Spo20420 (gene) | SpinachBase

Overview


Name	Spo20420
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	PRA1 family protein E (AtPRA1.E) (Prenylated Rab acceptor 4)
Location	chr6 : 29528260 .. 29528847 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCCTCCTCCCCATACACCCCAATCACCACCTCCTCCACTACACCACCCACCTCAACCCCACTCTCCGCCAACCTCGACTTCATCTCCCGCGCCAAACACCGCCTCTACGGCACCTTCTCCTCCCGCCGTCCATGGAGTCAATTCTTCGATTACCACTCCATCTCCTTCCCCCACAACCTCTCCGACGCCGTCTCCCGTCTCAAAACAAACTTCTCATACTTCCGTATGAACTTCACCATGATCGTTCTCTTAATCCTCTTTGTCTCTCTCCTCTGGCACCCAATCTCTCTCATCGTCTTCCTCGTCATGATGGTGGCGTGGCTATTCCTCTTTTTTCTCCGTGAAGAACCGCTCATTTTATTCGGCCGGTCTATTGATGACCGGATCATTCTTGCAGTTCTCTCGGTTATGACCGTCGGTTTTCTACTATTGACCGGTGCTACCTGGAATATATTGATCGCTTTGGCGGTTGGTGTGGTGGTTGTTTTCATTTACTCGGTGTTTCGCCGGTCTGATGATTTGTTTTTGGATGAAGAGGAGGCTGCTGCCGGCGGTTTGCTTGCCGGTCGGACCGGTATTTAG

mRNA sequence

ATGACATCCTCCTCCCCATACACCCCAATCACCACCTCCTCCACTACACCACCCACCTCAACCCCACTCTCCGCCAACCTCGACTTCATCTCCCGCGCCAAACACCGCCTCTACGGCACCTTCTCCTCCCGCCGTCCATGGAGTCAATTCTTCGATTACCACTCCATCTCCTTCCCCCACAACCTCTCCGACGCCGTCTCCCGTCTCAAAACAAACTTCTCATACTTCCGTATGAACTTCACCATGATCGTTCTCTTAATCCTCTTTGTCTCTCTCCTCTGGCACCCAATCTCTCTCATCGTCTTCCTCGTCATGATGGTGGCGTGGCTATTCCTCTTTTTTCTCCGTGAAGAACCGCTCATTTTATTCGGCCGGTCTATTGATGACCGGATCATTCTTGCAGTTCTCTCGGTTATGACCGTCGGTTTTCTACTATTGACCGGTGCTACCTGGAATATATTGATCGCTTTGGCGGTTGGTGTGGTGGTTGTTTTCATTTACTCGGTGTTTCGCCGGTCTGATGATTTGTTTTTGGATGAAGAGGAGGCTGCTGCCGGCGGTTTGCTTGCCGGTCGGACCGGTATTTAG

Coding sequence (CDS)

ATGACATCCTCCTCCCCATACACCCCAATCACCACCTCCTCCACTACACCACCCACCTCAACCCCACTCTCCGCCAACCTCGACTTCATCTCCCGCGCCAAACACCGCCTCTACGGCACCTTCTCCTCCCGCCGTCCATGGAGTCAATTCTTCGATTACCACTCCATCTCCTTCCCCCACAACCTCTCCGACGCCGTCTCCCGTCTCAAAACAAACTTCTCATACTTCCGTATGAACTTCACCATGATCGTTCTCTTAATCCTCTTTGTCTCTCTCCTCTGGCACCCAATCTCTCTCATCGTCTTCCTCGTCATGATGGTGGCGTGGCTATTCCTCTTTTTTCTCCGTGAAGAACCGCTCATTTTATTCGGCCGGTCTATTGATGACCGGATCATTCTTGCAGTTCTCTCGGTTATGACCGTCGGTTTTCTACTATTGACCGGTGCTACCTGGAATATATTGATCGCTTTGGCGGTTGGTGTGGTGGTTGTTTTCATTTACTCGGTGTTTCGCCGGTCTGATGATTTGTTTTTGGATGAAGAGGAGGCTGCTGCCGGCGGTTTGCTTGCCGGTCGGACCGGTATTTAG

Protein sequence

MTSSSPYTPITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSIDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAAAGGLLAGRTGI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20420.1	Spo20420.1	mRNA

Homology

[Close]

