Spo16805 (gene) | SpinachBase

Overview


Name	Spo16805
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 27077357 .. 27078833 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAATTGGTATGTACGTTCAAGATTTATAAATCATACATTAGCTTTAGAGGGAGAAATATTTTGTACGAAGTAGACCGATCAAATAATAATTTTAGAATATTTGTGCATGTACGAGATATAATATAGTTTCATTTTATAATCAATTATTACCCTAAGTAATTAGAAGGTTTCACGCAAAAAAAAAATGAAATATGTTAATTATTTTATTGTAGAACGCTTGTCAGATTTGTAGCTAGTGTCTTGACAAACGTATAATATATGAGAGTTCAAAATATTATCTTTAACTTTTACCACTTTTTAAAAACAAAACGTAATTATTATAGGTAAGATGTTTAAATTACAGTCCGTATGCACTAAGATTCTATATATATATATTATACTTGTTAAAACTTAATATCTCCGGAAAGTGTGTCAAATATAAGGTTTTAACAATATATCATAATGTTAAATGGTGTGTATAAATATCTCAAATCTATTATTAACTGGTGATGAATCAATTGTATTGGTTAACTGACCATTTATTTATACACTACATATGAAACCTAGAATAACAGGCAAATACCAGTTAACTGTTTAGGCGAAACGTATAAATGGTAAACTTCGGGTTAGTACATAAGCTAAATAGATTATATGATAGTTTTTGTTATAAGTGACTAATTTCTATGTCATATATTGGCTGTTATAAACCGTATAAATTTAAAATATTTAACCTAACATATGCGATGTATGTTTGAATTAGATTATGTGTAGAATTTGATTATGTATACATACATAGGAAATGTTGTATATAAGTTAGTAAAAATATTGATGAATCTTTTAATTATTTATCTATTTTTCCATATTAGTTATTGTTACCTAAAATACAATAAGTTAAATATGACAAAAACAATTATATACCTCGTATTAATTAATTAATATTAAAAGAGAGGCGAATCAATGAGTGACATTTGTCATCACCACATTGATTTCCTCTCTTTTAGTATATTATATAGATAACACATAAGAGTAGTTGTAGCAATAGCAAAATGATTAATGGAGTAATTTACGTGCTAAGCAACAGTTTAGTAAAAATGGATCAATCTATCTCTGTCCTCCTACTACTACGACTACTACTGCCTCTGTCACCACTGTTCCCTTTGTAAATCCCGTCCTACCTCTCTTTCTCTCTCTTCAATTTCGTAGAGAGAGAAGTCAGACATAAAGGGTCACCTCATTTTCAACTTTCAAGCTTTGAATTCTCTAAACCCCATTATCTTCATCAATTCCCTCAACCGTTTTCCACCACCATTATCCTGTTTTCAAAGGTTCAGTTTTTTTTTTTATATATATATATACTTATTATTTTTCCATGGCTTTTGATCTGTGTTTATAGCATAATTCTGGCAGATCTGTATGTAATTTTGCACCAAATTCTAGAATTTTGCTTCAAAATTTTCTCTTAGGCATTTTATCAAGCACTTGGTGTTCATAA

mRNA sequence

ATGATTGAATTGAGAGAGAAGTCAGACATAAAGGGTCACCTCATTTTCAACTTTCAAGCTTTGAATTCTCTAAACCCCATTATCTTCATCAATTCCCTCAACCGTTTTCCACCACCATTATCCTGTTTTCAAAGATCTGTATGTAATTTTGCACCAAATTCTAGAATTTTGCTTCAAAATTTTCTCTTAGGCATTTTATCAAGCACTTGGTGTTCATAA

Coding sequence (CDS)

ATGATTGAATTGAGAGAGAAGTCAGACATAAAGGGTCACCTCATTTTCAACTTTCAAGCTTTGAATTCTCTAAACCCCATTATCTTCATCAATTCCCTCAACCGTTTTCCACCACCATTATCCTGTTTTCAAAGATCTGTATGTAATTTTGCACCAAATTCTAGAATTTTGCTTCAAAATTTTCTCTTAGGCATTTTATCAAGCACTTGGTGTTCATAA

