Spo23526 (gene) | SpinachBase

Overview


Name	Spo23526
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Rubredoxin, putative
Location	chr6 : 24353543 .. 24354160 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCCATTACAAGACCAACAACCTTCTCATTCCACCCTACTTCACCTTCTCCAACAAAACCCAGAACTCATTTCATCATATCACCAATCATTTCCCCTAAATCCTACCAAAATTACGCCATCAAGGCGAACCCGAATCGCCTCGATTTCGCCCGAAAATCAATTGATGTGTCAAAAGAAGATAAACCCACTTCAGAACAGCCAAATTTGGATAAACCCATTTCAGAGGAGCTCTATTTAGAGGAACCAAGTTCATCAGATACAGATAGTTTGGATAAACGAAGATTGGAAGAGAAATTCGCTGTTTTAAACACTGGGATTTATGAGTGTAGATCATGCGGGTATAGGTATGATGAAGCTGCAGGTGATCCAAGCTACCCTGTGCCACCAGGGTTGCCCTTTGGGAAGCTGCCTGAGGATTGGAGGTGCCCTACTTGTGGGGCCGCAAAGGGGTTTTTTGTGAGTAAGAGTGTAGAGATTGCTGGGTTTGCGCAAAATCAACAGTTTGGACTTGGGGGTAATTCTCTCACTTCTGGTCAGAAGGCTTTGTTTATTTATGGTAGTTTGTTCTTGTTCTTTTGCTTGTTTTTATCAGGCTACTTTTTGCCATAG

mRNA sequence

ATGGCTTCTTCCATTACAAGACCAACAACCTTCTCATTCCACCCTACTTCACCTTCTCCAACAAAACCCAGAACTCATTTCATCATATCACCAATCATTTCCCCTAAATCCTACCAAAATTACGCCATCAAGGCGAACCCGAATCGCCTCGATTTCGCCCGAAAATCAATTGATGTGTCAAAAGAAGATAAACCCACTTCAGAACAGCCAAATTTGGATAAACCCATTTCAGAGGAGCTCTATTTAGAGGAACCAAGTTCATCAGATACAGATAGTTTGGATAAACGAAGATTGGAAGAGAAATTCGCTGTTTTAAACACTGGGATTTATGAGTGTAGATCATGCGGGTATAGGTATGATGAAGCTGCAGGTGATCCAAGCTACCCTGTGCCACCAGGGTTGCCCTTTGGGAAGCTGCCTGAGGATTGGAGGTGCCCTACTTGTGGGGCCGCAAAGGGGTTTTTTGTGAGTAAGAGTGTAGAGATTGCTGGGTTTGCGCAAAATCAACAGTTTGGACTTGGGGGTAATTCTCTCACTTCTGGTCAGAAGGCTTTGTTTATTTATGGTAGTTTGTTCTTGTTCTTTTGCTTGTTTTTATCAGGCTACTTTTTGCCATAG

Coding sequence (CDS)

ATGGCTTCTTCCATTACAAGACCAACAACCTTCTCATTCCACCCTACTTCACCTTCTCCAACAAAACCCAGAACTCATTTCATCATATCACCAATCATTTCCCCTAAATCCTACCAAAATTACGCCATCAAGGCGAACCCGAATCGCCTCGATTTCGCCCGAAAATCAATTGATGTGTCAAAAGAAGATAAACCCACTTCAGAACAGCCAAATTTGGATAAACCCATTTCAGAGGAGCTCTATTTAGAGGAACCAAGTTCATCAGATACAGATAGTTTGGATAAACGAAGATTGGAAGAGAAATTCGCTGTTTTAAACACTGGGATTTATGAGTGTAGATCATGCGGGTATAGGTATGATGAAGCTGCAGGTGATCCAAGCTACCCTGTGCCACCAGGGTTGCCCTTTGGGAAGCTGCCTGAGGATTGGAGGTGCCCTACTTGTGGGGCCGCAAAGGGGTTTTTTGTGAGTAAGAGTGTAGAGATTGCTGGGTTTGCGCAAAATCAACAGTTTGGACTTGGGGGTAATTCTCTCACTTCTGGTCAGAAGGCTTTGTTTATTTATGGTAGTTTGTTCTTGTTCTTTTGCTTGTTTTTATCAGGCTACTTTTTGCCATAG

