Spo27136 (gene) | SpinachBase

Overview


Name	Spo27136
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr5 : 27788861 .. 27791145 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCCACTTCACTCAACTGCTGAAACCGCAACAATGCAACAGCAACTGCAAAACCAAAATCAAAATCAAAATCAAAATCCATGGAACTTAAGAATTCAGGCCAAGATTAATCGCCATTTTAGTCTCGATTTCAATCTCAATCTCCACACTCGCCTACCTCCTTTTTCTCTCCTCCTCGATCTCAAATTCCTAAAATCCCATATTTTCCTTTGCTCCGATTTCTCATCTTCAACTAAACCTAAAATCAGCCACAAATTTCTTCGATTTTTCAGTAAATTAATACCCAAGAAGTCCAAAATTTCACCAATTTCTTCCCAGAAACCAACAATTAAGTCGAAACTCATCCGATATCCTAGCAAATTACTGTCGAAGAAATCCAAGAAAATCCCGCCCGTTTCTTCCCTGAAAAGCGCCGTGAATTTGCAATCTTTTTGGGTCGCTTTGCTTGTTACAATGTTGGTATCTTTCATTCGTAACCCTATGCTTAAGTTTTTTAATTTTGATGAATTTGAGATTTCTGAGTTTGTTGATAATTTTTGGGATTATGCAGCAAATTCAATGAAATACTCTCCGTAGTTTTTATTTATAATTTAATTTTGTTCTTAGTGTTGTTGGTAAATTGTAGGCTGTGTGTTTTATAAAAGATGATTCAGTGAATTATTTTCGAGTGAGTTTAAGCTTAATTTCTTCTATTTCATTGATTGTATTATTTGTCTTCCCCCCTCTTTTTGGTGATAATGTGAACTGTTATTTGTAGTCAATGGAAAGGTTGGAATTGCATTAGTGATTTGAGGTTGGTGCATATTGCAAAATTTCTTATTTTCTTCTTGATTGCCTTTTTGGTAGGCTTAGTGTTTGATAGCTAAACTTGGGGTGTCTGAGTTCGAGTTTTAATACCATCTAGTCGATTCAAATTTGACTTATTACAGAGCCAACCTAGCTAGATTGCTCGGCAGTGAGCTACGCTGTTGCTGCTCTCCAGTCTAGGAGTTAACCGAGAATTCGTTGAGACGAATCTAGTAAGACCCCACACGACTATGTTTTTTCTCAAGTATAAATCACAAAATGAAGTCAAAGGAGTTTGTGTGAATAGTTGTGTCATGTAAATAAGAACGGAGGAAGTATGACACAAAAGCTGTCTCTTGCACTGTTGCTTCATTGCCAATTATTCTGCCACCTCTTGCTTCTTTGCCAATTATTCTATCACCTAGGAAGGTTTGTGATATCAGGATGATTATCTATCTCCCATCATTTTGGCCAACCACGCAGCTTTCCACCCTCCCGAAAGCCAAAACTCCTCTCAATAGCAGTATCAAAATGAACCTCGAGTATGTTGGATAAATACTCTATCTTGCTGTTTGTCTTTTCTGAGTATTCTGATCATGTCAACGGCTTTCTTTGGTCAAGCAATTGTTGATAATCTCACTCCATGGGTGCAATTACGGGGCAGGGCAAAAGAAAATATCCATACTTGTAATGTTAGTGTATGATTTTATTCAATTTCTTTTTGGCTTTGTGATGATGCAATCAAGTTTTGTAGTACCTTAATCCCTAACCCTCACTTGTACTGAATATCAAGGCATTACATATTGAGTTATGCTGTCAATGTTCCCCTCCCCAACTGCTGACAGTTTAAATACATGGTTGCAATTATGTGGCAGGGCAAAGGAATAATCCAGACATTAAAGCTTAATGTCTTTTGATTCAATTATGTTGCAAACTTGCAATCTGTTAGAACAGGCTTATTTGTGTTTTATAGTAGTCTAAAACTCAACACAAATGTGTTGAATGTTTTATTCATGTTGATTGGGATGAAACCTGTTCCAGCGAATTGCACCATCCTCTGTCTGAGTAACGACCTTTTGGTTACCAGATGGCTGGGATGTTCTCCCTGTGAGTTTGAATATAAAAGCACTTACGCGTTGAATTCTGCTATCAATGTTGGCGTCTTTCACAACATATGTGACTACTACTACTACTACTACTACTACTACTACTACTACTACTAATACGAGTACTGCACCATTAGATAAGCACTGTCAAGCAACAAAATACGAGTACTTCATCATTTTGGAATCGAGGAGAAAACTTTGAAGAATGACTTAATTGACAATGGCAGCACCTGTTGATTGAAAGTATCAAGCGTTGGACTCTTGGTAAAAAAGAAGAATGAAACTAAACCATAATATTTCTTGCTCTTGTTTTCTTTGAAGGAAAGTCGTGAGAATCAGAAGCCTAGATTTGTTTCGTTGAACTTTGAACTTCCAATATGGTACCCAGTTTGA

