Spo10401 (gene) | SpinachBase

Overview


Name	Spo10401
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr5 : 18902913 .. 18907533 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGTGAGGACGATGATCCTTGCCCCAACCGATGCCGCGAGTGGACTCAAGGTACTGCTGCACAAGGTGGCGACACTTCTGGAGGTGGTTAATACCCTCAACACGGTAACACCACCGGAGTTTCTCACGGAGGATCTTAGCTGTTTCGATGTCGATCCATTTCTCTCGAACCAAATGCTCCCGCATTTCAAGCATTGCAACCGGGTCCTTGTATGGGTGCGCGGGATCGAAGTCGTCCGGCGGTGACTCGTCGAACTCTACCTTGAAGCTCTTTCGACCCATTTCGCCTCTCTTGCTTTCTCAATTCTCTCTCTCCTTCCTTCTTGCTTTGCAGTTTGCAACTGTGAAAGTCTGAGGGAATTGGGAATTAAGGGCGTGATTTTGATAGAGGCCCAATTACTCCCTTTCAGTAGAACTGTCAAACCAGATAGGATAATGGTCTAGTCGGGTTCAAGTTATTAGAGAAGTTGACTTAAATTGGGTCAGTGCTCAATGAAGATTGCACATTGGGCCCTTAGATCATTAAAATGAAAATTAAAAGTGATAAATAAATATGGATAATGGATTATGATTTTAAGGTTGTTAAATGGGTCATTGGATCGGTTATAAACGGCTGGAGTCACGTTAAAATTGTTTAATGTTGTGTTAATATTTCTATTCGGATCGGTTCATATGACTTCGATTTCGGTGAGGTCGGGTTATAAGTTGTTTCGGGATTGAACTCGGTTTCGGTTCGGGTAACTCCAATTCGAGTTAACCTCGAGTTTTTGAATGGAATTGGTTCGAGTTTAAAACGGTTTTAGTCGGTTTGATTTGGTTCGGATTGAGTTTGGTTCGGGTGTATGTTGGATTCGGGTACTATTGTACTGATTTACTTTGGGTACCGGGGTCATTTCCGGATCGACTAAGTCTTGGATTCAGGTCAAGTATGGATCGGTGAGTCTCGGGTTCGGGTCAAGCTTAGATAAAATGTACTCTGATACGGTCAATTACGGATTGAGTTTGTGTTTCAAGTTTAGATCGGGTTAAGTTTATAATCTTGTGTTCTATTAATTGAGTTACTCTCGAGGTCGCGATATAATTCATATCACTTTATTATTCTATGATTTCGTGCCAAATAAAGATATTTTAGATTTCTATTACTTTGTCTCCAGATTATTTAACAGGAGTATAAATAGAACTTAGAATAAATTGAGCATTTTTCTTGAAACAAGATAATGTCCAAAGTAGTTCCCAAATGGAAATGAATTTATTAATAACCGTGATTTATGAATAATGCAAATAATATAATATTTTCGTAATTAAACAGGTAAAAAAAGGTGGAAAAGTGTATTAAATGAATAAAATTTGACATTAACTAAATATAAATTGAGTTTAGATGTATATCTTAAACGAAAATGATAAAGGTCGCAACATGCAACCTTTAAGCCGTGTCACAATGATGACATGACATGCTTATGTGTCATAATTTAAATTGAAAATTAAAGTATTTAACTTATACTATATAACCTATTATATGTGTTGTAGGAAAATCTTAATATTCTAATTTGTTTCCTTCTTTATAATCACTACCTTGTTACATATTTTCCTAGTAAAAATATTGCATTCATAGTAAAAATAGTCTGATGACGCATAACCTACATACGTGGCCCCTATATGTACCAATTAAACTCCGACACGTAAGATTGTTGTCGCAACTTGCGACCTTTATCATCACCCTATCTTAAAAGTATATTTATTTTTACTATTATGCCATGTGATTTGTACTATTTATCAATAACAATTATTGATTTGGAATCACCCGTTCCCGAATGTTGAGTATAGCATTTTGCATTTAACGAACACAAATAATTTCCATCATCTATGGCAATATGTTACACTACACGTCTACACCTACTAATGAAATAGTGTTACATAACTATTTAACTTTTTTTGAAACTAAAAATTTATTGATAAAAAGTCATACGCCATCAACAAAAGAGATACTCCCTCCGTCCCGGAATACTCGACCCGGTTTGACCGGCACAGAGTTTAAGGGACTTGAATTGACTTATTTAATTTAATAGGTAGTAGTTGATAGTGGGGTATTATTTTAATGTAGTTAGTGGGAGGTGGGTTAAGAGGTGGGGTTGGGGGAGAGTAGGGGTTGAATTTTTAATTATTTTTGTATGGAGTAGGGGGTAGGTGGGTTAATAGGGGTGGAGTGAGAAATAATATAATATTGTTAGAATATTTCCATTTTTAGAAACAGGTCAAGTATTAAGGGACGGCCCGATAAGGAAAACATGTCAAGTATTCCGGGACGGAGGGAGTACTCCGTATGCATCTATGAAATACGTAACAAACCGAATCAAATAAAACTCGTTTTCTGCAAAACTACGATTATTGCACGTCGAACATCTTGTATACTTTATAACACATCGTTGTTTGATACAGCATTCAACGAGGAGGTCTTTTGATCTGTTGTAGTTTTGATATTGAATTAAATCAGATTCAATTGATTGTAAGCTTAGAACTGACATCTGTTGCGACATCACACAAATCTTCATCGATGAATCAATTTCTCCTGCATAATTAAATAATACACCAGAAATTTAGGTTCCTCTAACCCAAGACAAATTCGCCCTGAAATGAGAAGTAAAACCCTGTCTTTCGAGGAAGAACAGTTCCTCGCACAAAGAGGAAGTATTATTAGAATCCTAAAAAACAAATAAAATTAAAGAAAAGAACAACAAAATAAAAAGATCGGGGTTTCCCACGATAAAAAATCGATGGAAGCCCCTTCGAAATTCACTAATGGAGGCTAGGGTTTGAGAGAGGGAGAGGAGGGAGAGAACGACTCCTTTAACTATAAGGATAAATTGTTTTTACCAACTAAAAAATCGAAAAATTGATTTTACCATCTAAAAACTAAAATTTGTATTTACCACTTTAAAAAAATTTAAACTTGTTTTTTACCACCTAGCTGAAAACGGAAAAATAGATGAAACGTTTATGAACTACTTCCATTCCTTAAAGTTTTTACACTTACTATTTGCACAAAGTCCTATGCAATATTTAACCACCTAATATATCCAATTCTATCTGTGAAAAAATTATAGAAATTGATATTCTGAAAACATACCGAGATCAATCTAACATAATCTTACATGATAACATTTTAATGTATATGATAGCGAAAATTTTTGGTCAAAATTTTCTTACTTTGGACATATTTTTAAAGAGTAAAAACTTTCGCAAACGGAGGAGGTATATCATTGAAACGGGTGGGGTTAAACCATTGCACACTACAAAAATTGCCAATTCATTTTCCCTCTATTAAATTGCCAATTCATTTTCCCTCTATTATTTACGTAGTTAACTATGTTCGATGTCATGTTACAAGTTTGCACTCCTACCGTCCTACGTTTGTAATCCCCTTAACAAAAAAACACCCTTGCTGACGTGGACGGTATGGTGGGAATTAACTTAAAAAGAAACGTATTTTGAAAATTATTGAATTTTTATGCAATATTGAAGGAAATCGCTGTGGTAGAGTGGTAGCTCATTTTGTTTTTTTCCCTCCACATTTTCATTTAACTTCCCGCCATGTCAGACTGTTTCCAAGAAAGTTGTTAGACGAAATGAAGAAAGTGGGGTGTCTTAACTCAAAAATGTTGGTTAATAAAATCAACAATTATTCAAAAATTTCAACGGTCTCCAATTTGTTAATTTCCTACAACAAAGGAATGCCGTTTACATCTCCTCATGTTCTCATCATACACCCACGCCACATCATCTTCCATCTTTCTCCCACCTTTCTTCTGGTATTAACAATATTTTCTCCTGATTTTTTTCCAGATTCTGCATGTATTTTAGCTAAATATTTGTCATACCCCCCTTTTTTTTGGGTTATTTGATCAGACATTGTTAATCAGAAGTAAGTTTTATCTAAGATTATTGTTATTTTGTTGGGGGGTTTTTGGCATCATCTTTATGTTTGTTGATTTGGGTATTTGACTATTTTTTTCTGCTGTGCAAAAAAAAAGTCAATTGGGTTTTGCCTACCAACTGTTCGATGAAATGTTACTTGTTGGTTTTTGGATGATAGAATTGATCTTGATACCCAGATTTCGACTTTCATGTTTGAGTATGTGTTGAATTGCTTGTACAATGAGGGTAGATGTTGTTCATAAGGTCTCTTCTTGGAAATGGTTACGTCAAACATGTAGAAATCGACGTGTTTGCTTCGTTAAATTGTGTGCTTGACATAGTTGTATTATGTCATATGATTTCTCAACTGCTCAATGTTGAGGATGAGCTATTCCTTGATTGAGTAATCAATTTGTAGACAATTTTCCTTCTGCTAGAATTTACAATACTATATGAAGGCGATATATATAGATTAGTTTCTGTTCTCGGTTTAACTAGTTTTTCCATTGCTTTGATTCATTTTGATATGCTTCAAGAATTGCTGTTGCTGGCAAGTTTTATTGATAGATTTCAACAGGTTGTAATTGAGTATTGCTATTTTTTTTTTATGTAGGGAGTTGCAATTAAGATCCATCTTCGAAGACAACTGAATCATAATCCATATGCTTTGTTATTGATTCCCACTGTACCTGAATTGATATAG

