Spo23505 (gene) | SpinachBase

Overview


Name	Spo23505
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Photosystem II reaction center Psb28 protein
Location	chr6 : 25859907 .. 25862548 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGAGGTTGGCATGAGTGGTTAAGGGCCTCTTGCTCCTTAACCAAGGTCTCGGGTTCGAGCCTTGGGAATGGAAAAAATCTCAACTGGGAGGGATGCTGCCCATCGAGGTACCCATGCAAACTCCCACGGGAGATTACCTCGCCGAAGGCGGTGGGAACTCCTCGTAGTAGAACCAAAAAAAAAAAAAAGCAAATATCCATTTTCTAAATTACCAATGTGAGAGTAGTAAAATAGTTTGTGGAAGTGAAAAAATTGGGAATTGGAGATTTGCTCTTTACAGTTTGCTGCAGGATACCCCTTTGGCTCAAGTGAATGGCTGATATTGTAACACACCAACGTCTGGATTCCAGATGACCCATATCAATATCATCTTCATCATCTCTCCTCAAAAAAATCCACTGAATTTATTAAAATAAAAAATAAACATTTTCTGGGTATTCCATTATCAAACTCCATGGCAGCATCTCTGCAATCTCTTACTTGTTCTTCTCCACTCTCTCAATGCTCCTCTCACAAATCTTCCTCTAAACCAGGTATCTCCCTTTCCCTCTCCTCTAAATTTGCAGAAAAGTAAGCATTATTGATTATGCATTCCTGCATTGCAGTAATTTTCGAATTTGAATTCCTTAATTTCTAACTGTTAGTGTTGGGAAATTTGGGAAATTTGGGAATTTTCTCAGTTTTCGAAGGGTTTGGTTCAATCTTTGTTAATTTAATTGAATTTAACAAAAAAAAAAAAGTTTATCCCAAGAAGCTGTGTAATTGGCATTGGTATATGAGGGTTTAGCAAAGTGATTAAAGTTTCCCTTTCTTATAGTTTCATTAAATGGTTACTAAATTTGCTTTAAACTCTGTTTTTGTCCACCTAGAACAACTTATGTTATGTGAATTTTGTCAATAAACATAGGGAATAGGTTTTAGCTTGAATATTTTAGCTTCAAATTTATGTGAATTTCATCAATAAACAACTTATGTTATGGGAATCTTGTCAATGAAGGGCTAATATTGAGGAAAATTGAGCAATTCAGCTTTGCAATTTCAGGTTGTTTGTGAGTGAGTGAGTGATAGAGAATAGAATTATCTTAGGATATAAAGTGTACAAATCTAGTCACATTAGTTTTCCTAATATAATTAGGATTATTGTAACACTATAAATATGATCAATGGAATACATTCCAGTTCACAGAGTTTTCACGAATCTAACAGTGAGGTTGTTCTTCGTTTTGAGCTTTTTGGATACAACTGGTGAATTGTATACACCATGATTAGTCAACCTAAAAACTTGTACTTGCAATAGGGGGACTTAAATATGATTATACAAGGATACACCTGATGTATACAAGACTTACTATTTTGTATTTTGTTTAGGCGAGTGGGTGGTTTGGGGTAGGAGTTTTAAAATTCTTGATTCTAGAGTCATTTTACTGACAAGGCATCTGTTATTTAAGTGTAAAATTTAAGGTTTTAGTTCCTGCTTATTGTTCTTGGACTCAAGGTTTAGAAATTTAGGAATGTTTGGGAAATGAAGCAATTTTGGCAATCTTTCTTGGCCGTCTGGTGTCTGAGTAATGCATTGGAGCATCAGATATTAAGCTAGTATTGTTTGTAGATAGTATGACGAATCTGATGTAGTCTTTATCTGGTTTATCAGGCATTTGTGTTTTCTCTTGGGCTACTCCCAAGCGTGTACACTCTTCATTCAATGGACTTCAGCTAAGGTTACGTCCATTGAGATGGGCATCACAAAGGTCATTTTCTGCACCTGTTGGTCAGATTGTGATGATGGTTCAACCCAAAATTCAGTTCGTTCAAGGGACCGATGAACTTACAATACCAGATGTGAACTTAACCAAATCAAAGGATGGGACTAATGGTGCTGCTATATTCAGATTTGATCAGCCCTCTGTCTTTGACTCATCCAAGGAGGTCGGTGATATAACTGGTTTCTACATGATTGATGAGGAAGGTGTTCTTTCTTCCAACAGTGTGAATGCAAGGTTTATCAATGGGAAACCAGCAGGCATTGAAGCAAAGTACATCATGCGCACCCCGAAAGACTGGGACAGGTTCATGAGATTCATGGAACGCTACGCCAACGCAAACGGTTTGCAATTCGTCAAAAGTTGAGGCAATATTGTACATCCTTCTTTTTTTCTTCTGTAAACCCGATTTTAGTATGTTTATGTGAGTTGAGTATATAGCTCAAAAGCTTGAATCTTTTCATGAAGATTAATGCTGCTTTCTTGTGCACCAATTGATTGATTATATGTGTTCTCTGACCTATTTTTTATTTTTATTTTTGAATAGTTTGGGTCTGATAATGCTGGGTGAGTGACTATATCATTCAATGTAAGACATAAATTTCAAATAATAGATATTTGAATCAGCATTCATTAATATGGTATCAGCATCAAGTACCAACATAAATGAAGTAATCTTGTACTCTAAAGAAATTCTCTATCAGTAATTTAGGGACCAAAGCTCAAATAACATAAAGAACATGTTACAAATCCTTCTGAATCAGTAGCAGGTCAGAGGAATGTATTCCTTTCCCTAGCAACTATGAAACGTTCTTCAATATGATTGCTTGCTTACCCAAGACACTGTAATTGGGCTTCTAACCCTGTATAGGTTTCGAC

