo14914	0.66	Barchart \| Table
Spo23076	0.66	Barchart \| Table
Spo15365	0.65	Barchart \| Table
Spo10987	0.65	Barchart \| Table
Spo02598	0.65	Barchart \| Table