Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGGCACGTCTCTTTGTATGTCTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCACCGGAATCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGACAAACCTGGTCATTTTCCAAGAACAATAGCTAAGGGCCTTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACAATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAATTTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAATGGTATGTATTTCCACGGTGCCCGTTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGTAGTTTGGCCGATAGTGGGTCAAGAAATATTGAATGGTGATGTAGGGGGAGGTTTCCGAGGAATACAAATAACCTCTGGGTTTTTTCAAATTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACCGCAATTGGTGCATTGGTCTTTGCAGCATTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATNATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCAAACCCTGCAACTGATGAGAAGGCCACCTGTAGCTCAGAGGATTAG ATGTTGGCACGTCTCTTTGTATGTCTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCACCGGAATCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGACAAACCTGGTCATTTTCCAAGAACAATAGCTAAGGGCCTTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACAATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAATTTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAATGGTATGTATTTCCACGGTGCCCGTTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGTAGTTTGGCCGATAGTGGGTCAAGAAATATTGAATGGTGATGTAGGGGGAGGTTTCCGAGGAATACAAATAACCTCTGGGTTTTTTCAAATTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACCGCAATTGGTGCATTGGTCTTTGCAGCATTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATNATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCAAACCCTGCAACTGATGAGAAGGCCACCTGTAGCTCAGAGGATTAG ATGTTGGCACGTCTCTTTGTATGTCTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCACCGGAATCAGAAGTAAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGACAAACCTGGTCATTTTCCAAGAACAATAGCTAAGGGCCTTGAAACTACTACATGGATCTGGAACCTACATGCTGATGCTCACAATTTCGATAGCCATACCAGCGATTTGGAGGAGATCTCCCGAAAATTTTTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAATGGTATGTATTTCCACGGTGCCCGTTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCACATTGGACCTAGTGCCCAAGTAGTTTGGCCGATAGTGGGTCAAGAAATATTGAATGGTGATGTAGGGGGAGGTTTCCGAGGAATACAAATAACCTCTGGGTTTTTTCAAATTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACCGCAATTGGTGCATTGGTCTTTGCAGCATTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATNATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCAAACCCTGCAACTGATGAGAAGGCCACCTGTAGCTCAGAGGATTAG MLARLFVCLVRKEEDSMIIRSPESEVKILVDRDPVKTSFEAWDKPGHFPRTIAKGLETTTWIWNLHADAHNFDSHTSDLEEISRKFFSAHFGQLSIIFLWLNGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVEXLSQSGSKISLVPRCGIYVESPNPATDEKATCSSED Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25538.1 vs. NCBI nr
Match: gi|870868638|gb|KMT19441.1| (hypothetical protein BVRB_1g010710 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 414.1 bits (1063), Expect = 1.700e-112 Identity = 198/210 (94.29%), Postives = 202/210 (96.19%), Query Frame = 1
BLAST of Spo25538.1 vs. NCBI nr
Match: gi|1012324803|gb|KYP36760.1| (Photosystem I P700 chlorophyll a apoprotein A1 family [Cajanus cajan]) HSP 1 Score: 407.9 bits (1047), Expect = 1.200e-110 Identity = 194/210 (92.38%), Postives = 201/210 (95.71%), Query Frame = 1
BLAST of Spo25538.1 vs. NCBI nr
Match: gi|290790781|gb|ADD63038.1| (photosystem I P700 apoprotein A1 (chloroplast) [Potamophila parviflora]) HSP 1 Score: 404.1 bits (1037), Expect = 1.800e-109 Identity = 190/209 (90.91%), Postives = 199/209 (95.22%), Query Frame = 1
BLAST of Spo25538.1 vs. NCBI nr
Match: gi|290790712|gb|ADD62970.1| (photosystem I P700 apoprotein A1 (chloroplast) [Oryza australiensis]) HSP 1 Score: 402.5 bits (1033), Expect = 5.200e-109 Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 1
BLAST of Spo25538.1 vs. NCBI nr
Match: gi|42795488|gb|AAS46055.1| (photosystem I P700 chlorophyll A apoprotein A1 (chloroplast) [Oryza sativa Indica Group]) HSP 1 Score: 402.5 bits (1033), Expect = 5.200e-109 Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 1
BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FUS3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g010710 PE=4 SV=1) HSP 1 Score: 414.1 bits (1063), Expect = 1.200e-112 Identity = 198/210 (94.29%), Postives = 202/210 (96.19%), Query Frame = 1
BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: A0A151R2J4_CAJCA (Photosystem I P700 chlorophyll a apoprotein A1 family OS=Cajanus cajan GN=KK1_042105 PE=4 SV=1) HSP 1 Score: 407.9 bits (1047), Expect = 8.600e-111 Identity = 194/210 (92.38%), Postives = 201/210 (95.71%), Query Frame = 1
BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: E9KJ95_9ORYZ (Photosystem I P700 chlorophyll a apoprotein A1 OS=Potamophila parviflora GN=psaA PE=3 SV=1) HSP 1 Score: 404.1 bits (1037), Expect = 1.200e-109 Identity = 190/209 (90.91%), Postives = 199/209 (95.22%), Query Frame = 1
BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: E9KIV9_9ORYZ (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza meridionalis GN=psaA PE=3 SV=1) HSP 1 Score: 402.5 bits (1033), Expect = 3.600e-109 Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 1
BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Match: E9KJ27_9ORYZ (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza australiensis GN=psaA PE=3 SV=1) HSP 1 Score: 402.5 bits (1033), Expect = 3.600e-109 Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 1
BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_SPIOL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea GN=psaA PE=3 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 1.700e-107 Identity = 185/194 (95.36%), Postives = 188/194 (96.91%), Query Frame = 1
BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_OENEH (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oenothera elata subsp. hookeri GN=psaA PE=3 SV=2) HSP 1 Score: 386.7 bits (992), Expect = 1.800e-106 Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1
BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_CITSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus sinensis GN=psaA PE=3 SV=1) HSP 1 Score: 386.7 bits (992), Expect = 1.800e-106 Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1
BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_AETCO (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium GN=psaA PE=3 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 2.400e-106 Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1
BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Match: PSAA_NASOF (Photosystem I P700 chlorophyll a apoprotein A1 OS=Nasturtium officinale GN=psaA PE=3 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 2.400e-106 Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1
BLAST of Spo25538.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein) HSP 1 Score: 386.3 bits (991), Expect = 1.400e-107 Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 1
BLAST of Spo25538.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein) HSP 1 Score: 114.0 bits (284), Expect = 1.300e-25 Identity = 68/169 (40.24%), Postives = 94/169 (55.62%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25538.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25538.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25538.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25538.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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