BLAST of Spo20420.1 vs. NCBI nr
Match: gi|902198675|gb|KNA13752.1| (hypothetical protein SOVF_113660 [Spinacia oleracea])

HSP 1 Score: 359.8 bits (922), Expect = 3.100e-96
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1

		  
Query: 1   MTSSSPYTPITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPH 60
           MTSSSPYTPITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPH
Sbjct: 1   MTSSSPYTPITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPH 60

Query: 61  NLSDAVSRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPL 120
           NLSDAVSRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPL
Sbjct: 61  NLSDAVSRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPL 120

Query: 121 ILFGRSIDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDE 180
           ILFGRSIDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDE
Sbjct: 121 ILFGRSIDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDE 180

Query: 181 EEAAAGGLLAGRTGI 196
           EEAAAGGLLAGRTGI
Sbjct: 181 EEAAAGGLLAGRTGI 195

[Close]

BLAST of Spo20420.1 vs. NCBI nr
Match: gi|731349605|ref|XP_010686079.1| (PREDICTED: PRA1 family protein F3-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 275.8 bits (704), Expect = 5.900e-71
Identity = 149/195 (76.41%), Postives = 170/195 (87.18%), Query Frame = 1

		  
Query: 2   TSSSPYTPITTSSTTPPTST-PLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPH 61
           +SSSPYTPIT+S     TST PLSANLDFISRAKH LY   S+RRPW Q FD+HS+SFPH
Sbjct: 3   SSSSPYTPITSSPPPSSTSTTPLSANLDFISRAKHNLYNNLSARRPWRQIFDHHSLSFPH 62

Query: 62  NLSDAVSRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPL 121
           NLSDA+SRLKTN SYFRMNF M +LLILF+SLLWHPISLIVFL +M+AWLFL+FLR+EPL
Sbjct: 63  NLSDAISRLKTNLSYFRMNFAMFILLILFLSLLWHPISLIVFLALMLAWLFLYFLRDEPL 122

Query: 122 ILFGRSIDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDE 181
            LF RSIDDRI+L +LSV+TVG LLLTGAT NILI++AVGV +V IYSVFRRSDDLFLDE
Sbjct: 123 HLFSRSIDDRIVLTILSVLTVGLLLLTGATGNILISVAVGVSIVVIYSVFRRSDDLFLDE 182

Query: 182 EEAAAGGLLAGRTGI 196
           ++AAAGGLLA RT +
Sbjct: 183 DQAAAGGLLAARTSV 197

[Close]

BLAST of Spo20420.1 vs. NCBI nr
Match: gi|225442317|ref|XP_002279772.1| (PREDICTED: PRA1 family protein F2-like [Vitis vinifera])

HSP 1 Score: 204.1 bits (518), Expect = 2.200e-49
Identity = 108/180 (60.00%), Postives = 143/180 (79.44%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRL 69
           +TT  T P +S   S +L+F+SRAK RL    ++RRPW + F+  SI  P N  DAV+R+
Sbjct: 1   MTTYGTIPTSSAGDSPSLEFVSRAKERLRSGLATRRPWKEMFNIRSIGLPINFPDAVNRV 60

Query: 70  KTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSIDD 129
           KTN S+FRMN+ +IVLLILF+SLLWHPISLIVF+VMM  WLFL+FLR+EPL++F R+IDD
Sbjct: 61  KTNISFFRMNYVIIVLLILFLSLLWHPISLIVFIVMMAVWLFLYFLRDEPLVVFHRTIDD 120

Query: 130 RIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAAAGGLL 189
           R++L VL ++T+ FLLLT AT NIL++L +GV VV +++ FR++DDLFLDEE A+AGGLL
Sbjct: 121 RVVLIVLLILTIVFLLLTHATLNILVSLLIGVAVVVLHAAFRKTDDLFLDEEAASAGGLL 180

[Close]

BLAST of Spo20420.1 vs. NCBI nr
Match: gi|1012219672|ref|XP_015935411.1| (PREDICTED: PRA1 family protein F3 [Arachis duranensis])

HSP 1 Score: 198.4 bits (503), Expect = 1.200e-47
Identity = 107/175 (61.14%), Postives = 139/175 (79.43%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRL 69
           +TT  T P +S+P S+NL+F+SRAK R+     +RRPW   F+ HS   P   SDA+SR+
Sbjct: 1   MTTYGTIPTSSSP-SSNLEFLSRAKQRIKEGLGTRRPWKLMFNLHSFGLPSGFSDALSRV 60

