Spo09420 (gene) | SpinachBase

Overview


Name	Spo09420
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr5 : 24940965 .. 24942501 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCATGACTTCCTTCAAATCCCAATTTCTGATAAATCCATTGAAACCATCACAACCAACAGCAGCAGCAAGAAATTCATGGGTGGTCCAGTGTCCTCCTCAGAAGAAGAGGTTTACAGTGAAGGCGGTATCAGGAGATTTATCATCTGATAGCACCACTTATTTGATTGCTGGTGCTGCTGTAGTTGCTCTGCTTGGTACTGCCTTTCCCATCATCTTTTCCCGCAAGGATACGTATGATTTCTTCCCATCCCTTTAATTTTTGTTTATTATACATTCGCAAATACTATATATAACTCATAAATATGTGTATTAATAATAGTTGCCCAGAATGCGATGGTGCTGGTTTTGTAAGGAAATCAGGTGGTGGCGCGCTGAGGGCAAATGCAGCTCGCAAGGATTTAGCTCAAATTGTATGTGCTAACTGCAATGGCCTCGGCAAGCTCAATCAAGTCGACAAATAAATCACCACCACCTACATAGTACATACATTATTAGTTCCATCTTTGGATTAACTTACAGTAGACCAAACTTTGGAGGTCATATTCCCATAATAATCTTAATTTATTCAATTAAGAATTGTATTTTTAGATACTTTCCGGCACAATTTGTAAGTGTTAAATTTCAATGGACATTATTGTAAGAATATGACTCCAAAGTTCAGATGTTTTTAGAGTTAAATCAATTTTGGGAATAATATATAAAGAATTGTCCACAAGTTCCAATTATATATCCATTTTAGTATTACCTTCTGATAAATTTGTCCTACTGTCATGCATATTGTTGTTTGAAGTTGAATGATCGTTTTATTTGCTTATAAATACACCACATTTTATGATAAACTTTGAATTCTAGTTCAATCATATTATAGAGATGACACTGTTCATGTATACTTCAGTCCCTGAACCATTAAAATACAGTTCAATATATACTTTGGAGAAATATATGAAAGTTTAGTTCAAAGTTTTGCCCTAGGGCGTGTTGTGACTGTAACATAAAACCTCCAAATACTTGGAGATGGCTATATTGTGGTGGAAAACAAAACGCGAAACATCAATAGGATACTTTTCATTGTAGAAGAGAGCGCAGTCAGTGTCTGAGGTGTGACAGTGTGTCAATGCAGTCCATCTTATGATCAAAACAAGCATTCTGCTCTTAGTTTCAATGCTCTTTCATGTGATCAGAAGCTTAAGTGCTTCATTATCAAGCAGACAACAATCTGCATTAGGATAGGATCAGATTTCTAATAATAGAATTGCTTTTTGACTTTAATGAAAGATTGAAAGTTACCACGCAAATGCTCTTACTCCTACGTTTGAGTTATTACCCAAAGGTTATCACTGCTTTGAACGTACACCCAAAATGGAATTATAATAACCTAATAGTTAAAAAGGTTTTGCTGGAAGAACATAGGTTTTTGGGAAATTTTCCTTAATTCTATAAGTTAAAAGTAAAAAATAAAAATAAAAATAAAAATAAAAAAAGCTATACAAGCTACATTGTCAATTTGATGAGAAGTTGACATGTCAAAG

