Spo23489 (gene) | SpinachBase

Overview


Name	Spo23489
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 25747560 .. 25751001 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATGCTTCCTGATATTGAGAAGATTCACACGGTAAAATTGTTTGTTCTTTACTAACTCTTAATTTGACTGAGTAAAGCAAGTTTCTATTATTAAGAAGATTTACCTATAAATGTAGCTTTGTTAGAGTCATAGCTTGTAAAATGATGGCGTATCTCCAAATTTATTCTTAATAATTGATTAGATTATTGGAAGGTATATTATATGAACACCTTTAGTAAACCATGTCACCACTACTACTACTTTACACACTACTCGCTTGTCATCGTGTGAATTTAGCTATGTAGATTTGTTTTGGGAAGAATAACTCCACATTAACCAGGAGTATCAGTTGAACTTACTTAAAGCTATTTGAGATTTGTACATGGCTACTGAAGAACCATGTTAGAGTGTTCATTATTCAGACATGTTTGACCTTAATGTTTACCAAACTGTCAGAATCCTTGATAATTGTTCTTCCAAAATTTTCTTCGGGTCTTTGCATTGGGTTGGTCCTTCAGTTACTAAATATTTTCATTTTTAATTCATATCATCCAATTGTAATCATTTAAATGGAATGATCCAATCAAAACAACAGACGACAACTTACTGAATTTAAAGAACAAAGCTTCACTTAACTCATAACACCTATCGCCCAAGGAATCAAGAAAACCAAGCAAAATTCAGTCAGAATAAGAGAAGAAAACTTACAGAATACAGTCAATATTTCCTTCTTAAGAGGACAGTAAGCCAACTATACAAGAAAGTTTCAGCAATAATACAAGCTAAATTATAACCGTTGAACTTTAATCATACATGATACTCAAAGTTCAACTCAAAATTTGCCTTCTTACTTAAAGGAAGCATTCTCCATTTTATGATCTTGATGTATCTCCTGAGTTAAATGAGATGTACTTTTATGTTATTCCATTTTGGGGTTTGCATGAAGAATAGGCATGCTTCAGTTTGAGATGGTTATGTTCATGTGCTTGTTTGAGTACTAATTAAGATTTTGTCTTTATAGTGCCAAAATTCATTAAATGTTGCTATAATTTTAGTTACCTGACTTAATGGGTGCGCGTTTTGGGTGACAGTTTTTTTTATCTCTCTGGTTTCGATGAATGGTTTGGCTTTGGGTTTAACAAAAGAACGAAAGGAAATGAAACCCATGAAGCTGAGATAGAGGTCTAAGGCGAGCGCTTGATCCCTCTTTGTGCAAGGTATCTTAAACTTCTCATGATATTGTCATTCATACTTCAATTCAGATTGCTGATATGCTATGTCAAAACTTGATATATGTTTGTTTAATTGTGGTGTAGTCAGATGCATAACTCAGTTAGAAAAAAAAAACATGATTAATTTCCAGGAGATAAAAAGGATTCAGGTCTCTAGGATAGGAAGTAGTTATATGTTCTTAGTTTCTTATATTGCCATTATTTTCGGTTTACTTGCTTAAAGATGAAATACATGATTTATCTTTGACTTTGTAATTAAGCACCACTGAATTTGAAGTAAATGAAATATTCAACCTTTCCATCTTTTTGTTGAGACATTGTATTTTATTTCTTGTAAATTTTGATGCAGGACAGTCTTATCTTTAGCCTGCCAGACCTTCAACAATGGTTTCGAATCTGTCGTACCATGAAACTCGATTAAACCCATGTGTTGCGGCGTTGCGCTACCGTCATTAGATGATGATCTTGATCTGGGTGTTATTAAGAAATTCCTTCGATCCAGAGTTGTTTTAAGAGATTAATGATATATATGGAGGGAAGTTGATCTCATCTCAAAAATCAAAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTCATAGTGTCTGTGCTATGCCTATGGAGTAAATTGAAGGTAACACTCTGTCTAGATATATTTGAAAATTCATGTAGTACTATCAAACCTCGATGGTCCTTGAGTAGTTCCCTTCCTATTTTTAGAACCCTAACAAGCATAAGAAAATTAGTTGGTCTTTGAGTAGTTGAGCCAAGCGAGTTTTCTTGTGGCTTGTTAAGCTTTATGTTTCCTTGTGTGGAGAGTTTCATATGGAAAATCAACAAAATTTCCCTATATCTGGTTGTTTCGAAGCTGAGATTTGGAGCTAAAAGATTTATCATTGAATCAATATGATTAATCTCACATTGATGAATCGTGACCTTCCGTGAAGATCTGACAATATAGAACTGAGTAAAACTCTGCTATGGACCCTATATTTGTGTTTCAGATTCTATTGGAGGCTGCATCGATTATAAGCATTTTAGACAATCTATGTGTTGTCTTTCAATAGACAATTATTTATTAGGTATGTGCAGATTATGTAGGAGATACTTCATTAACTCTTAAACTTGTACTTCTGAGTACTGGTGAGTAATAATGTAGAAAATATAGTGCTTCTGTTACCGTGACTATCTTTCTGCTACCCTAAAACTTCATAAAATGACCTTTCTGCTATCGTAGTTAACTGATTCATGTTCATCTTTGTGCATCTTTCGTTAGGTAATTGCTGAAATGACCATGGAGGTGTGGACAGAAATGTTGAATGCACTGGAAATAGTTAATTCATCACATCCACTTTTGAATGTGTTCATGACGTATGTTCTCGGTAACTTCATAACAACATTAGAATATAGTCCCCTGCCTCTATACCTTATAGTATAAAGTTTCGGACTATAGATCGAATATATTGATTTAATGTTGTATGGATTTGATCTGACTTCAGGGTTGAGGTGTTGTTCTTGTTGTTGTCCGGTTGTCCCCAACAAAAGACTCATCAAACTTTTCAGAAACTATAAGCCTCACACTGAAGAAGTACATGAACAAGGTAAGAATGCCAATCTTGCTCCCTTTCAGAAACAACTTTTCAATTACTAATATATGAGGTCATAAGAAAACTTATGACATGATGCAGAAATTCATTACACTTAAGTCTCTTTCGAGGATATCAACAAGGCTTTTGACCTCATGTTGAAGGGTGAAAGCATCAAAGTATTAGGTGCATTATCTACATGGATGCTTGAAGTGGGAAATGGTGCCCTACCTATGAGTGAAATATCTATTAAAGTAGTCTGTTCTCTTTCATCTTACCTTAGATGTATATCTATGAGTTCTCTCCATAGTACGAGCGTCTAAATTCCGTATATCACAATCGAGGACGCGACAATATAATTACAGGCTTTTGTTATTCTTTATTAGTTCTCTAATTATCAGTTGTAAAATTTATGGCTTTTCTGAAGGATGATTTCATTAATATTTTATCTAAGAAGATTTTACAATAACAATTGTCGAGAGTTTAATGTTGCACGTGGATGCTAAGATTTCTATGAGACTTATATTGTAAACGTATTTATGATTCATTTTATTAATTACATGCGTATCGACTTTGACATTGTTTTTCTA

