Spo05412 (gene) | SpinachBase

Overview


Name	Spo05412
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Photosystem I P700 chlorophyll a apoprotein A1 (1.97.1.12) (PSI-A) (PsaA)
Location	chr5 : 65613940 .. 65614709 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGGCCAGTTCAGTCCTTTGAGATTGAGATTCAACTTGCTTACAAGGCCTGCAGGAATTTGTTGGGTATTTGGAATAATTGGAATAAATAGAAGTATAAGTAGTCAAAAATTTGTATCTTTATTTACATTTTTTGTTTGGAAAAGAATCTGTTTTTATGTTATTTCGTACTGTACAAATTCTTTGTTTGTGTAATCGTTTTCCCACAAGGGGTAATGAAAAGAATTTTAGAATGGATTGATACCTATGTCTAGAAATGGGAATTTTTTTCGTACCCTTCGCTTTAGGGCGTCCTCAAGATATGTTTTCAGATACCGCTATACAATTACAACCTGTCTTCGCTCAATGGATACAAAACACCCATGCTTTAGCGCCTAGTGCAACGACTCCGGGTGCAACAGCAAGCACCAGTTTGACTTGGGGAGGTAGTGATTTAGTAGCAGTGGGTGGAAAAGTAGCCTTGTTACCCATTCCACTAGGGACCGCTGATTTTTTAGTCCACCACATTCATGCTTTTACAATTTATGTGACGATACTAATACTTCTAAAAGGTGTTCTATTTGCTCGTAGCTCTCGTTTGATACCGGATAAAGCAAATCTTGGGTTTCGCTTCCCTTGCGATGGACCTGGAAGAGGGGGAACATGCCAAGTATCCGCGTGGGATCATGTATGCTTAGGGCTATTCTGGATGTACAACGCAATTTCGGATGGAATTCTAGGATTCCGCCTTGGAGAAAATACTTTTATGCATACCTCTTCCGGTTGA

mRNA sequence

ATGGTTAGGCCAGTTCAGTCCTTTGAGATTGAGATTCAACTTGCTTACAAGGCCTGCAGGAATTTGTTGGGGCGTCCTCAAGATATGTTTTCAGATACCGCTATACAATTACAACCTGTCTTCGCTCAATGGATACAAAACACCCATGCTTTAGCGCCTAGTGCAACGACTCCGGGTGCAACAGCAAGCACCAGTTTGACTTGGGGAGGTAGTGATTTAGTAGCAGTGGGTGGAAAAGTAGCCTTGTTACCCATTCCACTAGGGACCGCTGATTTTTTAGTCCACCACATTCATGCTTTTACAATTTATGTGACGATACTAATACTTCTAAAAGGTGTTCTATTTGCTCGTAGCTCTCGTTTGATACCGGATAAAGCAAATCTTGGGTTTCGCTTCCCTTGCGATGGACCTGGAAGAGGGGGAACATGCCAAGTATCCGCGTGGGATCATGTATGCTTAGGGCTATTCTGGATGTACAACGCAATTTCGGATGGAATTCTAGGATTCCGCCTTGGAGAAAATACTTTTATGCATACCTCTTCCGGTTGA

Coding sequence (CDS)

ATGGTTAGGCCAGTTCAGTCCTTTGAGATTGAGATTCAACTTGCTTACAAGGCCTGCAGGAATTTGTTGGGGCGTCCTCAAGATATGTTTTCAGATACCGCTATACAATTACAACCTGTCTTCGCTCAATGGATACAAAACACCCATGCTTTAGCGCCTAGTGCAACGACTCCGGGTGCAACAGCAAGCACCAGTTTGACTTGGGGAGGTAGTGATTTAGTAGCAGTGGGTGGAAAAGTAGCCTTGTTACCCATTCCACTAGGGACCGCTGATTTTTTAGTCCACCACATTCATGCTTTTACAATTTATGTGACGATACTAATACTTCTAAAAGGTGTTCTATTTGCTCGTAGCTCTCGTTTGATACCGGATAAAGCAAATCTTGGGTTTCGCTTCCCTTGCGATGGACCTGGAAGAGGGGGAACATGCCAAGTATCCGCGTGGGATCATGTATGCTTAGGGCTATTCTGGATGTACAACGCAATTTCGGATGGAATTCTAGGATTCCGCCTTGGAGAAAATACTTTTATGCATACCTCTTCCGGTTGA