mRNA sequence

ATGGCATCCATGACTTCCTTCAAATCCCAATTTCTGATAAATCCATTGAAACCATCACAACCAACAGCAGCAGCAAGAAATTCATGGGTGGTCCAGTGTCCTCCTCAGAAGAAGAGGTTTACAGTGAAGGCGGTATCAGGAGATTTATCATCTGATAGCACCACTTATTTGATTGCTGGTGCTGCTGTAGTTGCTCTGCTTGGTACTGCCTTTCCCATCATCTTTTCCCGCAAGGATACTTGCCCAGAATGCGATGGTGCTGGTTTTGTAAGGAAATCAGGTGGTGGCGCGCTGAGGGCAAATGCAGCTCGCAAGGATTTAGCTCAAATTGTATGTGCTAACTGCAATGGCCTCGGCAAGCTCAATCAAGTCGACAAATAAATCACCACCACCTACATAGTACATACATTATTAGTTCCATCTTTGGATTAACTTACAGTAGACCAAACTTTGGAGGTCATATTCCCATAATAATCTTAATTTATTCAATTAAGAATTGTATTTTTAGATACTTTCCGGCACAATTTGTAAGTGTTAAATTTCAATGGACATTATTGTAAGAATATGACTCCAAAGTTCAGATGTTTTTAGAGTTAAATCAATTTTGGGAATAATATATAAAGAATTGTCCACAAGTTCCAATTATATATCCATTTTAGTATTACCTTCTGATAAATTTGTCCTACTGTCATGCATATTGTTGTTTGAAGTTGAATGATCGTTTTATTTGCTTATAAATACACCACATTTTATGATAAACTTTGAATTCTAGTTCAATCATATTATAGAGATGACACTGTTCATGTATACTTCAGTCCCTGAACCATTAAAATACAGTTCAATATATACTTTGGAGAAATATATGAAAGTTTAGTTCAAAGTTTTGCCCTAGGGCGTGTTGTGACTGTAACATAAAACCTCCAAATACTTGGAGATGGCTATATTGTGGTGGAAAACAAAACGCGAAACATCAATAGGATACTTTTCATTGTAGAAGAGAGCGCAGTCAGTGTCTGAGGTGTGACAGTGTGTCAATGCAGTCCATCTTATGATCAAAACAAGCATTCTGCTCTTAGTTTCAATGCTCTTTCATGTGATCAGAAGCTTAAGTGCTTCATTATCAAGCAGACAACAATCTGCATTAGGATAGGATCAGATTTCTAATAATAGAATTGCTTTTTGACTTTAATGAAAGATTGAAAGTTACCACGCAAATGCTCTTACTCCTACGTTTGAGTTATTACCCAAAGGTTATCACTGCTTTGAACGTACACCCAAAATGGAATTATAATAACCTAATAGTTAAAAAGGTTTTGCTGGAAGAACATAGGTTTTTGGGAAATTTTCCTTAATTCTATAAGTTAAAAGTAAAAAATAAAAATAAAAATAAAAATAAAAAAAGCTATACAAGCTACATTGTCAATTTGATGAGAAGTTGACATGTCAAAG

Coding sequence (CDS)

ATGGCATCCATGACTTCCTTCAAATCCCAATTTCTGATAAATCCATTGAAACCATCACAACCAACAGCAGCAGCAAGAAATTCATGGGTGGTCCAGTGTCCTCCTCAGAAGAAGAGGTTTACAGTGAAGGCGGTATCAGGAGATTTATCATCTGATAGCACCACTTATTTGATTGCTGGTGCTGCTGTAGTTGCTCTGCTTGGTACTGCCTTTCCCATCATCTTTTCCCGCAAGGATACTTGCCCAGAATGCGATGGTGCTGGTTTTGTAAGGAAATCAGGTGGTGGCGCGCTGAGGGCAAATGCAGCTCGCAAGGATTTAGCTCAAATTGTATGTGCTAACTGCAATGGCCTCGGCAAGCTCAATCAAGTCGACAAATAA

Protein sequence

MASMTSFKSQFLINPLKPSQPTAAARNSWVVQCPPQKKRFTVKAVSGDLSSDSTTYLIAGAAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGKLNQVDK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo09420.1	Spo09420.1	mRNA

Homology

[Close]

BLAST of Spo09420.1 vs. NCBI nr
Match: gi|902221376|gb|KNA18904.1| (hypothetical protein SOVF_066460 [Spinacia oleracea])

HSP 1 Score: 251.9 bits (642), Expect = 5.900e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


		  
Query: 1   MASMTSFKSQFLINPLKPSQPTAAARNSWVVQCPPQKKRFTVKAVSGDLSSDSTTYLIAG 60
           MASMTSFKSQFLINPLKPSQPTAAARNSWVVQCPPQKKRFTVKAVSGDLSSDSTTYLIAG
Sbjct: 1   MASMTSFKSQFLINPLKPSQPTAAARNSWVVQCPPQKKRFTVKAVSGDLSSDSTTYLIAG 60

Query: 61  AAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGK 120
           AAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGK
Sbjct: 61  AAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGK 120

Query: 121 LNQVDK 127
           LNQVDK
Sbjct: 121 LNQVDK 126

[Close]

BLAST of Spo09420.1 vs. NCBI nr
Match: gi|731334165|ref|XP_010678087.1| (PREDICTED: uncharacterized protein LOC104893654 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 167.2 bits (422), Expect = 1.900e-38
Identity = 93/131 (70.99%), Postives = 104/131 (79.39%), Query Frame = 1


		  
Query: 1   MASMTSFKSQFLINPLKPSQPTAAARNSW----VVQCPP-QKKRFTVKAVSGDLSSDSTT 60
           MAS+  FKSQFL NPL   Q  A  +N +    +V+ P    KRF+VKA +G+LSSDSTT
Sbjct: 1   MASVAPFKSQFLSNPLNQPQ-IAVVKNFYPSFSLVRAPGLHHKRFSVKAAAGELSSDSTT 60