Protein sequence

MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVSKEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCGYRYDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLTSGQKALFIYGSLFLFFCLFLSGYFLP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo23526.1	Spo23526.1	mRNA

Homology

[Close]

BLAST of Spo23526.1 vs. NCBI nr
Match: gi|902180671|gb|KNA09593.1| (hypothetical protein SOVF_152210 [Spinacia oleracea])

HSP 1 Score: 411.4 bits (1056), Expect = 9.400e-112
Identity = 204/205 (99.51%), Postives = 204/205 (99.51%), Query Frame = 1

		  
Query: 1   MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS 60
           MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS
Sbjct: 1   MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS 60

Query: 61  KEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCGYRYD 120
           KEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGI ECRSCGYRYD
Sbjct: 61  KEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGICECRSCGYRYD 120

Query: 121 EAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLTS 180
           EAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLTS
Sbjct: 121 EAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLTS 180

Query: 181 GQKALFIYGSLFLFFCLFLSGYFLP 206
           GQKALFIYGSLFLFFCLFLSGYFLP
Sbjct: 181 GQKALFIYGSLFLFFCLFLSGYFLP 205

[Close]

BLAST of Spo23526.1 vs. NCBI nr
Match: gi|731328145|ref|XP_010674888.1| (PREDICTED: uncharacterized protein LOC104890964 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 288.9 bits (738), Expect = 7.000e-75
Identity = 147/205 (71.71%), Postives = 167/205 (81.46%), Query Frame = 1

		  
Query: 1   MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS 60
           MAS+ITRPTTFSFH +SPSP KP+ HF  S  IS K+++ + ++   N L+   KS+DVS
Sbjct: 1   MASAITRPTTFSFHLSSPSPPKPKLHFTTS-TISSKTHKFFPLQNTSNGLNLTPKSVDVS 60

Query: 61  KEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCGYRYD 120
           KED+P  E PN           EEPSSSD+++ DKRRLEEKFAVLNTGIYECRSCGY+YD
Sbjct: 61  KEDQPIIENPN----------SEEPSSSDSENFDKRRLEEKFAVLNTGIYECRSCGYKYD 120

Query: 121 EAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLTS 180
           E+AGDP+YPVPPGLPF +LPEDWRCPTCGAAK FF SKSVEIAGFAQNQQFGLGGNSLTS
Sbjct: 121 ESAGDPNYPVPPGLPFSQLPEDWRCPTCGAAKSFFDSKSVEIAGFAQNQQFGLGGNSLTS 180

Query: 181 GQKALFIYGSLFLFFCLFLSGYFLP 206
           GQKAL IYG+LF FF LFLSGYFLP
Sbjct: 181 GQKALLIYGALFAFFLLFLSGYFLP 194

[Close]

BLAST of Spo23526.1 vs. NCBI nr
Match: gi|225451241|ref|XP_002276406.1| (PREDICTED: uncharacterized protein LOC100259018 [Vitis vinifera])

HSP 1 Score: 248.8 bits (634), Expect = 8.100e-63
Identity = 134/208 (64.42%), Postives = 155/208 (74.52%), Query Frame = 1

		  
Query: 1   MASSITRPTTFSFHPTSP----SPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKS 60
           MA + TRPT FSFH ++     SP KP+ H    P + PK     A+   P +  F+ +S
Sbjct: 1   MACATTRPT-FSFHLSTTLPQQSPPKPKPHLTFPPHL-PKIPSISALH-KPPKAQFSSRS 60