mRNA sequence

ATGATATGCTTCCTGATATTGAGAAGATTCACACGTTTTTTTTATCTCTCTGGTTTCGATGAATGGTTTGGCTTTGGGTTTAACAAAAGAACGAAAGGAAATGAAACCCATGAAGCTGAGATAGAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTCATAGTGTCTGTGCTATGCCTATGGAGTAAATTGAAGGTAATTGCTGAAATGACCATGGAGGTGTGGACAGAAATGTTGAATGCACTGGAAATAGTTAATTCATCACATCCACTTTTGAATGTGTTCATGACGGTTGAGGTGTTGTTCTTGTTGTTGTCCGGTTGTCCCCAACAAAAGACTCATCAAACTTTTCAGAAACTATAAGCCTCACACTGAAGAAGTACATGAACAAGGTAAGAATGCCAATCTTGCTCCCTTTCAGAAACAACTTTTCAATTACTAATATATGAGGTCATAAGAAAACTTATGACATGATGCAGAAATTCATTACACTTAAGTCTCTTTCGAGGATATCAACAAGGCTTTTGACCTCATGTTGAAGGGTGAAAGCATCAAAGTATTAGGTGCATTATCTACATGGATGCTTGAAGTGGGAAATGGTGCCCTACCTATGAGTGAAATATCTATTAAAGTAGTCTGTTCTCTTTCATCTTACCTTAGATGTATATCTATGAGTTCTCTCCATAGTACGAGCGTCTAAATTCCGTATATCACAATCGAGGACGCGACAATATAATTACAGGCTTTTGTTATTCTTTATTAGTTCTCTAATTATCAGTTGTAAAATTTATGGCTTTTCTGAAGGATGATTTCATTAATATTTTATCTAAGAAGATTTTACAATAACAATTGTCGAGAGTTTAATGTTGCACGTGGATGCTAAGATTTCTATGAGACTTATATTGTAAACGTATTTATGATTCATTTTATTAATTACATGCGTATCGACTTTGACATTGTTTTTCTA

Coding sequence (CDS)

ATGATATGCTTCCTGATATTGAGAAGATTCACACGTTTTTTTTATCTCTCTGGTTTCGATGAATGGTTTGGCTTTGGGTTTAACAAAAGAACGAAAGGAAATGAAACCCATGAAGCTGAGATAGAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTCATAGTGTCTGTGCTATGCCTATGGAGTAAATTGAAGGTAATTGCTGAAATGACCATGGAGGTGTGGACAGAAATGTTGAATGCACTGGAAATAGTTAATTCATCACATCCACTTTTGAATGTGTTCATGACGGTTGAGGTGTTGTTCTTGTTGTTGTCCGGTTGTCCCCAACAAAAGACTCATCAAACTTTTCAGAAACTATAA

Protein sequence

MICFLILRRFTRFFYLSGFDEWFGFGFNKRTKGNETHEAEIEQSWLFPWKKKRSKVGFFPGKKKEAKLAFIVSVLCLWSKLKVIAEMTMEVWTEMLNALEIVNSSHPLLNVFMTVEVLFLLLSGCPQQKTHQTFQKL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo23489.1	Spo23489.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo23489.1 vs. NCBI nr
BLAST of Spo23489.1 vs. UniProtKB/TrEMBL
BLAST of Spo23489.1 vs. ExPASy Swiss-Prot
BLAST of Spo23489.1 vs. TAIR (Arabidopsis)

BLAST of Spo23489.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo23489.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo23489.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo23489.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016102	diterpenoid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016707	gibberellin 3-beta-dioxygenase activity
molecular_function	GO:0005506	iron ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo02572	0.68	Barchart \| Table
Spo01660	0.67	Barchart \| Table