Query: 61  YLIAGAAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANC 120
           YLIAGAA VAL+GTAFPI+FSRKDTCPECDGAGFVRK+ G  LRANAARKD  QIVCANC
Sbjct: 61  YLIAGAAAVALVGTAFPILFSRKDTCPECDGAGFVRKA-GKTLRANAARKDQNQIVCANC 120

Query: 121 NGLGKLNQVDK 127
           NGLGKLNQVDK
Sbjct: 121 NGLGKLNQVDK 129

[Close]

BLAST of Spo09420.1 vs. NCBI nr
Match: gi|255581504|ref|XP_002531558.1| (PREDICTED: uncharacterized protein LOC8258379 [Ricinus communis])

HSP 1 Score: 152.5 bits (384), Expect = 4.800e-34
Identity = 78/105 (74.29%), Postives = 84/105 (80.00%), Query Frame = 1


		  
Query: 23  AAARNSWVVQCPPQKKR-FTVKAVSGDLSSDSTTYLIAGAAVVALLGTAFPIIFSRKDTC 82
           A A  SW       KKR  TV A  G++S+D T YLIAGAA VAL+GTAFPI+FSRKD C
Sbjct: 30  ARAAASWNCTQKNNKKRSLTVVAAFGEVSADGTNYLIAGAAAVALIGTAFPILFSRKDLC 89

Query: 83  PECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGKLNQVDK 127
           PECDGAGF+RKSGGGALRANAARKD AQIVC NCNGLGKLNQVDK
Sbjct: 90  PECDGAGFIRKSGGGALRANAARKDQAQIVCPNCNGLGKLNQVDK 134

[Close]

BLAST of Spo09420.1 vs. NCBI nr
Match: gi|657991127|ref|XP_008387784.1| (PREDICTED: uncharacterized protein LOC103450243 [Malus domestica])

HSP 1 Score: 148.3 bits (373), Expect = 9.100e-33
Identity = 82/126 (65.08%), Postives = 88/126 (69.84%), Query Frame = 1


		  
Query: 1   MASMTSFKSQFLINPLKPSQPTAAARNSWVVQCPPQKKRFTVKAVSGDLSSDSTTYLIAG 60
           M SM+S  +     PLK S        S       +KK  TV A  GD+S+D T YLIAG
Sbjct: 1   MGSMSSPLTMISAQPLKQSAAAVGRSPSLFRMHSEKKKSLTVVAAIGDVSADGTPYLIAG 60

Query: 61  AAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGK 120
           AA VALLGTAFPI+FSRKD CPECDGAGFVRK GG  LRANAARKD AQIVCA CNGLGK
Sbjct: 61  AAAVALLGTAFPILFSRKDLCPECDGAGFVRK-GGAXLRANAARKDEAQIVCARCNGLGK 120

Query: 121 LNQVDK 127
           LNQVDK
Sbjct: 121 LNQVDK 125

[Close]

BLAST of Spo09420.1 vs. NCBI nr
Match: gi|590629369|ref|XP_007026970.1| (Uncharacterized protein TCM_021901 [Theobroma cacao])

HSP 1 Score: 146.4 bits (368), Expect = 3.500e-32
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 1


		  
Query: 36  QKKRFTVKAVSGDLSSDSTTYLIAGAAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGG 95
           QK+  TV A  GD+S+DST YLIAGAAVVAL+GTAFPI+FSRKDTCPECDGAGFVRKS G
Sbjct: 51  QKRSLTVVAAIGDVSADSTNYLIAGAAVVALVGTAFPILFSRKDTCPECDGAGFVRKS-G 110

Query: 96  GALRANAARKDLAQIVCANCNGLGKLNQVDK 127
             LRANAARKD AQIVCA CNGLGKLNQ+DK
Sbjct: 111 VPLRANAARKDEAQIVCARCNGLGKLNQIDK 140

[Close]

BLAST of Spo09420.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIZ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066460 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.100e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


		  
Query: 1   MASMTSFKSQFLINPLKPSQPTAAARNSWVVQCPPQKKRFTVKAVSGDLSSDSTTYLIAG 60
           MASMTSFKSQFLINPLKPSQPTAAARNSWVVQCPPQKKRFTVKAVSGDLSSDSTTYLIAG
Sbjct: 1   MASMTSFKSQFLINPLKPSQPTAAARNSWVVQCPPQKKRFTVKAVSGDLSSDSTTYLIAG 60

