Spo18543 (gene)

Overview
NameSpo18543
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionABC transporter family protein
Locationchr5 : 68571688 .. 68573034 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTTCTCACCGCTTTTGGATTCCATATCCTCAACGAAGCATCATATGGGTTCATGTCATTCAAGCAAGTATTGGGTGAAGCAGCGAATTTGGAAAAAGCTTTTGTTATCTTAGGGGTAAGGTTGCGTACATTCGATTTCCGACCAAGGTAATTGGAAATAGCCTATAGGGGTAAGGTTGTATACAAATTATTTGCCTTAACCTGGCCATGGCGAGAGCGCGTTAGGGTAACATTGGTATTTGAAACAATTGGTTGAGCATAAGAGTTTGTGTTTTTTGATTGGTTGTAATGGTGCAGATATTGGCTGGCCTCTTGAAAACAAATGATGGGAATGTTTATGTTAAGAAGCCAAAAAACTTTGTATTCCAGAACCCAGATCATTGGGTTAGTTTTGGGTCTTGTGGCTGGCTTATTTTGTATGAATAAAGTGATGTGATGTTTGTGCTTGGTTTTGTTGCTGCATTAGTTAATGATCTCATCTTCGCAAGTTCTCCATTTCACGTGTGATCATAAGATCATCTATATGAGCCTTATTATATGTTGAGTATAAGAATCATAACTATGATACTGGGAAAGTATTCATGTCTGATCATAGCTGAAATATGTCACTTTTGAATTAAGACCAAAGATTTACTTGAATTCCTGGATTTACGCATACATCTGAATCTGATTCTAATGCTGGAGGCCTAGTAAATTTTAATTGTAAAGAACGAAATATCAATGATCTGTTATATGTGATGAAGAATCAGATGGTCGCTTGGAGAACTAAATGCATTTGAATGTCATGAATATGCTCGAAAATAATTTATGTAAAGACGAAATTGATGTGTTGATACTTCAAAGGTCTCTCCTATGTTGTGGATGCTGGCAAGAATATTTGTTAAGATATGCGGAGTTTAATAACTATTTGAGTTATACCAAAACCAGGAACTTTGACCACCATTTCTGATGATTATTAATCTTATTGTTTCTTAGTTTTTTCTCCTTAATCCATAGGTTTCGTTTTATGTATCTTACTGAGTTCCTAGTTTGCAGTTGACGTATAGAGGAGTCACTTGCAAATCTGCCTAACAGTGATTGCTTCTGTTCGGTTTGAAAATCTGTTAGTGTGTAATTCTCTGTTAAGCTTCTCAAATAAAAAAAAATACTCCTTAGGTTTCTGTCCTTCTTGTCAGAGACCGAGTATTGGCAAGTAAAACTATAAAAAAATGAAGGATCCAAATCAGCGGCTTGGTTTATTGAATACCGAATAGATCATAACTTGTGTATGGTATTGGTTGCTGAGGCTTTCCAGTTTCCATTATGTATTTCATAGATTTTTTTTGTTTTTTTACAGACATGA

mRNA sequence

ATGAATGTTCTCACCGCTTTTGGATTCCATATCCTCAACGAAGCATCATATGGGTTCATGTCATTCAAGCAAGTATTGGGTGAAGCAGCGAATTTGGAAAAAGCTTTTGTTATCTTAGGGATATTGGCTGGCCTCTTGAAAACAAATGATGGGAATGTTTATGTTAAGAAGCCAAAAAACTTTGTATTCCAGAACCCAGATCATTGGACATGA

Coding sequence (CDS)

ATGAATGTTCTCACCGCTTTTGGATTCCATATCCTCAACGAAGCATCATATGGGTTCATGTCATTCAAGCAAGTATTGGGTGAAGCAGCGAATTTGGAAAAAGCTTTTGTTATCTTAGGGATATTGGCTGGCCTCTTGAAAACAAATGATGGGAATGTTTATGTTAAGAAGCCAAAAAACTTTGTATTCCAGAACCCAGATCATTGGACATGA

Protein sequence

MNVLTAFGFHILNEASYGFMSFKQVLGEAANLEKAFVILGILAGLLKTNDGNVYVKKPKNFVFQNPDHWT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo18543.1Spo18543.1mRNA


Homology
[Close]
BLAST of Spo18543.1 vs. NCBI nr
Match: gi|902192147|gb|KNA11975.1| (hypothetical protein SOVF_129700 [Spinacia oleracea])

HSP 1 Score: 82.4 bits (202), Expect = 3.400e-13
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 

		  

Query: 1  MNVLTAFGFHILNEASYGFMSFKQVLGEAANLEKAFVILGI 42
          MNVLTAFGFHILNEASYGFMSFKQVLGEAANLEKAFVILG+
Sbjct: 1  MNVLTAFGFHILNEASYGFMSFKQVLGEAANLEKAFVILGV 41
[Close]
BLAST of Spo18543.1 vs. NCBI nr
Match: gi|902205552|gb|KNA15195.1| (hypothetical protein SOVF_100580 [Spinacia oleracea])

HSP 1 Score: 62.8 bits (151), Expect = 2.800e-7
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 1 

		  

Query: 38  ILGILAGLLKTNDGNVYVKKPKNFVFQNPDH 69
           +L ILAGLLKTNDGNVYVKKPK+FVFQNPDH
Sbjct: 80  LLKILAGLLKTNDGNVYVKKPKSFVFQNPDH 110
[Close]
BLAST of Spo18543.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXJ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129700 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.400e-13
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 

		  

Query: 1  MNVLTAFGFHILNEASYGFMSFKQVLGEAANLEKAFVILGI 42
          MNVLTAFGFHILNEASYGFMSFKQVLGEAANLEKAFVILG+
Sbjct: 1  MNVLTAFGFHILNEASYGFMSFKQVLGEAANLEKAFVILGV 41
[Close]
BLAST of Spo18543.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6Q9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_100580 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.900e-7
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 1 

		  

Query: 38  ILGILAGLLKTNDGNVYVKKPKNFVFQNPDH 69
           +L ILAGLLKTNDGNVYVKKPK+FVFQNPDH
Sbjct: 80  LLKILAGLLKTNDGNVYVKKPKSFVFQNPDH 110
[Close]
BLAST of Spo18543.1 vs. TAIR (Arabidopsis)
Match: AT4G33460.1 (ABC transporter family protein)

HSP 1 Score: 48.5 bits (114), Expect = 1.900e-6
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 1 

		  

Query: 38  ILGILAGLLKTNDGNVYVKKPKNFVFQNPDH 69
           +L ILAG++  + G V+V+KPKNFVFQNPDH
Sbjct: 86  LLKILAGVVNPSSGTVFVEKPKNFVFQNPDH 116
The following BLAST results are available for this feature:
BLAST of Spo18543.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902192147|gb|KNA11975.1|3.4e-1397.5hypothetical protein SOVF_1297... [more]
gi|902205552|gb|KNA15195.1|2.8e-790.3hypothetical protein SOVF_1005... [more]
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BLAST of Spo18543.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QXJ3_SPIOL2.4e-1397.5Uncharacterized protein OS=Spi... [more]
A0A0K9R6Q9_SPIOL1.9e-790.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo18543.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18543.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G33460.11.9e-664.5ABC transporter family protein[more]
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo137710.68Barchart | Table
Spo027490.67Barchart | Table