mRNA sequence

AATTGAGGTTGGCATGAGTGGTTAAGGGCCTCTTGCTCCTTAACCAAGGTCTCGGGTTCGAGCCTTGGGAATGGAAAAAATCTCAACTGGGAGGGATGCTGCCCATCGAGGTACCCATGCAAACTCCCACGGGAGATTACCTCGCCGAAGGCGGTGGGAACTCCTCGTAGTAGAACCAAAAAAAAAAAAAAGCAAATATCCATTTTCTAAATTACCAATGTGAGAGTAGTAAAATAGTTTGTGGAAGTGAAAAAATTGGGAATTGGAGATTTGCTCTTTACAGTTTGCTGCAGGATACCCCTTTGGCTCAAGTGAATGGCTGATATTGTAACACACCAACGTCTGGATTCCAGATGACCCATATCAATATCATCTTCATCATCTCTCCTCAAAAAAATCCACTGAATTTATTAAAATAAAAAATAAACATTTTCTGGGTATTCCATTATCAAACTCCATGGCAGCATCTCTGCAATCTCTTACTTGTTCTTCTCCACTCTCTCAATGCTCCTCTCACAAATCTTCCTCTAAACCAGGCATTTGTGTTTTCTCTTGGGCTACTCCCAAGCGTGTACACTCTTCATTCAATGGACTTCAGCTAAGGTTACGTCCATTGAGATGGGCATCACAAAGGTCATTTTCTGCACCTGTTGGTCAGATTGTGATGATGGTTCAACCCAAAATTCAGTTCGTTCAAGGGACCGATGAACTTACAATACCAGATGTGAACTTAACCAAATCAAAGGATGGGACTAATGGTGCTGCTATATTCAGATTTGATCAGCCCTCTGTCTTTGACTCATCCAAGGAGGTCGGTGATATAACTGGTTTCTACATGATTGATGAGGAAGGTGTTCTTTCTTCCAACAGTGTGAATGCAAGGTTTATCAATGGGAAACCAGCAGGCATTGAAGCAAAGTACATCATGCGCACCCCGAAAGACTGGGACAGGTTCATGAGATTCATGGAACGCTACGCCAACGCAAACGGTTTGCAATTCGTCAAAAGTTGAGGCAATATTGTACATCCTTCTTTTTTTCTTCTGTAAACCCGATTTTAGTATGTTTATGTGAGTTGAGTATATAGCTCAAAAGCTTGAATCTTTTCATGAAGATTAATGCTGCTTTCTTGTGCACCAATTGATTGATTATATGTGTTCTCTGACCTATTTTTTATTTTTATTTTTGAATAGTTTGGGTCTGATAATGCTGGGTGAGTGACTATATCATTCAATGTAAGACATAAATTTCAAATAATAGATATTTGAATCAGCATTCATTAATATGGTATCAGCATCAAGTACCAACATAAATGAAGTAATCTTGTACTCTAAAGAAATTCTCTATCAGTAATTTAGGGACCAAAGCTCAAATAACATAAAGAACATGTTACAAATCCTTCTGAATCAGTAGCAGGTCAGAGGAATGTATTCCTTTCCCTAGCAACTATGAAACGTTCTTCAATATGATTGCTTGCTTACCCAAGACACTGTAATTGGGCTTCTAACCCTGTATAGGTTTCGAC