Query: 61  IDVSKEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCG 120
           +DVSKEDKPTSEQP+   P S+          + ++ DKRRLEEKFAVLNTGIYECRSCG
Sbjct: 61  VDVSKEDKPTSEQPDSSTPTSDS------PPQEPENFDKRRLEEKFAVLNTGIYECRSCG 120

Query: 121 YRYDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGN 180
           Y+YDEAAGDPSYP+PPGL F KLP+DWRCPTCGAA+ FF SKSVEIAGFAQNQQFGLGGN
Sbjct: 121 YKYDEAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGN 180

Query: 181 SLTSGQKALFIYGSLFLFFCLFLSGYFL 205
           +LTSGQKA+ IYGSL  FF LFLSGYFL
Sbjct: 181 TLTSGQKAVLIYGSLLFFFVLFLSGYFL 199

[Close]

BLAST of Spo23526.1 vs. NCBI nr
Match: gi|802757898|ref|XP_012089210.1| (PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas])

HSP 1 Score: 247.3 bits (630), Expect = 2.300e-62
Identity = 137/205 (66.83%), Postives = 148/205 (72.20%), Query Frame = 1

		  
Query: 1   MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS 60
           MAS+ TRPT FSFH + P   +P THF  S  +S         K    +  F  +SIDVS
Sbjct: 1   MASATTRPT-FSFHLSHP---RPNTHFSKSSFLS-------LYKTPKTQTHFTIRSIDVS 60

Query: 61  KEDK-PTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCGYRY 120
           KEDK PTS Q ++  P      LE P   +    DKRRLEEKFAVLNTGIYECRSCGY+Y
Sbjct: 61  KEDKRPTSNQQSIPTP------LESPPQEEEPKFDKRRLEEKFAVLNTGIYECRSCGYKY 120

Query: 121 DEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLT 180
           DEA GDPSYP+PPGL F KLPEDWRCPTCGAAK FF SKSVEIAGFAQNQQFGLGGNSLT
Sbjct: 121 DEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLT 180

Query: 181 SGQKALFIYGSLFLFFCLFLSGYFL 205
           SGQKA  IYGSL LFF LFLSGYFL
Sbjct: 181 SGQKAALIYGSLLLFFALFLSGYFL 188

[Close]

BLAST of Spo23526.1 vs. NCBI nr
Match: gi|657992790|ref|XP_008388654.1| (PREDICTED: uncharacterized protein LOC103451011 [Malus domestica])

HSP 1 Score: 245.7 bits (626), Expect = 6.800e-62
Identity = 137/206 (66.50%), Postives = 152/206 (73.79%), Query Frame = 1

		  
Query: 6   TRPTTFSFHPTSPSPT----KPRTHFI---ISPIISPKSYQNYAIKANPNRLDFARKSID 65
           TRPT FSFH +   P     KPRT F    + P +   S     I   P++L  +  SID
Sbjct: 5   TRPT-FSFHLSXTFPQHSHPKPRTQFPYPHLLPKVQTFSLSLTHIPPKPHKL--SANSID 64

Query: 66  VSKEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCGYR 125
           VSKEDKPTSE+P    P S    +E     +T   DKRRLEEKFAVLNTG+YECRSCGY+
Sbjct: 65  VSKEDKPTSEEPTSPPPASSVDPVEPAEELET-KFDKRRLEEKFAVLNTGVYECRSCGYK 124

Query: 126 YDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSL 185
           YDEA GDPSYPVPPGLPF KLPEDWRCPTCGAA+GFFVSKSVEIAGFAQNQQFGLGGN+L
Sbjct: 125 YDEAMGDPSYPVPPGLPFDKLPEDWRCPTCGAAQGFFVSKSVEIAGFAQNQQFGLGGNTL 184

