Spo11213 (gene) | SpinachBase

Overview


Name	Spo11213
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 10996699 .. 10999725 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTATTCAAGTGTATGTAGTTAACTTTATTCTATAATTTGTTTCTGTTGATCACCGAAGCCTAATTCTTTTCTCGTTTCCTCTTGATGAGTCATAAAAACAATTGTTTAAGAGAAGTCAACTTGTACAGAAACTGATTCCTTTCCTTCACTTGCGCACTACACACATCACCTCGCCTCTCCCTCCTTCCTGCTCCTTGCGTCGCCACCCCGCCAGTCGTTTCCCTCTCATCGGCGACACTGGTTCGTTGTTGTTGCGTTGGTTCTGCTGCTGTTCCCCTCTCTCGTCTCTCCTCCATCTCGTCCCTCTTCCATCTCGTCCAAGCTTCGTGATGCCGCCGCCGATGGTGGCCGCTAAACCACCCTCATCTAGACGCCCTCTTCAATTGGTAAACCATCTAAATCCTTCCATAAATTGATTGAATTAAATTATGATTTAAAATTCCAAACCCTAACTAATTGAATTTCTCTCTCCTCTTGTGGGTGCGCTATCCCTTTGGGTTGCCGGTGCGATGGTGTTCCATCGCCGTTGTCGTATTTTGTTGGAGGTTGATCGGTGTTGATCGTTGTGTTCTTGTTCCTCTCCTCGACTCATCTCCCCTGCTTCACTCCTCTACCTCTCCTCTCCTCCGCTAGACTCACGGAGGGCCACCCCTCGTGGCTCTGCCGGAGCTGCTCCTGCTGCTATTCCGTTGATATTGTTGTTGTGTTATCTGTCTTATGGTTGTTGTTGTTGCTACTTCCCTGCCTCTCTATTTCTCTTATGGGTATAATCTCAAACCCTACTTATTTCTTATTGATGATTTTGTTACCTGGGAAAATGGAAGTCATGTTTAATAAATATAGTAATGATTCCAAATATTTGGTGACTTCACCAGTTATAATTATAAATTTAATATCTTTGCCTTTTGGTTCTAGAAGATGACAGTAATGCCCAATTCTTGTGTGGGGAATCTATTTCCCTATTGTCACTATGTTTTTAACCGTGTTCTGAAATTCACATTTCTCATCCCTGTTTCAACTAAGCTAAAACAGGTTTCCATTTTTTCCCCTCAATTTGTTTGGAATTATTTGGATATGTCACGAGCCTTAAGTAAAAAATCAATGCTACCTGAATTAGAGGTTGTGTTGATGTTAAACCATTTATGCAAGATACCTGAGTTCTAGTGTTCTCTTAAATATGGAATTGGGTTTGGCATCATAAAAAAGGGGTTTGAGTAAGTTCTGCATATGTAACACTACTAGATTTTATACATTTAATGAGAACATATTAAATATGAAAGTATATTATGGCCATTGGTGCTACGTTTGGCTGAAGATTCATCAATTACATTGACTTGACAGCTGAAGATCTTTATGTCGTCGCATTACAAGATTGTAAAAACCCCTGCAAATTAAAATTCCGTAATCTTGAAACAAATTGAGAGATTTCATACCTTCTCATTATTTGAATATATTACAGGAATCAGGCAGAGCAAAGTACTATTTTTAATGGGCAATAATATCCAGCTAGAGACTTTGGTTAGTGTAGATTTGAGGCAGTCGTGAAGGCAGCTAGCAAACATCAACACAACTATGAGGCTATCAACCCAGGTATATGTAAGAAATTATATGAGGCGAATTGCTCAGGAAAAGGTTATCTATGAACCTGTGGCGCCAAATAGTAAGAATAAGGATAAGGGTGTTTAATGTCACCTTGAACTTTTTTGCTCTACAAGCTAAGGATATACTTTCTCCATTTCGAACTTGTACTCTACAATTAATAATCCATTACTTTACTTTACTTTACTTTGTGGGATGCATTAAATTTCAATTTTATGATTTATATGCAAAATTTCTTAGTTTGAAGTTTCTTTGGCTAATTGGTTCATTGATTTTTTGATTAGTAGAGAAATGCGTGCATTATAAGATACAAATAGTTCTTATTTACAAGGTTGCAATAACCAATTAATGAAATATATGAAACTGTGGCATACATATTGTAAAAACATTGTCTGCATGATATGATATGATACTCTATGTACCCTGCAGTATCAGTGACAAATAAACCGTACTTATAATCCCCACATACCTGGTCCAAATGTTAAAAAGTCCATATAATACTTTTTACTCAAGGTTGCTAATTGGTTCATTGTTGATAAAAATGCCTGATAGATAACTTGTTTCTGCGTAGTGAGGTTGAGTTATCTTGTATTTTTGTTGATATTCTTGCTCATAAAATTGTTTCAGTTATTAATCTAAGCTTATAATGTCTTAGGTGTTTGTTAAGCTTTTCCCCCCCTGATATTTGGAAAGTGGTTGATTGCAACTTACACACTACTATAATTAAACTGTCACTTGGTTGATTGCATGTAGTGTTGGTGTTTATATGATTGCCACTTATGTGCTATAGTTACTTTTTCTATATTATTTTATTCTATGATAAATTAAATAGGACATTAGCATAAATTTTATATGGTTGGCCTGATTTCTCTACTGCATGTATCTATTATTAGTGTATTGGTGGATGGTGTTTCTTTTTTATTGTCTGTTGCTCGATTCTATTCTGCTCGTTGTATATCTTGTTCATTTGGCTTTGGTATCTCAGTCTAGGCTGCAACGATTGTGCTCCTGGTGCTCTGTCTTTTGATGTCCTCTTCTGATGGCCTGCTGGTTTGATGTGATGTTGTTTTGTTCTACTAAGTGGTGTTGATTGGTCTACTCCTGCTAATCTGCACTTTGCTGTCGTGTGATCTGCTGTCTTTTCTGCACATTGTTGCTGTTTTTCTTGAAGATTGAAGGCGACCCAAATGAGGAGTTATATGTAGGATGCGGTGTGGTTAGTTTGGATCAAAACTTTGTTAGACCAACGTTAACTTGGTTTGCCTTTGGTTATTTATTTTTTAATTTTTTAGTGGTTTTTGTAGTTTTGGGCTTGTAGGTTGTTGCAAGGCCCTGGGGTTTGATTGGTTGAGCTTGTACAAAAATTGGTTTGTTTTAGTTCATAATATATTTGGAGTTATTAAATTTATGATTTCCATAAAAA

