Spo10406 (gene)

Overview
NameSpo10406
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 18565421 .. 18568599 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATAATCTTTCTCTCTCCTCTAAGTTCCTCCCTCTGTGAAACCCTAAAACTTGAAGACTTCAATGGCATACATTCACGGAGGCGGCTAATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGTTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGTAATTCATTTCTGCTATTTCATATATTATCAATTTGATTCCAACACTAAATCAGTTGAATTTCTAATTGCGATTCTAAAAATTGAAGATTTAAACTTGATATAAATGTGTAGGAGATGGTAAATTGGTAATCTTGATATAAAAGTAGCTGCTGCTTATTATTTTAAGAACTTGATTCAACGAAATGTTCATGGAGAAGGTCGATCTGGCTTTTATAGTCAGGAATTTAAGGAGATGCTATTGAAAACTGGGCTTGGTATTGAACCCATTGAATTGAATTGTTTGATAATTTTTTCTCTAGGAAATTTGGGTTTGTTCTTAATTCGGAGTTGTTTGTGGGTGATGGGTTTTGTTTCGATAATTTGGAGATAGATGTAGAGCTCAAAATCCTAACAGAGGAATCTCTAGAGATTTATTTTCGTTTTGTGATTATTTTCAGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGATCTGATTAAGGTGATAATCAATTAAAACGCAATATAGTTTATTTTAATTTCTTGCATATTTCAGTTTAAGCGCACTGATTATGCTTTGTTAATTAGAACCCTATTAATTTCTTGATTCTTTAACCTTGGAATGTTTATGCTTTGTTTGAACTCTATTAATTTTTGGATTCTTTATTTTTGCACTGATTATGCTTTGTTAGAACTCTGTTAAGGGTTACAGTAATGTCGAATTTATCTTTATAGCCCAGACTCGAGAGTATGTGTATGAAATTGATAATTGTCCGAAATTTTAATTTGTTTATTTCCGGTAATTCAAGGAGGCTCGATGCGTACATATCCGTTATAAAGCTAGGGAGATCGAGGGTTCATGATTTTTTTGTTTGATTTGGTTAAATCTTAGAAATTTGATAAGTTATCTACAATTTTTTTTCCAGCTGCAATGGTACGCTATGAAATAACATGAAATTTCCTTGGCCTTCAATTCCTGCAGTTACTATACCGGTGAGAATATAATTCTTTTACCTTTTGCATTACTTATGTAAGTGTGCGGTTAATCCTGTCGCTCTTCCCTGAACAAATTCAGTTACTTTTGTAGATTGGATATGATGAAGCAGGGTTGCCTATCGGTTACAATTTATCGGAAAACCTTAGGCTGAAGCAACATTAATTCACATGGCTTCTGCAGTCCAGGTAAACCTTCATGTTTTCAAGAACCCGTCTTGAAAAACTGTTACGGTCTTGCCATGATTTTACCAAAATAACTTTCTCATAATTGTCTCCTTCCAAATTTATCTCTGAACTTTTGAATTAATTTTTTGCTTTCTGATTTTTTGCGTGATTATTTTCTTACCTTTGGTGTATTTATAAGGTGAATAAATTGTTCAAAGGTGCACCATTGCAGCATCTTAAGAATGTCTCAAAATCTGACTCCAAAAATGACATCTTACTTCGGAATATGCTTACAGGTCGATCGGACTTGGGATAATCATGCACTGAGAGAACCAGCTTTAGTTGCTCACTTAAAGTAATCCAGGATTTTTGGCTACGTTATTGAGAAACCCAATTTCTTCACTTTTACTTGGTTGGCAAAATTAGAATCACATACATCTTGGAGCATTCTGCAACTACTGGTAAACAATTCCTCACTCACAACTCATTACCTTCCATTTGACAAAATTTATGACACGGAGGATTTTATTTGAATCAATGCAAACTTCACTTAGTAAAAGGGCTCCGTTCACTTATATCAAGCTGAAAGTTTAATTTTGACACGAGTGAACTATGATTTTGCCGGGTTAGTATTATTTACTGTATTTTGCCGTTCAATTTCCCAATTTCAATTTTTAATGGGTGATTAATAGTTGTGAATATATGTGGTTAAGTAAATAATAATAACTCAATTGGTTTAATTTATTTATATGAATGATTGAATATAGACAGAAAAGGGTTTACTACTTCACATTAGAATCCTTATGTAATAGAGATGTTTCTACATTATAATCCATCTTATTTAGATCACAAAACAATCTGAATTAGCAGATCATACAGTCTCTAATAACCAAGTAGAAGCAAAACAATTGGGCTGTTGAATTCAAATATGATCATCCTAAATTTATTTGTTGCTTAAAGCCTACTCTTAATCCCTAGGCCGTTGTTTCTGATGTTTACTGTTCAATTTTTTACTGCATATTTGTTTCAATCATTTGCTGATGATAATTTCGGATTTTAGCCTAATATAAAATCCAATCTAAAAATAAAATTGAATAATGTAAACAGTTTAGCCTTAATTTTACTACCATTTGCTTACATTGAGAATATTGTACATCATGTTGGACCTGATGATCATCCTTAATTTAGGCTAAACAGGTAACTAAAACGGAATATATCAGTACTTGGTTTTGTGACAATATGTTTCAATCCTATCTCTTCATGTTGGTAATCTAAACCTCAATTAAGGTTATCATTAAGCAAACTGATAGGTCGTGATTAAAAAATTCTATCTAATTCATCTTTGAACTCAGCAGAAACACATTGCGTGCATATCTGGCTTTAAATATTACAAAACAGAGAAGAGCAAGGTTTTATTTTGTAATTTTTATTCTTTCTTCCTCTGTCTTTTTTCAAGGTTCTCAAAAGGGACATTCCATGGGAGACATACATGATGACCAAGTTGATCACTGGGACAACCCTTCAACTTTTAAGGCGTTATGACAAGAAACCTGAGAACTAGAGAGCTTCCTTGCTGGATGATGTAATTTTTCATCTTTGCTTCTTTCTCGAAGTATAGGCTGTTGAAGAATTTTAGCTACAATCTTTTTGTCAAATGCATCCAGTGACACAAAATCTCTTTTAATTTTGTTGAGATCTGTCATGACCTACCCCGTTCCTAA