Query: 186 TSGQKALFIYGSLFLFFCLFLSGYFL 205
           TSGQKA+ I+G LFLFF LFLSGYFL
Sbjct: 185 TSGQKAVLIFGGLFLFFVLFLSGYFL 206

[Close]

BLAST of Spo23526.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSB2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_152210 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 6.500e-112
Identity = 204/205 (99.51%), Postives = 204/205 (99.51%), Query Frame = 1

		  
Query: 1   MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS 60
           MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS
Sbjct: 1   MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS 60

Query: 61  KEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCGYRYD 120
           KEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGI ECRSCGYRYD
Sbjct: 61  KEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGICECRSCGYRYD 120

Query: 121 EAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLTS 180
           EAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLTS
Sbjct: 121 EAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLTS 180

Query: 181 GQKALFIYGSLFLFFCLFLSGYFLP 206
           GQKALFIYGSLFLFFCLFLSGYFLP
Sbjct: 181 GQKALFIYGSLFLFFCLFLSGYFLP 205

[Close]

BLAST of Spo23526.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CN52_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g082380 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 4.900e-75
Identity = 147/205 (71.71%), Postives = 167/205 (81.46%), Query Frame = 1

		  
Query: 1   MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS 60
           MAS+ITRPTTFSFH +SPSP KP+ HF  S  IS K+++ + ++   N L+   KS+DVS
Sbjct: 1   MASAITRPTTFSFHLSSPSPPKPKLHFTTS-TISSKTHKFFPLQNTSNGLNLTPKSVDVS 60

Query: 61  KEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCGYRYD 120
           KED+P  E PN           EEPSSSD+++ DKRRLEEKFAVLNTGIYECRSCGY+YD
Sbjct: 61  KEDQPIIENPN----------SEEPSSSDSENFDKRRLEEKFAVLNTGIYECRSCGYKYD 120

Query: 121 EAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLTS 180
           E+AGDP+YPVPPGLPF +LPEDWRCPTCGAAK FF SKSVEIAGFAQNQQFGLGGNSLTS
Sbjct: 121 ESAGDPNYPVPPGLPFSQLPEDWRCPTCGAAKSFFDSKSVEIAGFAQNQQFGLGGNSLTS 180

Query: 181 GQKALFIYGSLFLFFCLFLSGYFLP 206
           GQKAL IYG+LF FF LFLSGYFLP
Sbjct: 181 GQKALLIYGALFAFFLLFLSGYFLP 194

[Close]

BLAST of Spo23526.1 vs. UniProtKB/TrEMBL
Match: F6HTU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01590 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.600e-63
Identity = 134/208 (64.42%), Postives = 155/208 (74.52%), Query Frame = 1

		  
Query: 1   MASSITRPTTFSFHPTSP----SPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKS 60
           MA + TRPT FSFH ++     SP KP+ H    P + PK     A+   P +  F+ +S
Sbjct: 1   MACATTRPT-FSFHLSTTLPQQSPPKPKPHLTFPPHL-PKIPSISALH-KPPKAQFSSRS 60

Query: 61  IDVSKEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCG 120
           +DVSKEDKPTSEQP+   P S+          + ++ DKRRLEEKFAVLNTGIYECRSCG
Sbjct: 61  VDVSKEDKPTSEQPDSSTPTSDS------PPQEPENFDKRRLEEKFAVLNTGIYECRSCG 120

Query: 121 YRYDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGN 180
           Y+YDEAAGDPSYP+PPGL F KLP+DWRCPTCGAA+ FF SKSVEIAGFAQNQQFGLGGN
Sbjct: 121 YKYDEAAGDPSYPIPPGLQFDKLPDDWRCPTCGAARSFFESKSVEIAGFAQNQQFGLGGN 180

Query: 181 SLTSGQKALFIYGSLFLFFCLFLSGYFL 205
           +LTSGQKA+ IYGSL  FF LFLSGYFL
Sbjct: 181 TLTSGQKAVLIYGSLLFFFVLFLSGYFL 199

