Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATCTACCAATGTTGATGTCTCATGCCTTGGCCACAGGATTACTAGCAGCTGGAGCTACCATTGTTATCTTGCCCAAATTTGAAATGAATGATTTGCTCCTAGCAATATCAAAGTACAAGGTCAGTTACTTTCCGCTGGTTCCACCAATTCTTGTAGCAATGGTGAACCACGCGGATCAAATCAAGAAGAACTATGATTTGAGTTCGTTGAGACATGTTTTGTCAGGAGGAGCCCCATTAGGAAAGGAAGTGATAGAGGGTTTTGTAGAGAAGTTCCCAAATGTTGTAATCATGCAGGGGTATGGGCTTACAGAGTCCACAGCCATTGGGGCATCCACAGACTGCTTGGAGGAGAGTCGTAGGTATGGAACAGCTGGGTTGATTTCACCAAGCATAGAGGCAAAGATTGTTGACCCAGAGACTGGAAATGTTTTGGGGGTTAATCAGACTGGTGAGCTTTGGCTACGTGGCCACACTGTGATGAAAGGTAGTTTGCCACTATTTCCTCCTCTTACACTTGAATTCTGAAGTGTTCAGTGCCATTGTTTTGCTAAACCTTTTCCTTCTGCAACTTTCTACTTTACAAATTGCTTTTTAGTTAAAATGATTCAGTAGGCAAGTAGTAGCGCCTAGTGAATTATAACATGTTACTTGATGAGAGTTTTATGGATGTCATATATTGAAGGTTTGATCACAAATTTAAATCACCAAAACGTTTCTTAGAATAACGGTTCCTTTTAATGGTTCATGTTAGCCGACCCCAATCATTTTCGGACTAAGGCTTGGTTGTTGTTATTGTTGCTGTTTCAAGTATAGTTTAGACCTGAATAACTGACCCAAAAATGAATAATCACAGATATGGTGAGGTATTGTCCAAAGGATATATATTTGGTCCCCACTATGACTCCTGGATCTGCTTAATACGAAATTGTTTTAATTTGACTGTTTCTACTTTAGAACTTTAGATCCGTGAACATATGGAGCTAACACTTACACATGCTGCTGATGTATATAGCTGGTAGTTTCGATATCTTTTGTTGACCAAAGTTATTTTGTTTTAGTTAGAACTTAAATATGTATCTACAAAAGTCAAAGCTGTACCAGTTTGGTGAAGTTACTCTATGGCGAGACCAGAGTATGATATGATTTACTCTTAAGAACAATTTTCTTCTTCTTTAAGACAGAAGGATTTTCCTGTGATGATATAATGCTTGGCCTAATTTCTTATGTCATTGTTGCAGGCTACTTTAATAACCAGGAGGCGACTGTTTCAACTCTCACTTCAGACGGTTGGCTAAAAACAGGAGATGTGTGCTATATAGATGAAGATGGCTTCCTCTTTGTGGTTGATAGACTCAAGGAGTTGATCAAGTACAAGGGATATCAGGTACGGAGTAACTCTTAACCCAAAAAGTTCACTGTGTGTGTGTGTGCGCGCGTGTGCGTGTGCGTGTGTGTGTGTATTTTCTTTGCAACAAATCCCTCCCCTGCCTCGCCGGTCCCCCGTCCATCTTTGAGATGAATGGGCGTGTGGGTTTGGGATTGGTTTGGCTCTGAAGGCTGGGATGTAGTAACTCTTCTGATGGTGCTTCCTTTGATGATCTCTTTGATGATCAATTAATATTTCTTTACTGGAGCTTTTACATAGTGATGCATCAAATTAAGATGCCTTTTACAACTTTCTTCCAGCTATATCTTTTGAGTGCATTCATTTGACCAATGAGGCTTCTGCTTTATTAGATGTTTAGTTAACTAGTATATGCTTTTTTCCTCACAAGTTTGGCTACTTTCATCTCTGAATTTACTGCAATTAGTTTCTTTTTCACAAGCAATCAACAAGTTCAACAAATTATGTATGAGTATAACCAAGTTGGACAAGGGGTATGCATTTCATTTTAGTGTCATATTTTGGGTGCTTGAACCTCCAATATGGGTAGGACGCTTGAACATATCTAATTAGGTAATCAACATGCAGAGATTTCTGAAAACAGCAGAAATGTACATTACAGTAGCATAAGTACCCATGTTGGAAGTTGTGGTGGATTAGCGAGTTTGGGTTATACTTATATAGGTACCTCCTACATTTCATTATGAGGTCAACAGTAGTAGACATCAAAAAGGTAAACAAGTATTGCAATGGATTAATGGATCTGAATCTACATTTGCGTCTTATCAATTAAATACTCAATCTCTTTTAGAGGAAAAGAATGTGAAACATACTCTATTGTACTGTGTATAGAGTGCTTCTGTATAAAAATTTAGAGATGAAAATATTATCTTTAGTAACAAGGATACCGCACAACAGCTGAAAAAGATCTCATAGATTTACGTCTTTGATTTGCAGGTTCCACCTGCTGAATTAGAAGCATTGCTGCTTACTCATCCAGAAATTGCAGATGCTGCTGTTATTCCGTAAGTTGCACTCTAAAAATACAGTCCATCCTTCTGATTTCATTTGTAATTTTATGTTTTATCATTCTGAAATACCTAATATAGTAATTATCACATTGTACACAACAGGGTCCCAGATAAGAATGTTGGTCAGTTTCCAATGGCATATGTGGTGAGGAAAGCCGGTAGTTCCTTATCAGAGAACGAGATCATGGATTTTGTAACAAAACAGGTGAGCTCAAAGGAAAAGAACACAAACACTAGTTAGGTCCCATCTTGAACTTATACGAACTTATGAACTTATGAACTTATCTTAAGCTATAGCCTTTATCTTAAGCTATAGCTGATTAGAACTTACAATTTCCGTCTATGAACTTCTTGAAACTTATCTGAACTTTGCTTTAGGTATGTATTGAACTTGAGTAGCCTTTAATCTGAACAAATTGTCCCTTAATCTGCTGAAGCAATGAGATGGGAAACATAGAGTAGAGCACAAGACGGGGATGTAAAATGGGACATGCAATCTCAATCTGTGTTTTCCATTTTGTTCATTCAAACTCGATGTTGCAAGGTACTCAGGTTTTTATGGTTTATGGTTTATGGTTTATGCAGGTCGCTCCTTACAAAAGAATCCGAAGGGTGGCGTTTATAGATTCTGTACCTAAGAATGCATCTGGGAAGATTCTGCGGAAAGACCTCATCAAATTGGCTACTTCTGGTTCGAAACTATGAGCCAGTTGCATTTTCAGAAAAATAAAATAAAAAAATTTGAATCTATTTGAACCAACTGGTGACCGGATTCTCCCAGGGTTCTTAAAATATTACTATGTAAAATAGATGAAAAATGTACCATGTGGAATATGTCATTGTAGCCGTGGACGAACTTCGTACTAAAATAAGCTAATGTTTGAGCAAGAAGATTAATGGTACTGCAACATGTATCTGCTGCCAGCCTTGGTACCAAATGCAGTTCACAAGGCATCTCTTTGACCATTACATAACTTTGAGCCATCCCATGTTGAATAAATTCAACGGAAAGTTCAGTGTTTTAATGTCTATTAAGTGCTGGTTTGTTTCGTTGCATTTTCTTGAGGAAAAATATTAGTGCGTTAATTAATGAAGAGACAATTTGTTCATGAGTACAGTATATAAGGAAAACTAGTTAGCACATGTGTAATGCACGGTTTCATTCATTATTTATCTATTTTTTTGTGAAAATTTATTCAAAT ATGTATCTACCAATGTTGATGTCTCATGCCTTGGCCACAGGATTACTAGCAGCTGGAGCTACCATTGTTATCTTGCCCAAATTTGAAATGAATGATTTGCTCCTAGCAATATCAAAGTACAAGGTCAGTTACTTTCCGCTGGTTCCACCAATTCTTGTAGCAATGGTGAACCACGCGGATCAAATCAAGAAGAACTATGATTTGAGTTCGTTGAGACATGTTTTGTCAGGAGGAGCCCCATTAGGAAAGGAAGTGATAGAGGGTTTTGTAGAGAAGTTCCCAAATGTTGTAATCATGCAGGGGTATGGGCTTACAGAGTCCACAGCCATTGGGGCATCCACAGACTGCTTGGAGGAGAGTCGTAGGTATGGAACAGCTGGGTTGATTTCACCAAGCATAGAGGCAAAGATTGTTGACCCAGAGACTGGAAATGTTTTGGGGGTTAATCAGACTGGTGAGCTTTGGCTACGTGGCCACACTGTGATGAAAGGCTACTTTAATAACCAGGAGGCGACTGTTTCAACTCTCACTTCAGACGGTTGGCTAAAAACAGGAGATGTGTGCTATATAGATGAAGATGGCTTCCTCTTTGTGGTTGATAGACTCAAGGAGTTGATCAAGTACAAGGGATATCAGGTTCCACCTGCTGAATTAGAAGCATTGCTGCTTACTCATCCAGAAATTGCAGATGCTGCTGTTATTCCGGTCCCAGATAAGAATGTTGGTCAGTTTCCAATGGCATATGTGGTGAGGAAAGCCGGTAGTTCCTTATCAGAGAACGAGATCATGGATTTTGTAACAAAACAGGTCGCTCCTTACAAAAGAATCCGAAGGGTGGCGTTTATAGATTCTGTACCTAAGAATGCATCTGGGAAGATTCTGCGGAAAGACCTCATCAAATTGGCTACTTCTGGTTCGAAACTATGAGCCAGTTGCATTTTCAGAAAAATAAAATAAAAAAATTTGAATCTATTTGAACCAACTGGTGACCGGATTCTCCCAGGGTTCTTAAAATATTACTATGTAAAATAGATGAAAAATGTACCATGTGGAATATGTCATTGTAGCCGTGGACGAACTTCGTACTAAAATAAGCTAATGTTTGAGCAAGAAGATTAATGGTACTGCAACATGTATCTGCTGCCAGCCTTGGTACCAAATGCAGTTCACAAGGCATCTCTTTGACCATTACATAACTTTGAGCCATCCCATGTTGAATAAATTCAACGGAAAGTTCAGTGTTTTAATGTCTATTAAGTGCTGGTTTGTTTCGTTGCATTTTCTTGAGGAAAAATATTAGTGCGTTAATTAATGAAGAGACAATTTGTTCATGAGTACAGTATATAAGGAAAACTAGTTAGCACATGTGTAATGCACGGTTTCATTCATTATTTATCTATTTTTTTGTGAAAATTTATTCAAAT ATGTATCTACCAATGTTGATGTCTCATGCCTTGGCCACAGGATTACTAGCAGCTGGAGCTACCATTGTTATCTTGCCCAAATTTGAAATGAATGATTTGCTCCTAGCAATATCAAAGTACAAGGTCAGTTACTTTCCGCTGGTTCCACCAATTCTTGTAGCAATGGTGAACCACGCGGATCAAATCAAGAAGAACTATGATTTGAGTTCGTTGAGACATGTTTTGTCAGGAGGAGCCCCATTAGGAAAGGAAGTGATAGAGGGTTTTGTAGAGAAGTTCCCAAATGTTGTAATCATGCAGGGGTATGGGCTTACAGAGTCCACAGCCATTGGGGCATCCACAGACTGCTTGGAGGAGAGTCGTAGGTATGGAACAGCTGGGTTGATTTCACCAAGCATAGAGGCAAAGATTGTTGACCCAGAGACTGGAAATGTTTTGGGGGTTAATCAGACTGGTGAGCTTTGGCTACGTGGCCACACTGTGATGAAAGGCTACTTTAATAACCAGGAGGCGACTGTTTCAACTCTCACTTCAGACGGTTGGCTAAAAACAGGAGATGTGTGCTATATAGATGAAGATGGCTTCCTCTTTGTGGTTGATAGACTCAAGGAGTTGATCAAGTACAAGGGATATCAGGTTCCACCTGCTGAATTAGAAGCATTGCTGCTTACTCATCCAGAAATTGCAGATGCTGCTGTTATTCCGGTCCCAGATAAGAATGTTGGTCAGTTTCCAATGGCATATGTGGTGAGGAAAGCCGGTAGTTCCTTATCAGAGAACGAGATCATGGATTTTGTAACAAAACAGGTCGCTCCTTACAAAAGAATCCGAAGGGTGGCGTTTATAGATTCTGTACCTAAGAATGCATCTGGGAAGATTCTGCGGAAAGACCTCATCAAATTGGCTACTTCTGGTTCGAAACTATGA MYLPMLMSHALATGLLAAGATIVILPKFEMNDLLLAISKYKVSYFPLVPPILVAMVNHADQIKKNYDLSSLRHVLSGGAPLGKEVIEGFVEKFPNVVIMQGYGLTESTAIGASTDCLEESRRYGTAGLISPSIEAKIVDPETGNVLGVNQTGELWLRGHTVMKGYFNNQEATVSTLTSDGWLKTGDVCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPVPDKNVGQFPMAYVVRKAGSSLSENEIMDFVTKQVAPYKRIRRVAFIDSVPKNASGKILRKDLIKLATSGSKL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18545.1 vs. NCBI nr
Match: gi|902219096|gb|KNA18219.1| (hypothetical protein SOVF_072660 [Spinacia oleracea]) HSP 1 Score: 588.2 bits (1515), Expect = 8.400e-165 Identity = 298/299 (99.67%), Postives = 298/299 (99.67%), Query Frame = 1
BLAST of Spo18545.1 vs. NCBI nr
Match: gi|731362354|ref|XP_010692849.1| (PREDICTED: 4-coumarate--CoA ligase-like 5 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 538.1 bits (1385), Expect = 1.000e-149 Identity = 269/299 (89.97%), Postives = 286/299 (95.65%), Query Frame = 1