Protein sequence

MIELREKSDIKGHLIFNFQALNSLNPIIFINSLNRFPPPLSCFQRSVCNFAPNSRILLQNFLLGILSSTWCS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo16805.1	Spo16805.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo16805.1 vs. NCBI nr
BLAST of Spo16805.1 vs. UniProtKB/TrEMBL
BLAST of Spo16805.1 vs. ExPASy Swiss-Prot
BLAST of Spo16805.1 vs. TAIR (Arabidopsis)

BLAST of Spo16805.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo16805.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo16805.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo16805.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009657	plastid organization
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009637	response to blue light
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0030091	protein repair
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0010218	response to far red light
biological_process	GO:0007033	vacuole organization
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0010189	vitamin E biosynthetic process
biological_process	GO:0016926	protein desumoylation
biological_process	GO:0010114	response to red light
biological_process	GO:0016310	phosphorylation
biological_process	GO:0050665	hydrogen peroxide biosynthetic process
biological_process	GO:0016487	farnesol metabolic process
biological_process	GO:0048440	carpel development
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0006508	proteolysis
biological_process	GO:0050896	response to stimulus
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0006591	ornithine metabolic process
biological_process	GO:0048481	plant ovule development
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0009723	response to ethylene
biological_process	GO:0009750	response to fructose
biological_process	GO:0009749	response to glucose
biological_process	GO:0009744	response to sucrose
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0016049	cell growth
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0007030	Golgi organization
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0044425	membrane part
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009348	ornithine carbamoyltransferase complex
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0046862	chromoplast membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0009916	alternative oxidase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016746	transferase activity, transferring acyl groups
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008113	peptide-methionine (S)-S-oxide reductase activity
molecular_function	GO:0052671	geranylgeraniol kinase activity
molecular_function	GO:0052670	geraniol kinase activity
molecular_function	GO:0052669	CTP:2-trans,-6-trans-farnesol kinase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003993	acid phosphatase activity
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0004585	ornithine carbamoyltransferase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0016866	intramolecular transferase activity
molecular_function	GO:0031072	heat shock protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10235	0.77	Barchart \| Table
Spo02932	0.73	Barchart \| Table
Spo16213	0.73	Barchart \| Table
Spo04383	0.72	Barchart \| Table
Spo21155	0.72	Barchart \| Table
Spo27081	0.71	Barchart \| Table
Spo18171	0.71	Barchart \| Table
Spo22811	0.70	Barchart \| Table
Spo06293	0.70	Barchart \| Table
Spo09202	0.69	Barchart \| Table
Spo21215	0.69	Barchart \| Table
Spo28058	0.69	Barchart \| Table
Spo24046	0.69	Barchart \| Table
Spo23549	0.69	Barchart \| Table
Spo14678	0.69	Barchart \| Table
Spo14225	0.68	Barchart \| Table
Spo21496	0.68	Barchart \| Table
Spo05073	0.68	Barchart \| Table
Spo20544	0.68	Barchart \| Table
Spo06972	0.68	Barchart \| Table
Spo24808	0.68	Barchart \| Table
Spo09769	0.68	Barchart \| Table
Spo05125	0.68	Barchart \| Table
Spo18195	0.67	Barchart \| Table
Spo08713	0.67	Barchart \| Table
Spo09554	0.67	Barchart \| Table
Spo10404	0.67	Barchart \| Table
Spo14938	0.67	Barchart \| Table
Spo25876	0.67	Barchart \| Table
Spo17250	0.66	Barchart \| Table
Spo25107	0.66	Barchart \| Table
Spo21383	0.66	Barchart \| Table
Spo04653	0.66	Barchart \| Table
Spo12302	0.66	Barchart \| Table
Spo12029	0.66	Barchart \| Table
Spo01261	0.65	Barchart \| Table
Spo20869	0.65	Barchart \| Table
Spo14342	0.65	Barchart \| Table
Spo13614	0.65	Barchart \| Table
Spo06505	0.65	Barchart \| Table
Spo25758	0.65	Barchart \| Table
Spo06362	0.65	Barchart \| Table