Protein sequence

MVRPVQSFEIEIQLAYKACRNLLGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVALLPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVCLGLFWMYNAISDGILGFRLGENTFMHTSSG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05412.1	Spo05412.1	mRNA

Homology

[Close]

BLAST of Spo05412.1 vs. NCBI nr
Match: gi|11497525|ref|NP_054933.1| (photosystem I P700 chlorophyll a apoprotein A1 [Spinacia oleracea])

HSP 1 Score: 282.7 bits (722), Expect = 4.500e-73
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSAT PGATASTSLTWGGSDLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATAPGATASTSLTWGGSDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYN+IS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNSISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. NCBI nr
Match: gi|630716135|ref|YP_009027970.1| (photosystem I P700 chlorophyll a (chloroplast) (chloroplast) [Chrysobalanus icaco])

HSP 1 Score: 282.3 bits (721), Expect = 5.800e-73
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAP AT PGATASTSLTWGGSDLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPDATAPGATASTSLTWGGSDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. NCBI nr
Match: gi|456330990|ref|YP_007476351.1| (PsaA (chloroplast) [Trithuria inconspicua])

HSP 1 Score: 282.3 bits (721), Expect = 5.800e-73
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQP+FAQWIQNTHALAPSAT PGATASTSLTWGGSDLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPIFAQWIQNTHALAPSATAPGATASTSLTWGGSDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKG+LFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGLLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISIVIFHF 608

[Close]

BLAST of Spo05412.1 vs. NCBI nr
Match: gi|749404156|gb|AJF20616.1| (PsaA [Chrysanthemum indicum])

HSP 1 Score: 282.3 bits (721), Expect = 5.800e-73
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSAT PGATASTSLTWGG DLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATAPGATASTSLTWGGGDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. NCBI nr
Match: gi|748994210|gb|AJE74609.1| (photosystem I P700 chlorophyll a (plastid) [Lygodesmia juncea])

HSP 1 Score: 282.3 bits (721), Expect = 5.800e-73
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSAT PGATASTSLTWGG DLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATAPGATASTSLTWGGGDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. UniProtKB/TrEMBL
Match: A0A023T0U9_9ROSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Hirtella physophora GN=psaA PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.100e-73
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAP AT PGATASTSLTWGGSDLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPDATAPGATASTSLTWGGSDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. UniProtKB/TrEMBL
Match: A0A023T1I4_9ROSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Licania alba GN=psaA PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.100e-73
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAP AT PGATASTSLTWGGSDLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPDATAPGATASTSLTWGGSDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. UniProtKB/TrEMBL
Match: A0A0A0PJZ8_9ASTR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Artemisia montana GN=psaA PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.100e-73
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSAT PGATASTSLTWGG DLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATAPGATASTSLTWGGGDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. UniProtKB/TrEMBL
Match: M1FKX4_9ASTR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Artemisia frigida GN=psaA PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.100e-73
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSAT PGATASTSLTWGG DLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATAPGATASTSLTWGGGDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. UniProtKB/TrEMBL
Match: A0A023T0K8_9ROSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Licania heteromorpha GN=psaA PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.100e-73
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAP AT PGATASTSLTWGGSDLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPDATAPGATASTSLTWGGSDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. ExPASy Swiss-Prot
Match: PSAA_SPIOL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea GN=psaA PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.800e-75
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSAT PGATASTSLTWGGSDLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATAPGATASTSLTWGGSDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYN+IS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNSISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. ExPASy Swiss-Prot
Match: PSAA_CALFG (Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glaucus GN=psaA PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.200e-75
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQP+FAQW+QNTHALAPSAT PGATASTSLTWGG DLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPIFAQWVQNTHALAPSATAPGATASTSLTWGGGDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. ExPASy Swiss-Prot
Match: PSAA_EUCGG (Photosystem I P700 chlorophyll a apoprotein A1 OS=Eucalyptus globulus subsp. globulus GN=psaA PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.100e-75
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAP+AT PGATASTSLTWGG DLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPAATAPGATASTSLTWGGGDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. ExPASy Swiss-Prot
Match: PSAA_DAUCA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Daucus carota GN=psaA PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.100e-74
Identity = 137/147 (93.20%), Postives = 139/147 (94.56%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSAT PGAT STSLTWGG DLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATAPGATTSTSLTWGGGDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. ExPASy Swiss-Prot
Match: PSAA_NICSY (Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana sylvestris GN=psaA PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.100e-74
Identity = 137/147 (93.20%), Postives = 139/147 (94.56%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAP AT PGATASTSLTWGG DLVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 275.8 bits (704), Expect = 1.900e-74
Identity = 134/147 (91.16%), Postives = 137/147 (93.20%), Query Frame = 1