BLAST of Spo18545.1 vs. NCBI nr
Match: gi|698569948|ref|XP_009774473.1| (PREDICTED: 4-coumarate--CoA ligase-like 5 [Nicotiana sylvestris]) HSP 1 Score: 481.9 bits (1239), Expect = 8.500e-133 Identity = 233/295 (78.98%), Postives = 270/295 (91.53%), Query Frame = 1
BLAST of Spo18545.1 vs. NCBI nr
Match: gi|747046422|ref|XP_011099557.1| (PREDICTED: 4-coumarate--CoA ligase-like 5 [Sesamum indicum]) HSP 1 Score: 478.8 bits (1231), Expect = 7.200e-132 Identity = 231/295 (78.31%), Postives = 265/295 (89.83%), Query Frame = 1
BLAST of Spo18545.1 vs. NCBI nr
Match: gi|595644671|gb|AHM88424.1| (4CL6 [Fraxinus mandshurica]) HSP 1 Score: 478.0 bits (1229), Expect = 1.200e-131 Identity = 235/295 (79.66%), Postives = 265/295 (89.83%), Query Frame = 1
BLAST of Spo18545.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGY1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_072660 PE=4 SV=1) HSP 1 Score: 588.2 bits (1515), Expect = 5.900e-165 Identity = 298/299 (99.67%), Postives = 298/299 (99.67%), Query Frame = 1
BLAST of Spo18545.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHP8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g022990 PE=4 SV=1) HSP 1 Score: 538.1 bits (1385), Expect = 7.000e-150 Identity = 269/299 (89.97%), Postives = 286/299 (95.65%), Query Frame = 1
BLAST of Spo18545.1 vs. UniProtKB/TrEMBL
Match: X2EXY4_9LAMI (4CL6 OS=Fraxinus mandshurica GN=4CL6 PE=2 SV=1) HSP 1 Score: 478.0 bits (1229), Expect = 8.500e-132 Identity = 235/295 (79.66%), Postives = 265/295 (89.83%), Query Frame = 1
BLAST of Spo18545.1 vs. UniProtKB/TrEMBL
Match: A0A022PTG6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a003887mg PE=4 SV=1) HSP 1 Score: 476.5 bits (1225), Expect = 2.500e-131 Identity = 231/295 (78.31%), Postives = 266/295 (90.17%), Query Frame = 1
BLAST of Spo18545.1 vs. UniProtKB/TrEMBL
Match: K4DH24_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 476.1 bits (1224), Expect = 3.200e-131 Identity = 232/295 (78.64%), Postives = 265/295 (89.83%), Query Frame = 1
BLAST of Spo18545.1 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2) HSP 1 Score: 458.8 bits (1179), Expect = 4.800e-128 Identity = 226/299 (75.59%), Postives = 257/299 (85.95%), Query Frame = 1