mRNA sequence

ATGAATTATTCAAGTAAACTGATTCCTTTCCTTCACTTGCGCACTACACACATCACCTCGCCTCTCCCTCCTTCCTGCTCCTTGCGTCGCCACCCCGCCAGTCGTTTCCCTCTCATCGGCGACACTGGTTCGTTGTTGTTGCGTTGGTTCTGCTGCTGTTCCCCTCTCTCGTCTCTCCTCCATCTCGTCCCTCTTCCATCTCGTCCAAGCTTCGTGATGCCGCCGCCGATGGTGGCCGCTAAACCACCCTCATCTAGACGCCCTCTTCAATTGGTTGATCGGTGTTGATCGTTGTGTTCTTGTTCCTCTCCTCGACTCATCTCCCCTGCTTCACTCCTCTACCTCTCCTCTCCTCCGCTAGACTCACGGAGGGCCACCCCTCGTGGCTCTGCCGGAGCTGCTCCTGCTGCTATTCCGTTGATATTGTTGTTGTGTTATCTGTCTTATGGTTGTTGTTGTTGCTACTTCCCTGCCTCTCTATTTCTCTTATGGGAATCAGGCAGAGCAAAGTACTATTTTTAATGGGCAATAATATCCAGCTAGAGACTTTGGTTAGTGTAGATTTGAGGCAGTCGTGAAGGCAGCTAGCAAACATCAACACAACTATGAGGCTATCAACCCAGTCTAGGCTGCAACGATTGTGCTCCTGGTGCTCTGTCTTTTGATGTCCTCTTCTGATGGCCTGCTGGTTTGATGTGATGTTGTTTTGTTCTACTAAGTGGTGTTGATTGGTCTACTCCTGCTAATCTGCACTTTGCTGTCGTGTGATCTGCTGTCTTTTCTGCACATTGTTGCTGTTTTTCTTGAAGATTGAAGGCGACCCAAATGAGGAGTTATATGTAGGATGCGGTGTGGTTAGTTTGGATCAAAACTTTGTTAGACCAACGTTAACTTGGTTTGCCTTTGGTTATTTATTTTTTAATTTTTTAGTGGTTTTTGTAGTTTTGGGCTTGTAGGTTGTTGCAAGGCCCTGGGGTTTGATTGGTTGAGCTTGTACAAAAATTGGTTTGTTTTAGTTCATAATATATTTGGAGTTATTAAATTTATGATTTCCATAAAAA