Coding sequence (CDS)

ATGGCAGCATCTCTGCAATCTCTTACTTGTTCTTCTCCACTCTCTCAATGCTCCTCTCACAAATCTTCCTCTAAACCAGGCATTTGTGTTTTCTCTTGGGCTACTCCCAAGCGTGTACACTCTTCATTCAATGGACTTCAGCTAAGGTTACGTCCATTGAGATGGGCATCACAAAGGTCATTTTCTGCACCTGTTGGTCAGATTGTGATGATGGTTCAACCCAAAATTCAGTTCGTTCAAGGGACCGATGAACTTACAATACCAGATGTGAACTTAACCAAATCAAAGGATGGGACTAATGGTGCTGCTATATTCAGATTTGATCAGCCCTCTGTCTTTGACTCATCCAAGGAGGTCGGTGATATAACTGGTTTCTACATGATTGATGAGGAAGGTGTTCTTTCTTCCAACAGTGTGAATGCAAGGTTTATCAATGGGAAACCAGCAGGCATTGAAGCAAAGTACATCATGCGCACCCCGAAAGACTGGGACAGGTTCATGAGATTCATGGAACGCTACGCCAACGCAAACGGTTTGCAATTCGTCAAAAGTTGA

Protein sequence

MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVKS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo23505.1	Spo23505.1	mRNA

Homology

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BLAST of Spo23505.1 vs. NCBI nr
Match: gi|902237451|gb|KNA24800.1| (hypothetical protein SOVF_012060 [Spinacia oleracea])

HSP 1 Score: 370.5 bits (950), Expect = 1.600e-99
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


		  
Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60
           MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS
Sbjct: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60

Query: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120
           FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG
Sbjct: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120

Query: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180
           DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ
Sbjct: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180

Query: 181 FVKS 185
           FVKS
Sbjct: 181 FVKS 184

[Close]

BLAST of Spo23505.1 vs. NCBI nr
Match: gi|731347208|ref|XP_010684868.1| (PREDICTED: photosystem II reaction center Psb28 protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 323.2 bits (827), Expect = 3.000e-85
Identity = 158/184 (85.87%), Postives = 169/184 (91.85%), Query Frame = 1


		  
Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60
           MAA+LQSLTCS P S CSSHK SS  GIC+ S A P+RVHSSFNGLQLRLRPLRW SQRS
Sbjct: 1   MAAALQSLTCSYPPSHCSSHKYSSYSGICLLSSANPQRVHSSFNGLQLRLRPLRWVSQRS 60

Query: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120
            SAP+G+IVMMVQPKIQF+QGTDELTIPDV LTKSKDGTNG A+F+FDQPSVFDSSKEVG
Sbjct: 61  LSAPIGRIVMMVQPKIQFIQGTDELTIPDVKLTKSKDGTNGMALFKFDQPSVFDSSKEVG 120

Query: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180
           DITGFYMIDEEGVL + SVNARFINGKPAG+EAKYIMRTP+DWDRFMRFMERYANANGLQ
Sbjct: 121 DITGFYMIDEEGVLQTTSVNARFINGKPAGVEAKYIMRTPRDWDRFMRFMERYANANGLQ 180

Query: 181 FVKS 185
           FVKS
Sbjct: 181 FVKS 184

[Close]

BLAST of Spo23505.1 vs. NCBI nr
Match: gi|694413976|ref|XP_009335229.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 237.7 bits (605), Expect = 1.700e-59
Identity = 121/182 (66.48%), Postives = 137/182 (75.27%), Query Frame = 1


