Spo14241 (gene)

Overview
NameSpo14241
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 3308655 .. 3310939 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTAGAACCAGTGATGATTATCCTAGAAGTTCCAAGGAGAGTAACTTGTTTTTTCTTTCTGATGGTGCATCTAGAAATTTCTCTTTAAAGTCCGAAAATGAACCTGAGTCTCCAAGAAAGATTGCAAAGGATTTGGTTGAAAGACTTATGAGGATAGAACAATTATGTGATCCAAAAAATCATGGAGATACTTCCCCCAATTGGGTAGATATGCCTACAACTCTACGTGACAAGCAATCATACAACATTGTTATGCTCCTACCCGAGTTGATATCTCAGAAAAAGATTTCCTCTCGAGAGGATATCTTTGAAAAGCATTTGGATGGCCAAAGTTCTACTTTGTTATCTGAAGAGAAGGAGGATCCCGCTGCTTTAGCATTGCATAGGAAATTATAAGAATTAAAAGAGAGGACACGGCTACTCTCTAAGCAGCTTGCTAAAGGTAGATCATTTCAGTATTACAGTGATGAGAATATTAGAAACCTTAACTGCTGATAGATTGTTGTTTCAATTGTTTGTCAATGTGTCTACTTCCATGCACTTGCTAACTTTTTCCATATTTGAGATTTGGCAGGGAATATATGGGTATCCAATTAAGAATCCAATTAAGAATCCAATTAAGATTCAGGCTCTTTACTTCTTTGCACTGAACAAAGAATTGCTGGACGAAATCAACACAAAGATCAAAGCACTAAGTTAGCTGGCTTGATCATACCCAATTGAATAACATATATGGCTATGAAACAGAAGAATACTCTCATAGTGCTTTAAAAAAGTTCAATTTAAAGGTATACTCTAACAACTCAAGGAGATGGTCGAATACGGTCCCAATATGTTTTTACAGCCCCTTATAGAGAATCGATGTAAACTAGATGAATTGAGAGATGATACTAACAACACCTCAATATGATAAATTGATAATGGTAGGTTTCAAATGCTCAATTATCATCAGAATAATAATTTGTGGGAAGAACTATATCAATAGCTAACACATTATATTACTAATTATCTAACCGAAAGTAGGATGCGTGTTGGATGTAAAAAAGCAGCTGTGACTGATATCAACGACTATTTCACTTTGATTTGGGGTTACATTTGATGGTTATTTGATTTGTGGTTTTTTTTGTTTTTGTTTTGATTGGTTCGTGTTGTTTTTGGAATTGGTTTTGTGGGTATTTGTTTAATTTGCTTGAATTGTTTGATTCTGAATTGAATTGTGCCAAGAGGGACTGAGGGGGTGAAGGAGAGAGAGAGTCTCCTGAGATTTCAAACAGTATAGTACGAATTAGTAGTTAGTTTCATTTCACAGTTGAATCACCATTTTGTGCTATAATGACAATTTTCTTCTTTGTTTTGTAGTCTCTGGTTATCCGATGAGTTATAGCAAGAATTTGCGAAGGCCTCCAACGTAAATGGAGTATAAATTGAACTTCTTTCCGGGTCAGTGTTTGCTATTGGTAGTTTGAATTGTAGCGTACAATGATCCTTCACTTATTGAAGAGAACATGGTTAAGCTTAAAGCTAAAGTTTTGCAGCTTATTGTATCACGTTCTTAAACTTTCAGACACCCAACCTCCAATTACATGATATTATTTTTAAAGGAAATACTCAATAAGATCTTCACAACATTATTCCTGATATGTAATAGAGTATTAGCCATATCTTTATATGACAGTGGGTATATGACATCCAGTTTTGATCTCATTCCATTTGTGAGTATGGCGAGGATCTGAGGATCATGTTCAATATAGCTGTAAATATGTTTAGGTGAAAGGGGGATTATTAAACAATATCTGTGCAGGTTAAGCTAATTAAGGTGGCTTAATGTGTTTACTGAATCGTTGGTGCACTCTCTGAGAGGGAGAGGGATAGAGGAGAGAGTCTCCTGAGATTTCAGTTTTAGTTTGGAGTAATGGTAATTTTGAATAACTTGTGTTGATTTTAGTATTAAATGTATTATTTTTAATTATCATATACTTTATGCCCATTTTCTGTCGATGGTGCTGTTGGGACTTATAGCATATTAGCCTTGTCCATTTTCCAAGTTTGTAAGGATTTGGGCAGGGAAGGAAAAGGAGGTTACCTTTAGTGCACTGAAGATTAGTACTTGAGATTGTTGATTCTTTGTATACCATTAAATGTTCTACGGTCTCTTGTTAATAATATTGAATTCTACTTTTTTTTGGTGTTAATATCTTGCTTGCAGTTGCAGACATTGGATTAGTATAAAGTCTACAAGACTAAAAAGTGCTGTCAGGGGTGCAATCAATTTTAATTAA