mRNA sequence

CCATAATCTTTCTCTCTCCTCTAAGTTCCTCCCTCTGTGAAACCCTAAAACTTGAAGACTTCAATGGCATACATTCACGGAGGCGGCTAATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGTTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGATCTGATTAAGCTGCAATGGTACGCTATGAAATAACATGAAATTTCCTTGGCCTTCAATTCCTGCAGTTACTATACCGATTGGATATGATGAAGCAGGGTTGCCTATCGGTTACAATTTATCGGAAAACCTTAGGCTGAAGCAACATTAATTCACATGGCTTCTGCAGTCCAGGTCGATCGGACTTGGGATAATCATGCACTGAGAGAACCAGCTTTAGTTGCTCACTTAAAGTAATCCAGGATTTTTGGCTACGTTATTGAGAAACCCAATTTCTTCACTTTTACTTGGTTGGCAAAATTAGAATCACATACATCTTGGAGCATTCTGCAACTACTGGTTCTCAAAAGGGACATTCCATGGGAGACATACATGATGACCAAGTTGATCACTGGGACAACCCTTCAACTTTTAAGGCGTTATGACAAGAAACCTGAGAACTAGAGAGCTTCCTTGCTGGATGATGTAATTTTTCATCTTTGCTTCTTTCTCGAAGTATAGGCTGTTGAAGAATTTTAGCTACAATCTTTTTGTCAAATGCATCCAGTGACACAAAATCTCTTTTAATTTTGTTGAGATCTGTCATGACCTACCCCGTTCCTAA

Coding sequence (CDS)

ATGTCTCGGCTATTGCACCATGACTCCAGCACGACCCTGCAAATACGGAAGGGTTTCGACGGGTGGTCATCTTGGGGGATCTGGTTGTTCGATTTGCGAGTGGAGGTTGACGAAGCGTTTATGTCGCCTCAGATTTCCCTCTCTCTCTCCTCTCCCATGTCAACGGCATGTAGTTCTGCCATGGAAATTCCGCGACCTTCTACATGGAAATCGAAGCCTTCCAAACACAAAAGTGGTGAATTACTGCAATTAAGTTTATGA

Protein sequence

MSRLLHHDSSTTLQIRKGFDGWSSWGIWLFDLRVEVDEAFMSPQISLSLSSPMSTACSSAMEIPRPSTWKSKPSKHKSGELLQLSL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10406.1Spo10406.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo10406.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10406.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10406.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10406.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo183990.93Barchart | Table
Spo044920.66Barchart | Table