[Close]

BLAST of Spo23526.1 vs. UniProtKB/TrEMBL
Match: A0A067JUG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23458 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.600e-62
Identity = 137/205 (66.83%), Postives = 148/205 (72.20%), Query Frame = 1

		  
Query: 1   MASSITRPTTFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANPNRLDFARKSIDVS 60
           MAS+ TRPT FSFH + P   +P THF  S  +S         K    +  F  +SIDVS
Sbjct: 1   MASATTRPT-FSFHLSHP---RPNTHFSKSSFLS-------LYKTPKTQTHFTIRSIDVS 60

Query: 61  KEDK-PTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTGIYECRSCGYRY 120
           KEDK PTS Q ++  P      LE P   +    DKRRLEEKFAVLNTGIYECRSCGY+Y
Sbjct: 61  KEDKRPTSNQQSIPTP------LESPPQEEEPKFDKRRLEEKFAVLNTGIYECRSCGYKY 120

Query: 121 DEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLT 180
           DEA GDPSYP+PPGL F KLPEDWRCPTCGAAK FF SKSVEIAGFAQNQQFGLGGNSLT
Sbjct: 121 DEAVGDPSYPIPPGLQFDKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQFGLGGNSLT 180

Query: 181 SGQKALFIYGSLFLFFCLFLSGYFL 205
           SGQKA  IYGSL LFF LFLSGYFL
Sbjct: 181 SGQKAALIYGSLLLFFALFLSGYFL 188

[Close]

BLAST of Spo23526.1 vs. UniProtKB/TrEMBL
Match: W9R6S1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006182 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.400e-61
Identity = 138/216 (63.89%), Postives = 154/216 (71.30%), Query Frame = 1

		  
Query: 1   MASSITRPTTFSFH------PTSPSPTKPRTHFIISPIISPK------SYQNYAIKANPN 60
           MA + TRPT FSFH       T   P    THF  +P + PK      S    A+   P 
Sbjct: 1   MACATTRPT-FSFHISTSFSQTCSLPKSKPTHFS-NPTLLPKIPSFSLSLPQKALNKPPK 60

Query: 61  RLDFARKSIDVSKEDKPTSEQPNLDKPISEELYLEEPSSSDTDSLDKRRLEEKFAVLNTG 120
              F   SIDVSKEDKPTS+Q +   P  EE   E+    + D+ DKRRLEEKFAVLNTG
Sbjct: 61  ---FITNSIDVSKEDKPTSDQTSSTPPQVEE-QPEKEQEQEQDTFDKRRLEEKFAVLNTG 120

Query: 121 IYECRSCGYRYDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQN 180
           IYECRSCGY+YDEA GDPSYP+PPGLPF KLPEDWRCPTCGA++ FF SKSVEIAGFAQN
Sbjct: 121 IYECRSCGYKYDEAVGDPSYPIPPGLPFEKLPEDWRCPTCGASQSFFESKSVEIAGFAQN 180

Query: 181 QQFGLGGNSLTSGQKALFIYGSLFLFFCLFLSGYFL 205
           QQFGLGGN+LTSGQKA+ IYG+LFLFF LFLSGYFL
Sbjct: 181 QQFGLGGNALTSGQKAILIYGTLFLFFVLFLSGYFL 210

[Close]

BLAST of Spo23526.1 vs. ExPASy Swiss-Prot
Match: RUBR_METTH (Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_155 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.200e-10
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 1

		  
Query: 110 YECRSCGYRYDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFF 156
           Y+CR CGY YD   G+P    PPG PF  LPE WRCP+CGA K  F
Sbjct: 14  YKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMF 59

[Close]

BLAST of Spo23526.1 vs. ExPASy Swiss-Prot
Match: HRB_MOOTA (High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073) GN=hrb PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.100e-10
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1