		  
Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFS 62
           A+LQSL  SSPLSQC          +C   W   +   S+FNG  LR+   +WA  R  +
Sbjct: 2   ATLQSLAFSSPLSQCLQQPRLHSGLLC---WGVHRSAESTFNGKSLRVSRPQWAPLRRCT 61

Query: 63  APVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDI 122
                I MMV+PKIQF+QGTDE TIPDV LTKSKDGTNG AIF+F+QPSVFDSS E GDI
Sbjct: 62  QASRSIKMMVKPKIQFIQGTDEQTIPDVRLTKSKDGTNGVAIFKFEQPSVFDSSGEFGDI 121

Query: 123 TGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFV 182
           TGFYMIDEEGVLSS  VNA+F+NGKPAGIEAKYIMRTP+DWDRFMRFMERYAN NGL F+
Sbjct: 122 TGFYMIDEEGVLSSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANDNGLSFI 180

Query: 183 KS 185
           K+
Sbjct: 182 KN 180

[Close]

BLAST of Spo23505.1 vs. NCBI nr
Match: gi|694314287|ref|XP_009370523.1| (PREDICTED: photosystem II reaction center Psb28 protein-like [Pyrus x bretschneideri])

HSP 1 Score: 237.3 bits (604), Expect = 2.200e-59
Identity = 121/182 (66.48%), Postives = 137/182 (75.27%), Query Frame = 1


		  
Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFS 62
           A+LQSL  SSP+SQC          +C   W   +   S+FNG  LR+   +WA  R  +
Sbjct: 2   ATLQSLAFSSPVSQCLQQPRLHSGLLC---WGVHRIAESTFNGQSLRVSRPQWAPLRRCT 61

Query: 63  APVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDI 122
                I MMV+PKIQF+QGTDE TIPDV LTKSKDGTNG AIFRF+QPSVFDSS E GDI
Sbjct: 62  QVSRSITMMVKPKIQFIQGTDEQTIPDVRLTKSKDGTNGVAIFRFEQPSVFDSSGEFGDI 121

Query: 123 TGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFV 182
           TGFYMIDEEGVLSS  VNA+F+NGKPAGIEAKYIMRTP+DWDRFMRFMERYAN NGL F+
Sbjct: 122 TGFYMIDEEGVLSSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANDNGLSFI 180

Query: 183 KS 185
           K+
Sbjct: 182 KT 180

[Close]

BLAST of Spo23505.1 vs. NCBI nr
Match: gi|657981392|ref|XP_008382711.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic-like [Malus domestica])

HSP 1 Score: 235.7 bits (600), Expect = 6.300e-59
Identity = 120/181 (66.30%), Postives = 135/181 (74.59%), Query Frame = 1


		  
Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFS 62
           A+LQSL  SSPLSQC          +C   W   +   S+FNG  LR+   +WA  R  +
Sbjct: 2   ATLQSLAFSSPLSQCLQQPRLHSGLLC---WGVXRSAESTFNGKSLRVSRPQWAPLRRCT 61

Query: 63  APVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDI 122
                I MMV+PKIQF+QGTDE TIPDV LTKSKDGTNG A F+F+QPSVFDSS E GDI
Sbjct: 62  QASRSIKMMVKPKIQFIQGTDEQTIPDVRLTKSKDGTNGVAXFKFEQPSVFDSSGEFGDI 121

Query: 123 TGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFV 182
           TGFYMIDEEGVLSS  VNA+F+NGKPAGIEAKYIMRTP+DWDRFMRFMERYAN NGL F+
Sbjct: 122 TGFYMIDEEGVLSSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANDNGLSFI 179

Query: 183 K 184
           K
Sbjct: 182 K 179

[Close]

BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZ56_SPIOL (Photosystem II reaction center Psb28 protein OS=Spinacia oleracea GN=SOVF_012060 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.100e-99
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


		  
Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60
           MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS
Sbjct: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60

Query: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120
           FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG
Sbjct: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120

Query: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180
           DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ
Sbjct: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180

Query: 181 FVKS 185
           FVKS
Sbjct: 181 FVKS 184

[Close]

BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ERL5_BETVU (Photosystem II reaction center Psb28 protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g166610 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.100e-85
Identity = 158/184 (85.87%), Postives = 169/184 (91.85%), Query Frame = 1


		  
Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60
           MAA+LQSLTCS P S CSSHK SS  GIC+ S A P+RVHSSFNGLQLRLRPLRW SQRS
Sbjct: 1   MAAALQSLTCSYPPSHCSSHKYSSYSGICLLSSANPQRVHSSFNGLQLRLRPLRWVSQRS 60

Query: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120
            SAP+G+IVMMVQPKIQF+QGTDELTIPDV LTKSKDGTNG A+F+FDQPSVFDSSKEVG
Sbjct: 61  LSAPIGRIVMMVQPKIQFIQGTDELTIPDVKLTKSKDGTNGMALFKFDQPSVFDSSKEVG 120

Query: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180
           DITGFYMIDEEGVL + SVNARFINGKPAG+EAKYIMRTP+DWDRFMRFMERYANANGLQ
Sbjct: 121 DITGFYMIDEEGVLQTTSVNARFINGKPAGVEAKYIMRTPRDWDRFMRFMERYANANGLQ 180

Query: 181 FVKS 185
           FVKS
Sbjct: 181 FVKS 184

[Close]

BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: D7U379_VITVI (Photosystem II reaction center Psb28 protein OS=Vitis vinifera GN=VIT_07s0005g04400 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.800e-59
Identity = 119/181 (65.75%), Postives = 142/181 (78.45%), Query Frame = 1


		  
Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFS 62
           A+LQSL  +SPLS C   K S   G+   SWA  +  HSSFNG  L L   +WA+ +  S
Sbjct: 2   AALQSLAFTSPLSHCC--KQSPLSGLS--SWAVHRSAHSSFNGRSLHLPRPQWAALKRSS 61

Query: 63  APVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDI 122
           +  G I MMV+P IQF+QGTDE T+PDV LT+S+DGTNG AIF+F+QPSVFDSS EVGDI
Sbjct: 62  STSGLITMMVKPTIQFIQGTDEQTVPDVRLTQSRDGTNGMAIFKFEQPSVFDSSGEVGDI 121

Query: 123 TGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFV 182
           TGFYMIDEEGVL S  V+A+FINGKP+GIEAKY+MR+P++WDRFMRFMERY+N NGLQFV
Sbjct: 122 TGFYMIDEEGVLQSVDVSAKFINGKPSGIEAKYVMRSPREWDRFMRFMERYSNENGLQFV 178

Query: 183 K 184
           K
Sbjct: 182 K 178

[Close]

BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.200e-58
Identity = 122/186 (65.59%), Postives = 141/186 (75.81%), Query Frame = 1


		  
Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQL-----RLRPLRWAS 62
           A+LQSL  +SP+S    ++  S  G+   SW   +  +S FNG  L     R+ P RW S
Sbjct: 2   ATLQSLALASPVSHSFLNQPRSLSGMP--SWVAHRSANSQFNGQSLQVAQSRISPTRWNS 61

Query: 63  QRSFSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSK 122
           +R        IVMMV+PKIQF+QGTDE TIPDV LTKS+DGTNG AIFRFDQPSVFDSS 
Sbjct: 62  KRC-----SPIVMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 121

Query: 123 EVGDITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANAN 182
           EVGDITGFYMIDEEGVL S  VNA+F+NGKPAGIEAKYIMRTP++WDRFMRFMERY+N N
Sbjct: 122 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 183 GLQFVK 184
           GLQF+K
Sbjct: 182 GLQFIK 180

[Close]

BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QS78_GOSRA (Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G182100 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.700e-58
Identity = 122/186 (65.59%), Postives = 140/186 (75.27%), Query Frame = 1


		  
Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQL-----RLRPLRWAS 62
           A+LQSL  +SP+S    ++  S  GI   SW   +  +S FNG  L     R+ P RW S
Sbjct: 2   ATLQSLALASPVSHSFLNQPRSLSGIP--SWVAHRSANSQFNGQSLQVAQSRISPTRWNS 61

Query: 63  QRSFSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSK 122
           +R        IVMMV+PKIQF+QGTDE T PDV LTKS+DGTNG AIFRFDQPSVFDSS 
Sbjct: 62  KRC-----SPIVMMVKPKIQFIQGTDEQTTPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 121