Query: 70  KTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSIDD 129
           +TN +YF+MN+ ++VLL+LF+SLLWHPISLIVF+V+M AWLFL+FLR+EPL +FGR I D
Sbjct: 61  RTNIAYFQMNYAIVVLLVLFLSLLWHPISLIVFVVLMAAWLFLYFLRDEPLTIFGRLISD 120

Query: 130 RIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAA 185
           R+IL V+SV+TV  LLLTGAT NILIAL VGVV+V +++  RR+DDLF DEEEAA
Sbjct: 121 RVILIVMSVLTVVLLLLTGATANILIALLVGVVLVVVHAALRRTDDLFFDEEEAA 174

[Close]

BLAST of Spo20420.1 vs. NCBI nr
Match: gi|568823292|ref|XP_006466052.1| (PREDICTED: PRA1 family protein F2 [Citrus sinensis])

HSP 1 Score: 197.6 bits (501), Expect = 2.000e-47
Identity = 103/172 (59.88%), Postives = 137/172 (79.65%), Query Frame = 1

		  
Query: 12  TSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRLKT 71
           TS  T PTS+  ++NL++ISRAK R+     SR PW   FD H++ FP N  +A++R+K 
Sbjct: 2   TSYGTIPTSSGPASNLEYISRAKERIKAGLGSRHPWKLMFDIHAVKFPANFKEAINRVKV 61

Query: 72  NFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSIDDRI 131
           N +YFRMN+ +IVLL+LF+SLLWHP+SLIVF+VMMVAWLFL+FLR+EPL++ GR+IDDR+
Sbjct: 62  NAAYFRMNYAIIVLLVLFLSLLWHPVSLIVFIVMMVAWLFLYFLRDEPLVVVGRTIDDRV 121

Query: 132 ILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEA 184
           +L VLSV+T+ FL LT AT NIL+AL VG VVV +++  R++DDLFLDEE A
Sbjct: 122 VLLVLSVLTLVFLFLTRATENILLALLVGAVVVLLHAALRKTDDLFLDEESA 173

[Close]

BLAST of Spo20420.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4L8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113660 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 2.100e-96
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1

		  
Query: 1   MTSSSPYTPITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPH 60
           MTSSSPYTPITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPH
Sbjct: 1   MTSSSPYTPITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPH 60

Query: 61  NLSDAVSRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPL 120
           NLSDAVSRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPL
Sbjct: 61  NLSDAVSRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPL 120

Query: 121 ILFGRSIDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDE 180
           ILFGRSIDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDE
Sbjct: 121 ILFGRSIDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDE 180

Query: 181 EEAAAGGLLAGRTGI 196
           EEAAAGGLLAGRTGI
Sbjct: 181 EEAAAGGLLAGRTGI 195

[Close]

BLAST of Spo20420.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ER71_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176640 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 4.100e-71
Identity = 149/195 (76.41%), Postives = 170/195 (87.18%), Query Frame = 1

		  
Query: 2   TSSSPYTPITTSSTTPPTST-PLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPH 61
           +SSSPYTPIT+S     TST PLSANLDFISRAKH LY   S+RRPW Q FD+HS+SFPH
Sbjct: 3   SSSSPYTPITSSPPPSSTSTTPLSANLDFISRAKHNLYNNLSARRPWRQIFDHHSLSFPH 62

Query: 62  NLSDAVSRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPL 121
           NLSDA+SRLKTN SYFRMNF M +LLILF+SLLWHPISLIVFL +M+AWLFL+FLR+EPL
Sbjct: 63  NLSDAISRLKTNLSYFRMNFAMFILLILFLSLLWHPISLIVFLALMLAWLFLYFLRDEPL 122

Query: 122 ILFGRSIDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDE 181
            LF RSIDDRI+L +LSV+TVG LLLTGAT NILI++AVGV +V IYSVFRRSDDLFLDE
Sbjct: 123 HLFSRSIDDRIVLTILSVLTVGLLLLTGATGNILISVAVGVSIVVIYSVFRRSDDLFLDE 182

Query: 182 EEAAAGGLLAGRTGI 196
           ++AAAGGLLA RT +
Sbjct: 183 DQAAAGGLLAARTSV 197

[Close]