mRNA sequence

ATGGAGGGAGTGAGGACGATGATCCTTGCCCCAACCGATGCCGCGAGTGGACTCAAGGTACTGCTGCACAAGGTGGCGACACTTCTGGAGGTGGTTAATACCCTCAACACGGTAACACCACCGGAGTTTCTCACGGAGGATCTTAGCTGTTTCGATGTCGATCCATTTCTCTCGAACCAAATGCTCCCGCATTTCAAGCATTGCAACCGGGGAGTTGCAATTAAGATCCATCTTCGAAGACAACTGAATCATAATCCATATGCTTTGTTATTGATTCCCACTGTACCTGAATTGATATAG

Coding sequence (CDS)

ATGGAGGGAGTGAGGACGATGATCCTTGCCCCAACCGATGCCGCGAGTGGACTCAAGGTACTGCTGCACAAGGTGGCGACACTTCTGGAGGTGGTTAATACCCTCAACACGGTAACACCACCGGAGTTTCTCACGGAGGATCTTAGCTGTTTCGATGTCGATCCATTTCTCTCGAACCAAATGCTCCCGCATTTCAAGCATTGCAACCGGGGAGTTGCAATTAAGATCCATCTTCGAAGACAACTGAATCATAATCCATATGCTTTGTTATTGATTCCCACTGTACCTGAATTGATATAG

Protein sequence

MEGVRTMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHFKHCNRGVAIKIHLRRQLNHNPYALLLIPTVPELI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo10401.1	Spo10401.1	mRNA

Homology

[Close]

BLAST of Spo10401.1 vs. NCBI nr
Match: gi|255631026|gb|ACU15877.1| (unknown [Glycine max])

HSP 1 Score: 70.5 bits (171), Expect = 1.900e-9
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1

		  
Query: 6   TMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHF 65
           T +LAPTDAA GL++L+ +VA LLEVV+  + V P E L  DL   D+DP L + +LPH 
Sbjct: 36  TTVLAPTDAAGGLEILVDEVAALLEVVDAFDAVAPSELLPNDLGLLDLDPLLPHDVLPHL 95

Query: 66  KHCNRGVAIKIHLRR-QLNHNPYALLLIPTVP 97
           +H +R   + + +RR ++       L IP +P
Sbjct: 96  QHRHR---VLVRMRRIEIVRRRLLELNIPLLP 124

[Close]

BLAST of Spo10401.1 vs. NCBI nr
Match: gi|388511367|gb|AFK43745.1| (unknown [Lotus japonicus])

HSP 1 Score: 65.9 bits (159), Expect = 4.700e-8
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1

		  
Query: 7  MILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHFK 66
          MILAPT+  SG KVL++K+ TLL+VV+T + V P + L  DL   D+DP L + + PH +
Sbjct: 1  MILAPTNTTSGFKVLVNKMFTLLKVVDTFDAVAPTKLLPNDLGLLDLDPLLPDDVFPHLQ 60

Query: 67 HCNR 71
          H +R
Sbjct: 61 HRHR 64

[Close]

BLAST of Spo10401.1 vs. NCBI nr
Match: gi|217071134|gb|ACJ83927.1| (unknown [Medicago truncatula])