mRNA sequence

ATGAAGCTTAGAACCAGTGATGATTATCCTAGAAGTTCCAAGGAGAGTAACTTGTTTTTTCTTTCTGATGGTGCATCTAGAAATTTCTCTTTAAAGTCCGAAAATGAACCTGAGTCTCCAAGAAAGATTGCAAAGGATTTGGTTGAAAGACTTATGAGGATAGAACAATTATGTGATCCAAAAAATCATGGAGATACTTCCCCCAATTGGGTAGATATGCCTACAACTCTACGTGACAAGCAATCATACAACATTGTTATGCTCCTACCCGAGTTGATATCTCAGAAAAAGATTTCCTCTCGAGAGGATATCTTTGAAAAGCATTTGGATGGCCAAATCTCTGGTTATCCGATGAGTTATAGCAAGAATTTGCGAAGGCCTCCAACTTGCAGACATTGGATTAGTATAAAGTCTACAAGACTAAAAAGTGCTGTCAGGGGTGCAATCAATTTTAATTAA

Coding sequence (CDS)

ATGAAGCTTAGAACCAGTGATGATTATCCTAGAAGTTCCAAGGAGAGTAACTTGTTTTTTCTTTCTGATGGTGCATCTAGAAATTTCTCTTTAAAGTCCGAAAATGAACCTGAGTCTCCAAGAAAGATTGCAAAGGATTTGGTTGAAAGACTTATGAGGATAGAACAATTATGTGATCCAAAAAATCATGGAGATACTTCCCCCAATTGGGTAGATATGCCTACAACTCTACGTGACAAGCAATCATACAACATTGTTATGCTCCTACCCGAGTTGATATCTCAGAAAAAGATTTCCTCTCGAGAGGATATCTTTGAAAAGCATTTGGATGGCCAAATCTCTGGTTATCCGATGAGTTATAGCAAGAATTTGCGAAGGCCTCCAACTTGCAGACATTGGATTAGTATAAAGTCTACAAGACTAAAAAGTGCTGTCAGGGGTGCAATCAATTTTAATTAA

Protein sequence

MKLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDPKNHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQISGYPMSYSKNLRRPPTCRHWISIKSTRLKSAVRGAINFN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo14241.1Spo14241.1mRNA


Homology
[Close]
BLAST of Spo14241.1 vs. NCBI nr
Match: gi|902170685|gb|KNA07882.1| (hypothetical protein SOVF_167800 [Spinacia oleracea])

HSP 1 Score: 226.9 bits (577), Expect = 2.400e-56
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 1 

		  

Query: 1   MKLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDP 60
           MKLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDP
Sbjct: 1   MKLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDP 60

Query: 61  KNHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQIS 115
           KNHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQ S
Sbjct: 61  KNHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQSS 114
[Close]
BLAST of Spo14241.1 vs. NCBI nr
Match: gi|902165414|gb|KNA07103.1| (hypothetical protein SOVF_174980 [Spinacia oleracea])

HSP 1 Score: 144.4 bits (363), Expect = 1.600e-31
Identity = 78/114 (68.42%), Postives = 87/114 (76.32%), Query Frame = 1 

		  

Query: 1   MKLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDP 60
           MKL TSD YPRSSKESNLFFLS    RN+SLKSEN+PESPRKIAKD+VERL+RIEQLCDP
Sbjct: 190 MKLGTSDYYPRSSKESNLFFLS----RNYSLKSENQPESPRKIAKDVVERLLRIEQLCDP 249