BLAST of Spo18545.1 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1) HSP 1 Score: 442.2 bits (1136), Expect = 4.700e-123 Identity = 218/295 (73.90%), Postives = 250/295 (84.75%), Query Frame = 1
BLAST of Spo18545.1 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2) HSP 1 Score: 414.5 bits (1064), Expect = 1.000e-114 Identity = 202/293 (68.94%), Postives = 242/293 (82.59%), Query Frame = 1
BLAST of Spo18545.1 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1) HSP 1 Score: 412.5 bits (1059), Expect = 4.000e-114 Identity = 199/305 (65.25%), Postives = 248/305 (81.31%), Query Frame = 1
BLAST of Spo18545.1 vs. ExPASy Swiss-Prot
Match: 4CLL3_ARATH (4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2) HSP 1 Score: 405.2 bits (1040), Expect = 6.300e-112 Identity = 193/295 (65.42%), Postives = 238/295 (80.68%), Query Frame = 1
BLAST of Spo18545.1 vs. TAIR (Arabidopsis)
Match: AT1G20510.1 (OPC-8:0 CoA ligase1) HSP 1 Score: 458.8 bits (1179), Expect = 2.700e-129 Identity = 226/299 (75.59%), Postives = 257/299 (85.95%), Query Frame = 1
BLAST of Spo18545.1 vs. TAIR (Arabidopsis)
Match: AT1G20480.1 (AMP-dependent synthetase and ligase family protein) HSP 1 Score: 414.5 bits (1064), Expect = 5.900e-116 Identity = 202/293 (68.94%), Postives = 242/293 (82.59%), Query Frame = 1
BLAST of Spo18545.1 vs. TAIR (Arabidopsis)
Match: AT1G20500.1 (AMP-dependent synthetase and ligase family protein) HSP 1 Score: 412.5 bits (1059), Expect = 2.200e-115 Identity = 199/305 (65.25%), Postives = 248/305 (81.31%), Query Frame = 1
BLAST of Spo18545.1 vs. TAIR (Arabidopsis)
Match: AT5G38120.1 (AMP-dependent synthetase and ligase family protein) HSP 1 Score: 397.9 bits (1021), Expect = 5.700e-111 Identity = 192/299 (64.21%), Postives = 237/299 (79.26%), Query Frame = 1
BLAST of Spo18545.1 vs. TAIR (Arabidopsis)
Match: AT5G63380.1 (AMP-dependent synthetase and ligase family protein) HSP 1 Score: 341.7 bits (875), Expect = 4.800e-94 Identity = 160/291 (54.98%), Postives = 222/291 (76.29%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18545.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18545.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18545.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo18545.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|