HSP 1 Score: 62.8 bits (151), Expect = 4.000e-7
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1

		  
Query: 6   TMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHF 65
           T I  PT+ +  LK+L HK+ T L ++N  N +TP +  T +L  FD++PF +N + PHF
Sbjct: 48  TTIFPPTNPSCRLKILFHKMTTFLMMINPFNPITPTKLFTNNLRFFDLNPFFTNNVFPHF 107

Query: 66  KH 68
           +H
Sbjct: 108 QH 109

[Close]

BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HAK2_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.600e-10
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1

		  
Query: 5  RTMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPH 64
          RT +LAP + A  +K+LL+KVA LL++VNT +TV P E  TEDL  F+VDP L +QMLPH
Sbjct: 5  RTKVLAPPNTAGCVKILLNKVAALLKMVNTFDTVAPTELFTEDLGFFNVDPLLPHQMLPH 64

Query: 65 FKHCNR 71
           +   R
Sbjct: 65 LEESYR 70

[Close]

BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Match: C6T2L1_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-9
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1

		  
Query: 6   TMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHF 65
           T +LAPTDAA GL++L+ +VA LLEVV+  + V P E L  DL   D+DP L + +LPH 
Sbjct: 36  TTVLAPTDAAGGLEILVDEVAALLEVVDAFDAVAPSELLPNDLGLLDLDPLLPHDVLPHL 95

Query: 66  KHCNRGVAIKIHLRR-QLNHNPYALLLIPTVP 97
           +H +R   + + +RR ++       L IP +P
Sbjct: 96  QHRHR---VLVRMRRIEIVRRRLLELNIPLLP 124

[Close]

BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Match: I3SU03_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.300e-8
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1

		  
Query: 7  MILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHFK 66
          MILAPT+  SG KVL++K+ TLL+VV+T + V P + L  DL   D+DP L + + PH +
Sbjct: 1  MILAPTNTTSGFKVLVNKMFTLLKVVDTFDAVAPTKLLPNDLGLLDLDPLLPDDVFPHLQ 60

Query: 67 HCNR 71
          H +R
Sbjct: 61 HRHR 64

[Close]

BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Match: B7FGP8_MEDTR (Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.800e-7
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1

		  
Query: 6   TMILAPTDAASGLKVLLHKVATLLEVVNTLNTVTPPEFLTEDLSCFDVDPFLSNQMLPHF 65
           T I  PT+ +  LK+L HK+ T L ++N  N +TP +  T +L  FD++PF +N + PHF
Sbjct: 48  TTIFPPTNPSCRLKILFHKMTTFLMMINPFNPITPTKLFTNNLRFFDLNPFFTNNVFPHF 107

Query: 66  KH 68
           +H
Sbjct: 108 QH 109

The following BLAST results are available for this feature:

BLAST of Spo10401.1 vs. NCBI nr
BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
BLAST of Spo10401.1 vs. ExPASy Swiss-Prot
BLAST of Spo10401.1 vs. TAIR (Arabidopsis)

BLAST of Spo10401.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|255631026\|gb\|ACU15877.1\|	1.9e-9	42.3	unknown [Glycine max]	[more]
gi\|388511367\|gb\|AFK43745.1\|	4.7e-8	48.4	unknown [Lotus japonicus]	[more]
gi\|217071134\|gb\|ACJ83927.1\|	4.0e-7	41.9	unknown [Medicago truncatula]	[more]

BLAST of Spo10401.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0V0HAK2_SOLCH	1.6e-10	54.5	Putative ovule protein OS=Sola...	[more]
C6T2L1_SOYBN	1.3e-9	42.3	Putative uncharacterized prote...	[more]
I3SU03_LOTJA	3.3e-8	48.4	Uncharacterized protein OS=Lot...	[more]
B7FGP8_MEDTR	2.8e-7	41.9	Putative uncharacterized prote...	[more]

BLAST of Spo10401.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo10401.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0071806	protein transmembrane transport
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009853	photorespiration
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01715	0.73	Barchart \| Table
Spo05949	0.73	Barchart \| Table
Spo26994	0.72	Barchart \| Table
Spo08172	0.72	Barchart \| Table
Spo11679	0.70	Barchart \| Table
Spo15902	0.68	Barchart \| Table
Spo20284	0.68	Barchart \| Table
Spo17591	0.66	Barchart \| Table
Spo18874	0.65	Barchart \| Table
Spo01398	0.65	Barchart \| Table