Query: 61  AAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGK 120
           AAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGK
Sbjct: 61  AAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGK 120

Query: 121 LNQVDK 127
           LNQVDK
Sbjct: 121 LNQVDK 126

[Close]

BLAST of Spo09420.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CGC7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g111610 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.300e-38
Identity = 93/131 (70.99%), Postives = 104/131 (79.39%), Query Frame = 1


		  
Query: 1   MASMTSFKSQFLINPLKPSQPTAAARNSW----VVQCPP-QKKRFTVKAVSGDLSSDSTT 60
           MAS+  FKSQFL NPL   Q  A  +N +    +V+ P    KRF+VKA +G+LSSDSTT
Sbjct: 1   MASVAPFKSQFLSNPLNQPQ-IAVVKNFYPSFSLVRAPGLHHKRFSVKAAAGELSSDSTT 60

Query: 61  YLIAGAAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRANAARKDLAQIVCANC 120
           YLIAGAA VAL+GTAFPI+FSRKDTCPECDGAGFVRK+ G  LRANAARKD  QIVCANC
Sbjct: 61  YLIAGAAAVALVGTAFPILFSRKDTCPECDGAGFVRKA-GKTLRANAARKDQNQIVCANC 120

Query: 121 NGLGKLNQVDK 127
           NGLGKLNQVDK
Sbjct: 121 NGLGKLNQVDK 129

[Close]

BLAST of Spo09420.1 vs. UniProtKB/TrEMBL
Match: B9SZY9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0451880 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.400e-34
Identity = 78/105 (74.29%), Postives = 84/105 (80.00%), Query Frame = 1


		  
Query: 23  AAARNSWVVQCPPQKKR-FTVKAVSGDLSSDSTTYLIAGAAVVALLGTAFPIIFSRKDTC 82
           A A  SW       KKR  TV A  G++S+D T YLIAGAA VAL+GTAFPI+FSRKD C
Sbjct: 30  ARAAASWNCTQKNNKKRSLTVVAAFGEVSADGTNYLIAGAAAVALIGTAFPILFSRKDLC 89

Query: 83  PECDGAGFVRKSGGGALRANAARKDLAQIVCANCNGLGKLNQVDK 127
           PECDGAGF+RKSGGGALRANAARKD AQIVC NCNGLGKLNQVDK
Sbjct: 90  PECDGAGFIRKSGGGALRANAARKDQAQIVCPNCNGLGKLNQVDK 134

[Close]

BLAST of Spo09420.1 vs. UniProtKB/TrEMBL
Match: A0A061ESU4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021901 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.400e-32
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 1


		  
Query: 36  QKKRFTVKAVSGDLSSDSTTYLIAGAAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGG 95
           QK+  TV A  GD+S+DST YLIAGAAVVAL+GTAFPI+FSRKDTCPECDGAGFVRKS G
Sbjct: 51  QKRSLTVVAAIGDVSADSTNYLIAGAAVVALVGTAFPILFSRKDTCPECDGAGFVRKS-G 110

Query: 96  GALRANAARKDLAQIVCANCNGLGKLNQVDK 127
             LRANAARKD AQIVCA CNGLGKLNQ+DK
Sbjct: 111 VPLRANAARKDEAQIVCARCNGLGKLNQIDK 140

[Close]

BLAST of Spo09420.1 vs. UniProtKB/TrEMBL
Match: A0A118JW34_CYNCS (Heat shock protein DnaJ, cysteine-rich domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_003168 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.100e-32
Identity = 73/86 (84.88%), Postives = 76/86 (88.37%), Query Frame = 1


		  
Query: 41  TVKAVSGDLSSDSTTYLIAGAAVVALLGTAFPIIFSRKDTCPECDGAGFVRKSGGGALRA 100
           TV A  GD+SSD TTYLIAGAA VA+LGTAFPI+FSRKDTCPECDGAGFVRKS G  LRA
Sbjct: 41  TVVAAVGDVSSDGTTYLIAGAAAVAILGTAFPILFSRKDTCPECDGAGFVRKS-GATLRA 100

Query: 101 NAARKDLAQIVCANCNGLGKLNQVDK 127
           NAARKD  QIVCANCNGLGKLNQVDK
Sbjct: 101 NAARKDQTQIVCANCNGLGKLNQVDK 125

[Close]

BLAST of Spo09420.1 vs. TAIR (Arabidopsis)
Match: AT5G02160.1 (unknown protein)

HSP 1 Score: 137.9 bits (346), Expect = 4.300e-33
Identity = 71/95 (74.74%), Postives = 77/95 (81.05%), Query Frame = 1