Query: 123 EVGDITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANAN 182
           EVGDITGFYMIDEEGVL S  VNA+F+NGKPAGIEAKYIMRTP++WDRFMRFMERY+N N
Sbjct: 122 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 183 GLQFVK 184
           GLQF+K
Sbjct: 182 GLQFIK 180

[Close]

BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 209.5 bits (532), Expect = 3.000e-53
Identity = 113/186 (60.75%), Postives = 139/186 (74.73%), Query Frame = 1


		  
Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVF--SWATPKRVHSSFNGLQLRLRPLRWASQ 60
           MAA +++L  +SP+S      + ++P  C    S    + +HSSF G+ L+ R  + AS 
Sbjct: 1   MAAVMKALAVASPIS------ARAQPRRCPAGSSGGPSQSLHSSFGGVSLQCRRTKPASL 60

Query: 61  RSFSAPVGQIVMMV-QPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSK 120
              S P  Q+VMM  +P IQF+QGTDE TIPDV LTKS+DGTNG AIF FDQPSVFDSS 
Sbjct: 61  HR-SRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSA 120

Query: 121 EVGDITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANAN 180
           E+GDITGFYMID+EGVL S  V+A+F+NGKPA IEAKY+MRTP++WDRFMRFMERY+ AN
Sbjct: 121 ELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQAN 179

Query: 181 GLQFVK 184
           GLQFVK
Sbjct: 181 GLQFVK 179

[Close]

BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.700e-49
Identity = 100/167 (59.88%), Postives = 124/167 (74.25%), Query Frame = 1


		  
Query: 19  SHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFSAPVG--QIVMMVQPKI 78
           S ++  + GI + S +      SSF G  + L P    S R+   P+    I MMV+P +
Sbjct: 16  SQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSL-PRAQPSSRTALRPMKPVSITMMVKPAL 75

Query: 79  QFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDITGFYMIDEEGVLSS 138
           QF+QGTDE+TIPDV LT+S+DG+NG A+F FDQPSVFDSS EVG+ITG YMIDEEGV+ S
Sbjct: 76  QFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQS 135

Query: 139 NSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVK 184
             VNARF+NGKP GI AK+IMR+PK+WDRFMRFMERY++ NGLQFVK
Sbjct: 136 TDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVK 181

[Close]

BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.100e-34
Identity = 65/114 (57.02%), Postives = 87/114 (76.32%), Query Frame = 1


		  
Query: 72  VQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFD-SSKEVGDITGFYMIDE 131
           ++ KIQF++G DE  +PDV LT+SKDG+ G A FRF  P++ D ++ + G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 132 EGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVKS 185
           EG+L +  VNARF+NGKP  IE+ YIM++P+ WDRFMRFMERY   NGL F K+
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSKA 114

[Close]

BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.100e-33
Identity = 64/114 (56.14%), Postives = 87/114 (76.32%), Query Frame = 1


		  
Query: 72  VQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFD-SSKEVGDITGFYMIDE 131
           ++ KIQF++G DE  +PDV LT+S+DG+ G A FRF  P++ D S+ + G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 132 EGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVKS 185
           EG L +  VNA+FINGKP  IE+ YIM++P+ WDRFMRFMERY  +NGL F K+
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTKA 114

[Close]

BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.100e-33
Identity = 67/110 (60.91%), Postives = 83/110 (75.45%), Query Frame = 1


		  
Query: 76  IQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEV-GDITGFYMIDEEGVL 135
           IQF+QG +E  IPDV LT+S+DG+ G A FRF  P V ++   V G+ITG Y+IDEEG L
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 136 SSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVKS 185
            +  VNARF+NGKP GIEA YIM++ +DWDRFMRFMERY+  NGL F K+
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTKA 113

[Close]

BLAST of Spo23505.1 vs. TAIR (Arabidopsis)
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein)

HSP 1 Score: 195.7 bits (496), Expect = 2.600e-50
Identity = 99/159 (62.26%), Postives = 120/159 (75.47%), Query Frame = 1


		  
Query: 27  GICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFSAPVG--QIVMMVQPKIQFVQGTDE 86
           GI + S +      SSF G  + L P    S R+   P+    I MMV+P +QF+QGTDE
Sbjct: 39  GIVLSSCSVLPIKSSSFTGSPVSL-PRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDE 98