Coding sequence (CDS)

ATGAATTATTCAAGTAAACTGATTCCTTTCCTTCACTTGCGCACTACACACATCACCTCGCCTCTCCCTCCTTCCTGCTCCTTGCGTCGCCACCCCGCCAGTCGTTTCCCTCTCATCGGCGACACTGGTTCGTTGTTGTTGCGTTGGTTCTGCTGCTGTTCCCCTCTCTCGTCTCTCCTCCATCTCGTCCCTCTTCCATCTCGTCCAAGCTTCGTGATGCCGCCGCCGATGGTGGCCGCTAAACCACCCTCATCTAGACGCCCTCTTCAATTGGTTGATCGGTGTTGA

Protein sequence

MNYSSKLIPFLHLRTTHITSPLPPSCSLRRHPASRFPLIGDTGSLLLRWFCCCSPLSSLLHLVPLPSRPSFVMPPPMVAAKPPSSRRPLQLVDRC

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11213.1	Spo11213.1	mRNA

Homology

[Close]

BLAST of Spo11213.1 vs. NCBI nr
Match: gi|902225970|gb|KNA20247.1| (hypothetical protein SOVF_054270, partial [Spinacia oleracea])

HSP 1 Score: 60.8 bits (146), Expect = 1.400e-6
Identity = 39/65 (60.00%), Postives = 40/65 (61.54%), Query Frame = 1

		  
Query: 27 SLRRHPASRFPLIGDTGSLLLRWFCCCSPLSSLLHLVPLPSRPSFVMPPPMVAAKPPSSR 86
          S RR  AS F L GD  S      CCC   S+   LV   SRPSFVMPPPMVAAKPPSSR
Sbjct: 2  SPRRRAASHFHLAGDADSAAEDVRCCCVD-SAAAPLVSPSSRPSFVMPPPMVAAKPPSSR 61

Query: 87 RPLQL 92
            LQL
Sbjct: 62 PHLQL 65

[Close]

BLAST of Spo11213.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RN32_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_054270 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.000e-6
Identity = 39/65 (60.00%), Postives = 40/65 (61.54%), Query Frame = 1

		  
Query: 27 SLRRHPASRFPLIGDTGSLLLRWFCCCSPLSSLLHLVPLPSRPSFVMPPPMVAAKPPSSR 86
          S RR  AS F L GD  S      CCC   S+   LV   SRPSFVMPPPMVAAKPPSSR
Sbjct: 2  SPRRRAASHFHLAGDADSAAEDVRCCCVD-SAAAPLVSPSSRPSFVMPPPMVAAKPPSSR 61

Query: 87 RPLQL 92
            LQL
Sbjct: 62 PHLQL 65

The following BLAST results are available for this feature:

BLAST of Spo11213.1 vs. NCBI nr
BLAST of Spo11213.1 vs. UniProtKB/TrEMBL
BLAST of Spo11213.1 vs. ExPASy Swiss-Prot
BLAST of Spo11213.1 vs. TAIR (Arabidopsis)

BLAST of Spo11213.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902225970\|gb\|KNA20247.1\|	1.4e-6	60.0	hypothetical protein SOVF_0542...	[more]

BLAST of Spo11213.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RN32_SPIOL	1.0e-6	60.0	Uncharacterized protein (Fragm...	[more]

BLAST of Spo11213.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo11213.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0016998	cell wall macromolecule catabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0009249	protein lipoylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006733	oxidoreduction coenzyme metabolic process
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0009107	lipoate biosynthetic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016992	lipoate synthase activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016491	oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo19482	0.72	Barchart \| Table
Spo18782	0.71	Barchart \| Table
Spo25347	0.70	Barchart \| Table
Spo28058	0.70	Barchart \| Table
Spo18691	0.69	Barchart \| Table
Spo11967	0.68	Barchart \| Table
Spo06473	0.67	Barchart \| Table
Spo08572	0.67	Barchart \| Table
Spo09290	0.67	Barchart \| Table
Spo05073	0.67	Barchart \| Table
Spo12755	0.67	Barchart \| Table
Spo01357	0.66	Barchart \| Table
Spo02107	0.66	Barchart \| Table
Spo05431	0.66	Barchart \| Table
Spo06806	0.66	Barchart \| Table
Spo13131	0.66	Barchart \| Table
Spo23610	0.66	Barchart \| Table
Spo07959	0.65	Barchart \| Table
Spo20946	0.65	Barchart \| Table
Spo02932	0.65	Barchart \| Table
Spo06235	0.65	Barchart \| Table
Spo11902	0.65	Barchart \| Table