		  
Query: 23  LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATTPGATASTSLTWGGSDLVAVGGKVAL 82
           LGRPQDMFSDTAIQLQPVFAQWIQNTHALAP  T PG TASTSLTWGG +LVAVGGKVAL
Sbjct: 462 LGRPQDMFSDTAIQLQPVFAQWIQNTHALAPGVTAPGETASTSLTWGGGELVAVGGKVAL 521

Query: 83  LPIPLGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 142
           LPIPLGTADFLVHHIHAFTI+VT+LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT
Sbjct: 522 LPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGT 581

Query: 143 CQVSAWDHVCLGLFWMYNAISDGILGF 170
           CQVSAWDHV LGLFWMYNAIS  I  F
Sbjct: 582 CQVSAWDHVFLGLFWMYNAISVVIFHF 608

[Close]

BLAST of Spo05412.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.800e-27
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 1

		  
Query: 35  IQLQPVFAQWIQNTHA--------LAPSATTPGATASTSLTWGGSDLVAVGGKVALLPIP 94
           I ++P+FAQWIQ+ H         L  S + P   A  S+ W    L A+      L + 
Sbjct: 453 ILIEPIFAQWIQSAHGKTSYGFDVLLSSTSGPAFNAGRSI-WLPGWLNAINENSNSLFLT 512

Query: 95  LGTADFLVHHIHAFTIYVTILILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVS 154
           +G  DFLVHH  A  ++ T LIL+KG L AR S+L+PDK + G+ FPCDGPGRGGTC +S
Sbjct: 513 IGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDIS 572

Query: 155 AWDHVCLGLFWMYNAI 163
           AWD   L +FWM N I
Sbjct: 573 AWDAFYLAVFWMLNTI 587

The following BLAST results are available for this feature:

BLAST of Spo05412.1 vs. NCBI nr
BLAST of Spo05412.1 vs. UniProtKB/TrEMBL
BLAST of Spo05412.1 vs. ExPASy Swiss-Prot
BLAST of Spo05412.1 vs. TAIR (Arabidopsis)

BLAST of Spo05412.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|11497525\|ref\|NP_054933.1\|	4.5e-73	93.8	photosystem I P700 chlorophyll...	[more]
gi\|630716135\|ref\|YP_009027970.1\|	5.8e-73	93.8	photosystem I P700 chlorophyll...	[more]
gi\|456330990\|ref\|YP_007476351.1\|	5.8e-73	93.2	PsaA (chloroplast) [Trithuria ...	[more]
gi\|749404156\|gb\|AJF20616.1\|	5.8e-73	93.8	PsaA [Chrysanthemum indicum]	[more]
gi\|748994210\|gb\|AJE74609.1\|	5.8e-73	93.8	photosystem I P700 chlorophyll...	[more]