Query: 87  LTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDITGFYMIDEEGVLSSNSVNARFI 146
           +TIPDV LT+S+DG+NG A+F FDQPSVFDSS EVG+ITG YMIDEEGV+ S  VNARF+
Sbjct: 99  MTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFV 158

Query: 147 NGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVK 184
           NGKP GI AK+IMR+PK+WDRFMRFMERY++ NGLQFVK
Sbjct: 159 NGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVK 196

The following BLAST results are available for this feature:

BLAST of Spo23505.1 vs. NCBI nr
BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
BLAST of Spo23505.1 vs. TAIR (Arabidopsis)

BLAST of Spo23505.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902237451\|gb\|KNA24800.1\|	1.6e-99	100.	hypothetical protein SOVF_0120...	[more]
gi\|731347208\|ref\|XP_010684868.1\|	3.0e-85	85.8	PREDICTED: photosystem II reac...	[more]
gi\|694413976\|ref\|XP_009335229.1\|	1.7e-59	66.4	PREDICTED: photosystem II reac...	[more]
gi\|694314287\|ref\|XP_009370523.1\|	2.2e-59	66.4	PREDICTED: photosystem II reac...	[more]
gi\|657981392\|ref\|XP_008382711.1\|	6.3e-59	66.3	PREDICTED: photosystem II reac...	[more]

BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RZ56_SPIOL	1.1e-99	100.	Photosystem II reaction center...	[more]
A0A0J8ERL5_BETVU	2.1e-85	85.8	Photosystem II reaction center...	[more]
D7U379_VITVI	5.8e-59	65.7	Photosystem II reaction center...	[more]
A0A0B0MPB9_GOSAR	2.2e-58	65.5	Photosystem II reaction center...	[more]
A0A0D2QS78_GOSRA	3.7e-58	65.5	Photosystem II reaction center...	[more]

BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PSB28_ORYSJ	3.0e-53	60.7	Photosystem II reaction center...	[more]
PSB28_ARATH	2.7e-49	59.8	Photosystem II reaction center...	[more]
PSB28_PHATC	4.1e-34	57.0	Photosystem II reaction center...	[more]
PSB28_ODOSI	2.1e-33	56.1	Photosystem II reaction center...	[more]
PSB28_GUITH	2.1e-33	60.9	Photosystem II reaction center...	[more]

BLAST of Spo23505.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G28660.2	2.6e-50	62.2	photosystem II reaction center...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	PRODOM	PD012692		coord: 77..176 score: 4.0
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 73..182 score: 29
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 76..181 score: 1.5
IPR005610	Photosystem II Psb28, class 1	TIGRFAMs	TIGR03047	TIGR03047	coord: 76..182 score: 1.8
None	No IPR available	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 3..184 score: 3.9E
None	No IPR available	PANTHER	PTHR34963:SF2	PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTIC	coord: 3..184 score: 3.9E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0035725	sodium ion transmembrane transport
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0070981	L-asparagine biosynthetic process
biological_process	GO:0015721	bile acid and bile salt transport
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006849	plasma membrane pyruvate transport
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015976	carbon utilization
biological_process	GO:0001731	formation of translation preinitiation complex
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006555	methionine metabolic process
biological_process	GO:0006431	methionyl-tRNA aminoacylation
biological_process	GO:0048481	plant ovule development
biological_process	GO:0006448	regulation of translational elongation
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005887	integral component of plasma membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0050897	cobalt ion binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0030955	potassium ion binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0050833	pyruvate transmembrane transporter activity
molecular_function	GO:0008508	bile acid:sodium symporter activity
molecular_function	GO:0004825	methionine-tRNA ligase activity
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0031177	phosphopantetheine binding
molecular_function	GO:0004743	pyruvate kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo28041	0.77	Barchart \| Table
Spo22501	0.71	Barchart \| Table
Spo17151	0.70	Barchart \| Table
Spo03007	0.70	Barchart \| Table
Spo06097	0.69	Barchart \| Table
Spo05708	0.68	Barchart \| Table
Spo19305	0.68	Barchart \| Table
Spo25003	0.68	Barchart \| Table
Spo06720	0.68	Barchart \| Table
Spo23921	0.67	Barchart \| Table
Spo25733	0.67	Barchart \| Table
Spo14238	0.66	Barchart \| Table
Spo01183	0.65	Barchart \| Table