mRNA sequence

GCTCCACTTCACTCAACTGCTGAAACCGCAACAATGCAACAGCAACTGCAAAACCAAAATCAAAATCAAAATCAAAATCCATGGAACTTAAGAATTCAGGCCAAGATTAATCGCCATTTTAGTCTCGATTTCAATCTCAATCTCCACACTCGCCTACCTCCTTTTTCTCTCCTCCTCGATCTCAAATTCCTAAAATCCCATATTTTCCTTTGCTCCGATTTCTCATCTTCAACTAAACCTAAAATCAGCCACAAATTTCTTCGATTTTTCAGTAAATTAATACCCAAGAAGTCCAAAATTTCACCAATTTCTTCCCAGAAACCAACAATTAAGTCGAAACTCATCCGATATCCTAGCAAATTACTGTCGAAGAAATCCAAGAAAATCCCGCCCGTTTCTTCCCTGAAAAGCGCCGTGAATTTGCAATCTTTTTGGGTCGCTTTGCTTGTTACAATGTTGGAAAGTCGTGAGAATCAGAAGCCTAGATTTGTTTCGTTGAACTTTGAACTTCCAATATGGTACCCAGTTTGA

Coding sequence (CDS)

ATGCAACAGCAACTGCAAAACCAAAATCAAAATCAAAATCAAAATCCATGGAACTTAAGAATTCAGGCCAAGATTAATCGCCATTTTAGTCTCGATTTCAATCTCAATCTCCACACTCGCCTACCTCCTTTTTCTCTCCTCCTCGATCTCAAATTCCTAAAATCCCATATTTTCCTTTGCTCCGATTTCTCATCTTCAACTAAACCTAAAATCAGCCACAAATTTCTTCGATTTTTCAGTAAATTAATACCCAAGAAGTCCAAAATTTCACCAATTTCTTCCCAGAAACCAACAATTAAGTCGAAACTCATCCGATATCCTAGCAAATTACTGTCGAAGAAATCCAAGAAAATCCCGCCCGTTTCTTCCCTGAAAAGCGCCGTGAATTTGCAATCTTTTTGGGTCGCTTTGCTTGTTACAATGTTGGAAAGTCGTGAGAATCAGAAGCCTAGATTTGTTTCGTTGAACTTTGAACTTCCAATATGGTACCCAGTTTGA

Protein sequence

MQQQLQNQNQNQNQNPWNLRIQAKINRHFSLDFNLNLHTRLPPFSLLLDLKFLKSHIFLCSDFSSSTKPKISHKFLRFFSKLIPKKSKISPISSQKPTIKSKLIRYPSKLLSKKSKKIPPVSSLKSAVNLQSFWVALLVTMLESRENQKPRFVSLNFELPIWYPV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo27136.1	Spo27136.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo27136.1 vs. NCBI nr
BLAST of Spo27136.1 vs. UniProtKB/TrEMBL
BLAST of Spo27136.1 vs. ExPASy Swiss-Prot
BLAST of Spo27136.1 vs. TAIR (Arabidopsis)

BLAST of Spo27136.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo27136.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo27136.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo27136.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0051083	'de novo' cotranslational protein folding
biological_process	GO:0006783	heme biosynthetic process
biological_process	GO:0006449	regulation of translational termination
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0000103	sulfate assimilation
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0070814	hydrogen sulfide biosynthetic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0006569	tryptophan catabolic process
biological_process	GO:0006810	transport
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0009684	indoleacetic acid biosynthetic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0042793	plastid transcription
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0048481	plant ovule development
biological_process	GO:0006457	protein folding
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0006950	response to stress
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:0019760	glucosinolate metabolic process
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005768	endosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005634	nucleus
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0018444	translation release factor complex
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0004602	glutathione peroxidase activity
molecular_function	GO:0004746	riboflavin synthase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0000774	adenyl-nucleotide exchange factor activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003756	protein disulfide isomerase activity
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0004781	sulfate adenylyltransferase (ATP) activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003747	translation release factor activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0003993	acid phosphatase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo06637	0.75	Barchart \| Table
Spo25985	0.75	Barchart \| Table
Spo09625	0.74	Barchart \| Table
Spo17740	0.73	Barchart \| Table
Spo01252	0.72	Barchart \| Table
Spo02649	0.72	Barchart \| Table
Spo23415	0.71	Barchart \| Table
Spo08407	0.70	Barchart \| Table
Spo14016	0.70	Barchart \| Table
Spo04123	0.69	Barchart \| Table
Spo02919	0.69	Barchart \| Table
Spo00256	0.69	Barchart \| Table
Spo13788	0.69	Barchart \| Table
Spo23332	0.68	Barchart \| Table
Spo08097	0.68	Barchart \| Table
Spo02918	0.68	Barchart \| Table
Spo23558	0.68	Barchart \| Table
Spo25196	0.68	Barchart \| Table
Spo11688	0.67	Barchart \| Table
Spo07235	0.67	Barchart \| Table
Spo08552	0.67	Barchart \| Table
Spo12867	0.66	Barchart \| Table
Spo08478	0.66	Barchart \| Table
Spo13981	0.66	Barchart \| Table
Spo14914	0.66	Barchart \| Table
Spo23154	0.66	Barchart \| Table
Spo21631	0.65	Barchart \| Table
Spo18844	0.65	Barchart \| Table
Spo12682	0.65	Barchart \| Table
Spo26975	0.65	Barchart \| Table
Spo27250	0.65	Barchart \| Table