		  
Query: 110 YECRSCGYRYDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFF 156
           Y+C  C Y YD   GDP + + PG PF  LPEDW CP CGA K  F
Sbjct: 181 YQCTICNYVYDPVQGDPEHGIAPGTPFADLPEDWTCPICGAGKDAF 226

[Close]

BLAST of Spo23526.1 vs. ExPASy Swiss-Prot
Match: RUBR4_RHOSQ (Rubredoxin 4 OS=Rhodococcus sp. (strain Q15) GN=rubA4 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.900e-10
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1

		  
Query: 109 IYECRSCGYRYDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVE 162
           +Y+C  CG+ YDEA G P   + PG  +  +PEDW CP CGAAK  F    VE
Sbjct: 6   LYQCAQCGFEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVE 58

[Close]

BLAST of Spo23526.1 vs. ExPASy Swiss-Prot
Match: RUBR4_RHOER (Rubredoxin 4 OS=Rhodococcus erythropolis GN=rubA4 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.900e-10
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1

		  
Query: 109 IYECRSCGYRYDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVE 162
           +Y+C  CG+ YDEA G P   + PG  +  +PEDW CP CGAAK  F    VE
Sbjct: 6   LYQCAQCGFEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVE 58

[Close]

BLAST of Spo23526.1 vs. ExPASy Swiss-Prot
Match: RUBR_DESGI (Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-9
Identity = 26/47 (55.32%), Postives = 29/47 (61.70%), Query Frame = 1

		  
Query: 109 IYECRSCGYRYDEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFF 156
           IY C  CGY YD A GDP   + PG  F  LP+DW CP CGA+K  F
Sbjct: 3   IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAF 49

[Close]

BLAST of Spo23526.1 vs. TAIR (Arabidopsis)
Match: AT1G54500.1 (Rubredoxin-like superfamily protein)

HSP 1 Score: 198.0 bits (502), Expect = 5.800e-51
Identity = 110/205 (53.66%), Postives = 134/205 (65.37%), Query Frame = 1

		  
Query: 10  TFSFHPTSPSPTKPRTHFIISPIISPKSYQNYAIKANP---------NRLDFARKSIDVS 69
           TFSF P S S          S +I P  +  Y  K +          +      + + VS
Sbjct: 5   TFSFCPLSQSHPH-------SSLIKPTPFLRYGKKLHHLHHHIFITISYPSHHSRYLAVS 64

Query: 70  KEDKPTSEQPNLDKPISEELYLEEPSSSDT-DSLDKRRLEEKFAVLNTGIYECRSCGYRY 129
           ++D  T        P+S     +E  + +  D+++KRR+EEKFAVLNTGIYECRSCGY+Y
Sbjct: 65  RDDAAT--------PLSSSDQTQETETKEVEDTIEKRRMEEKFAVLNTGIYECRSCGYKY 124

Query: 130 DEAAGDPSYPVPPGLPFGKLPEDWRCPTCGAAKGFFVSKSVEIAGFAQNQQFGLGGNSLT 189
           DE+AGDPSYP+PPG  F KLPEDWRCPTCGAA+ FF SK VEIAGFAQNQQ+GLGGN+LT
Sbjct: 125 DESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNALT 184

Query: 190 SGQKALFIYGSLFLFFCLFLSGYFL 205
           SGQK   I+GSL LFF LFLSGYF+
Sbjct: 185 SGQKTGLIFGSLLLFFALFLSGYFI 194

The following BLAST results are available for this feature:

BLAST of Spo23526.1 vs. NCBI nr
BLAST of Spo23526.1 vs. UniProtKB/TrEMBL
BLAST of Spo23526.1 vs. ExPASy Swiss-Prot
BLAST of Spo23526.1 vs. TAIR (Arabidopsis)