Query: 61  KNHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQIS 115
           K+HGDT PNWV+MPTT+ DKQS            Q    +R DI +KHLDGQ S
Sbjct: 250 KSHGDTCPNWVEMPTTVCDKQSDR----------QCYDPTRVDILDKHLDGQSS 289
[Close]
BLAST of Spo14241.1 vs. NCBI nr
Match: gi|731324958|ref|XP_010673253.1| (PREDICTED: kinectin-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.0 bits (227), Expect = 9.300e-16
Identity = 55/111 (49.55%), Postives = 67/111 (60.36%), Query Frame = 1 

		  

Query: 2   KLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDPK 61
           K   S  YPRSSKE +LFF SD  SR +SL+S+N+ ESPRK+AKD+VERL+RIE LCDPK
Sbjct: 184 KFGISSLYPRSSKERDLFFSSDVTSREYSLESKNQHESPRKLAKDVVERLLRIEHLCDPK 243

Query: 62  NHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQ 113
             GD             D Q        P +   +K S  EDI +KHLDG+
Sbjct: 244 KRGDKD----------LDGQRCK-----PTVDISEKNSPLEDILDKHLDGK 279
[Close]
BLAST of Spo14241.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKW2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_167800 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.700e-56
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 1 

		  

Query: 1   MKLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDP 60
           MKLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDP
Sbjct: 1   MKLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDP 60

Query: 61  KNHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQIS 115
           KNHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQ S
Sbjct: 61  KNHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQSS 114
[Close]
BLAST of Spo14241.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QK85_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_174980 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.100e-31
Identity = 78/114 (68.42%), Postives = 87/114 (76.32%), Query Frame = 1 

		  

Query: 1   MKLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDP 60
           MKL TSD YPRSSKESNLFFLS    RN+SLKSEN+PESPRKIAKD+VERL+RIEQLCDP
Sbjct: 190 MKLGTSDYYPRSSKESNLFFLS----RNYSLKSENQPESPRKIAKDVVERLLRIEQLCDP 249

Query: 61  KNHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQIS 115
           K+HGDT PNWV+MPTT+ DKQS            Q    +R DI +KHLDGQ S
Sbjct: 250 KSHGDTCPNWVEMPTTVCDKQSDR----------QCYDPTRVDILDKHLDGQSS 289
[Close]
BLAST of Spo14241.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CMG9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064540 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.500e-16
Identity = 55/111 (49.55%), Postives = 67/111 (60.36%), Query Frame = 1 

		  

Query: 2   KLRTSDDYPRSSKESNLFFLSDGASRNFSLKSENEPESPRKIAKDLVERLMRIEQLCDPK 61
           K   S  YPRSSKE +LFF SD  SR +SL+S+N+ ESPRK+AKD+VERL+RIE LCDPK
Sbjct: 184 KFGISSLYPRSSKERDLFFSSDVTSREYSLESKNQHESPRKLAKDVVERLLRIEHLCDPK 243

Query: 62  NHGDTSPNWVDMPTTLRDKQSYNIVMLLPELISQKKISSREDIFEKHLDGQ 113
             GD             D Q        P +   +K S  EDI +KHLDG+
Sbjct: 244 KRGDKD----------LDGQRCK-----PTVDISEKNSPLEDILDKHLDGK 279
The following BLAST results are available for this feature:
BLAST of Spo14241.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902170685|gb|KNA07882.1|2.4e-5699.1hypothetical protein SOVF_1678... [more]
gi|902165414|gb|KNA07103.1|1.6e-3168.4hypothetical protein SOVF_1749... [more]
gi|731324958|ref|XP_010673253.1|9.3e-1649.5PREDICTED: kinectin-like [Beta... [more]
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BLAST of Spo14241.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QKW2_SPIOL1.7e-5699.1Uncharacterized protein OS=Spi... [more]
A0A0K9QK85_SPIOL1.1e-3168.4Uncharacterized protein OS=Spi... [more]
A0A0J8CMG9_BETVU6.5e-1649.5Uncharacterized protein OS=Bet... [more]
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BLAST of Spo14241.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo14241.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
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