BLAST of Spo05412.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A023T0U9_9ROSI	4.1e-73	93.8	Photosystem I P700 chlorophyll...	[more]
A0A023T1I4_9ROSI	4.1e-73	93.8	Photosystem I P700 chlorophyll...	[more]
A0A0A0PJZ8_9ASTR	4.1e-73	93.8	Photosystem I P700 chlorophyll...	[more]
M1FKX4_9ASTR	4.1e-73	93.8	Photosystem I P700 chlorophyll...	[more]
A0A023T0K8_9ROSI	4.1e-73	93.8	Photosystem I P700 chlorophyll...	[more]

BLAST of Spo05412.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
PSAA_SPIOL	2.8e-75	93.8	Photosystem I P700 chlorophyll...	[more]
PSAA_CALFG	6.2e-75	92.5	Photosystem I P700 chlorophyll...	[more]
PSAA_EUCGG	8.1e-75	93.2	Photosystem I P700 chlorophyll...	[more]
PSAA_DAUCA	1.1e-74	93.2	Photosystem I P700 chlorophyll...	[more]
PSAA_NICSY	1.1e-74	93.2	Photosystem I P700 chlorophyll...	[more]

BLAST of Spo05412.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
ATCG00350.1	1.9e-74	91.1	Photosystem I, PsaA/PsaB prote...	[more]
ATCG00340.1	1.8e-27	46.3	Photosystem I, PsaA/PsaB prote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PRINTS	PR00257	PHOTSYSPSAAB	coord: 123..143 score: 1.0E-25coord: 150..171 score: 1.0E-25coord: 92..110 score: 1.0
IPR001280	Photosystem I PsaA/PsaB	GENE3D	1.20.1130.10		coord: 23..163 score: 1.1
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 22..166 score: 2.2
IPR001280	Photosystem I PsaA/PsaB	unknown	SSF81558	Photosystem I subunits PsaA/PsaB	coord: 23..169 score: 8.5
IPR020586	Photosystem I PsaA/PsaB, conserved site	PROSITE	PS00419	PHOTOSYSTEM_I_PSAAB	coord: 134..143 scor
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 23..161 score: 6.1
None	No IPR available	PANTHER	PTHR30128:SF8	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 23..161 score: 6.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo25004	0.80	Barchart \| Table
Spo09413	0.79	Barchart \| Table
Spo26127	0.79	Barchart \| Table
Spo08440	0.79	Barchart \| Table
Spo04277	0.78	Barchart \| Table
Spo02851	0.78	Barchart \| Table
Spo24707	0.78	Barchart \| Table
Spo25555	0.77	Barchart \| Table
Spo25537	0.77	Barchart \| Table
Spo06201	0.77	Barchart \| Table
Spo26126	0.75	Barchart \| Table
Spo05875	0.74	Barchart \| Table
Spo25538	0.74	Barchart \| Table
Spo24708	0.70	Barchart \| Table
Spo16490	0.69	Barchart \| Table
Spo06200	0.69	Barchart \| Table
Spo10627	0.69	Barchart \| Table
Spo11904	0.69	Barchart \| Table
Spo13959	0.69	Barchart \| Table
Spo16485	0.69	Barchart \| Table
Spo19560	0.69	Barchart \| Table
Spo22445	0.69	Barchart \| Table
Spo24717	0.69	Barchart \| Table
Spo24718	0.69	Barchart \| Table
Spo17923	0.68	Barchart \| Table
Spo17010	0.68	Barchart \| Table
Spo00626	0.68	Barchart \| Table
Spo16484	0.67	Barchart \| Table
Spo13650	0.67	Barchart \| Table
Spo04278	0.67	Barchart \| Table