BLAST of Spo23526.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902180671\|gb\|KNA09593.1\|	9.4e-112	99.5	hypothetical protein SOVF_1522...	[more]
gi\|731328145\|ref\|XP_010674888.1\|	7.0e-75	71.7	PREDICTED: uncharacterized pro...	[more]
gi\|225451241\|ref\|XP_002276406.1\|	8.1e-63	64.4	PREDICTED: uncharacterized pro...	[more]
gi\|802757898\|ref\|XP_012089210.1\|	2.3e-62	66.8	PREDICTED: uncharacterized pro...	[more]
gi\|657992790\|ref\|XP_008388654.1\|	6.8e-62	66.5	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo23526.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QSB2_SPIOL	6.5e-112	99.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8CN52_BETVU	4.9e-75	71.7	Uncharacterized protein OS=Bet...	[more]
F6HTU5_VITVI	5.6e-63	64.4	Putative uncharacterized prote...	[more]
A0A067JUG3_JATCU	1.6e-62	66.8	Uncharacterized protein OS=Jat...	[more]
W9R6S1_9ROSA	1.4e-61	63.8	Uncharacterized protein OS=Mor...	[more]

BLAST of Spo23526.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RUBR_METTH	1.2e-10	58.7	Probable rubredoxin OS=Methano...	[more]
HRB_MOOTA	6.1e-10	54.3	High molecular weight rubredox...	[more]
RUBR4_RHOSQ	7.9e-10	49.0	Rubredoxin 4 OS=Rhodococcus sp...	[more]
RUBR4_RHOER	7.9e-10	49.0	Rubredoxin 4 OS=Rhodococcus er...	[more]
RUBR_DESGI	1.0e-9	55.3	Rubredoxin OS=Desulfovibrio gi...	[more]

BLAST of Spo23526.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT1G54500.1	5.8e-51	53.6	Rubredoxin-like superfamily pr...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004039	Rubredoxin-type fold	GENE3D	2.20.28.10		coord: 106..159 score: 2.7
IPR018527	Rubredoxin, iron-binding site	PROSITE	PS00202	RUBREDOXIN	coord: 139..149 scor
IPR024934	Rubredoxin-like domain	PROFILE	PS50903	RUBREDOXIN_LIKE	coord: 107..158 score: 13
IPR024935	Rubredoxin domain	PRINTS	PR00163	RUBREDOXIN	coord: 109..125 score: 4.5E-9coord: 139..155 score: 4.
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 110..155 score: 1.7
None	No IPR available	PANTHER	PTHR10909	ELECTRON TRANSPORT OXIDOREDUCTASE	coord: 93..178 score: 3.9
None	No IPR available	unknown	SSF57802	Rubredoxin-like	coord: 106..172 score: 7.57

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006412	translation
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0042793	plastid transcription
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009987	cellular process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015031	protein transport
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010239	chloroplast mRNA processing
biological_process	GO:0032502	developmental process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0006397	mRNA processing
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0042742	defense response to bacterium
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0009509	chromoplast
cellular_component	GO:0009513	etioplast
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009537	proplastid
cellular_component	GO:0009501	amyloplast
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0047134	protein-disulfide reductase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005506	iron ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo09777	0.76	Barchart \| Table
Spo00214	0.74	Barchart \| Table
Spo18184	0.74	Barchart \| Table
Spo08824	0.71	Barchart \| Table
Spo12228	0.70	Barchart \| Table
Spo24016	0.70	Barchart \| Table
Spo11246	0.69	Barchart \| Table
Spo04709	0.69	Barchart \| Table
Spo30004	0.69	Barchart \| Table
Spo10106	0.68	Barchart \| Table
Spo07548	0.68	Barchart \| Table
Spo00872	0.67	Barchart \| Table
Spo01255	0.67	Barchart \| Table
Spo00539	0.66	Barchart \| Table
Spo06775	0.66	Barchart \| Table
Spo26673	0.66	Barchart \| Table
Spo26975	0.66	Barchart \| Table
Spo03785	0.65	Barchart \| Table
Spo11688	0.65	Barchart \| Table