		  
Query: 35  PQKKRFT---VKAVSGDLSSDSTTYLIAGAAVVALLGTAFPIIFSRKDTCPECDGAGFVR 94
           P+ KR +   V A  GD+SSD T YLI GA  VAL+GTAFPI+F RKDTCPECDGAGFVR
Sbjct: 35  PKNKRSSSSVVVAAVGDVSSDGTIYLIGGAIAVALVGTAFPILFKRKDTCPECDGAGFVR 94

Query: 95  KSGGGALRANAARKDLAQIVCANCNGLGKLNQVDK 127
           K GG  LRANAARKDL QIVCANCNGLGKLNQ+DK
Sbjct: 95  K-GGVTLRANAARKDLPQIVCANCNGLGKLNQIDK 128

The following BLAST results are available for this feature:

BLAST of Spo09420.1 vs. NCBI nr
BLAST of Spo09420.1 vs. UniProtKB/TrEMBL
BLAST of Spo09420.1 vs. ExPASy Swiss-Prot
BLAST of Spo09420.1 vs. TAIR (Arabidopsis)

BLAST of Spo09420.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902221376\|gb\|KNA18904.1\|	5.9e-64	100.	hypothetical protein SOVF_0664...	[more]
gi\|731334165\|ref\|XP_010678087.1\|	1.9e-38	70.9	PREDICTED: uncharacterized pro...	[more]
gi\|255581504\|ref\|XP_002531558.1\|	4.8e-34	74.2	PREDICTED: uncharacterized pro...	[more]
gi\|657991127\|ref\|XP_008387784.1\|	9.1e-33	65.0	PREDICTED: uncharacterized pro...	[more]
gi\|590629369\|ref\|XP_007026970.1\|	3.5e-32	81.3	Uncharacterized protein TCM_02...	[more]

BLAST of Spo09420.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RIZ3_SPIOL	4.1e-64	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CGC7_BETVU	1.3e-38	70.9	Uncharacterized protein OS=Bet...	[more]
B9SZY9_RICCO	3.4e-34	74.2	Putative uncharacterized prote...	[more]
A0A061ESU4_THECC	2.4e-32	81.3	Uncharacterized protein OS=The...	[more]
A0A118JW34_CYNCS	4.1e-32	84.8	Heat shock protein DnaJ, cyste...	[more]

BLAST of Spo09420.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo09420.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G02160.1	4.3e-33	74.7	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001305	Heat shock protein DnaJ, cysteine-rich domain	GENE3D	2.10.230.10		coord: 78..122 score: 1.
IPR001305	Heat shock protein DnaJ, cysteine-rich domain	unknown	SSF57938	DnaJ/Hsp40 cysteine-rich domain	coord: 69..121 score: 6.4
None	No IPR available	PANTHER	PTHR36389	FAMILY NOT NAMED	coord: 39..126 score: 4.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0042732	D-xylose metabolic process
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0007033	vacuole organization
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016049	cell growth
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0043085	positive regulation of catalytic activity
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0009045	xylose isomerase activity
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11520	0.74	Barchart \| Table
Spo16190	0.72	Barchart \| Table
Spo04122	0.71	Barchart \| Table
Spo24796	0.70	Barchart \| Table
Spo00361	0.69	Barchart \| Table
Spo12849	0.69	Barchart \| Table
Spo11509	0.69	Barchart \| Table
Spo19788	0.69	Barchart \| Table
Spo17338	0.69	Barchart \| Table
Spo27352	0.68	Barchart \| Table
Spo03903	0.68	Barchart \| Table
Spo08645	0.68	Barchart \| Table
Spo22998	0.68	Barchart \| Table
Spo06679	0.67	Barchart \| Table
Spo26834	0.67	Barchart \| Table
Spo00124	0.67	Barchart \| Table
Spo19738	0.67	Barchart \| Table
Spo01261	0.67	Barchart \| Table
Spo06919	0.67	Barchart \| Table
Spo17275	0.66	Barchart \| Table
Spo02479	0.66	Barchart \| Table
Spo19850	0.66	Barchart \| Table
Spo23381	0.66	Barchart \| Table
Spo00748	0.66	Barchart \| Table
Spo10861	0.66	Barchart \| Table
Spo11219	0.66	Barchart \| Table
Spo08494	0.66	Barchart \| Table
Spo09499	0.65	Barchart \| Table
Spo12962	0.65	Barchart \| Table
Spo13583	0.65	Barchart \| Table
Spo06141	0.65	Barchart \| Table
Spo20890	0.65	Barchart \| Table
Spo22364	0.65	Barchart \| Table
Spo25320	0.65	Barchart \| Table
Spo10751	0.65	Barchart \| Table