BLAST of Spo20420.1 vs. UniProtKB/TrEMBL
Match: F6HY30_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02400 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.500e-49
Identity = 108/180 (60.00%), Postives = 143/180 (79.44%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRL 69
           +TT  T P +S   S +L+F+SRAK RL    ++RRPW + F+  SI  P N  DAV+R+
Sbjct: 1   MTTYGTIPTSSAGDSPSLEFVSRAKERLRSGLATRRPWKEMFNIRSIGLPINFPDAVNRV 60

Query: 70  KTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSIDD 129
           KTN S+FRMN+ +IVLLILF+SLLWHPISLIVF+VMM  WLFL+FLR+EPL++F R+IDD
Sbjct: 61  KTNISFFRMNYVIIVLLILFLSLLWHPISLIVFIVMMAVWLFLYFLRDEPLVVFHRTIDD 120

Query: 130 RIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAAAGGLL 189
           R++L VL ++T+ FLLLT AT NIL++L +GV VV +++ FR++DDLFLDEE A+AGGLL
Sbjct: 121 RVVLIVLLILTIVFLLLTHATLNILVSLLIGVAVVVLHAAFRKTDDLFLDEEAASAGGLL 180

[Close]

BLAST of Spo20420.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QNV5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G059900 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.100e-47
Identity = 104/183 (56.83%), Postives = 146/183 (79.78%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTP-LSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSR 69
           +T   T P +STP  SAN++++SRAK R+     +RRPW   F++HSI+FP NLS+A++R
Sbjct: 1   MTNYGTIPTSSTPGPSANIEYLSRAKERIKEGLGARRPWKLMFNFHSINFPGNLSEAITR 60

Query: 70  LKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSID 129
           ++TN +YFRMN+ MIVLLILF+SLLWHPISL+VF+ MM AWLFL+FLR+EPL++F R+ID
Sbjct: 61  VRTNVAYFRMNYAMIVLLILFLSLLWHPISLLVFVAMMAAWLFLYFLRDEPLVVFRRTID 120

Query: 130 DRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAAAGGL 189
           DR++L VL V+T+ FLLLT AT NIL++L +G VVV +++ FRR+DDL+   +E +  GL
Sbjct: 121 DRVVLVVLGVLTILFLLLTDATTNILVSLLIGAVVVLVHASFRRTDDLY---DEESGEGL 180

Query: 190 LAG 192
           ++G
Sbjct: 181 ISG 180

[Close]

BLAST of Spo20420.1 vs. UniProtKB/TrEMBL
Match: M0ZRA8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400002504 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.200e-47
Identity = 102/172 (59.30%), Postives = 138/172 (80.23%), Query Frame = 1

		  
Query: 12  TSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRLKT 71
           T+  T PTS+    N++FISRAK  L    ++RRPW + F++HS + P  +SDA+SR+KT
Sbjct: 2   TNYGTIPTSSSGPVNVEFISRAKDVLKEGLAARRPWKEMFNFHSFNLPSGVSDAISRIKT 61

Query: 72  NFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSIDDRI 131
           NFS+F+ N+ ++VL+I+F+SLLWHPISLIVF+V+M  WLFL+FLR+EPL++FGR I DR+
Sbjct: 62  NFSFFQTNYAIVVLVIVFLSLLWHPISLIVFIVLMAVWLFLYFLRDEPLVIFGRLISDRV 121

Query: 132 ILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEA 184
           +L VLSV+T+  LL TGAT NILIALAVGV VV I+++ R++DDLFLDEE A
Sbjct: 122 VLIVLSVLTLALLLFTGATSNILIALAVGVFVVLIHALIRKTDDLFLDEESA 173

[Close]

BLAST of Spo20420.1 vs. ExPASy Swiss-Prot
Match: PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.400e-42
Identity = 94/177 (53.11%), Postives = 129/177 (72.88%), Query Frame = 1

		  
Query: 7   YTPITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAV 66
           Y  I TSS   P       +++ +SRAKHR+    ++RR W   FD+HS+  PH +SDA 
Sbjct: 4   YGAIPTSSHASPL-----VDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAF 63

Query: 67  SRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRS 126
           +R+KTN +YFRMN+ ++VL+++F SL+WHP SLIVF V++V W+FL+FLR+EP+ LF   
Sbjct: 64  TRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQ 123

Query: 127 IDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEA 184
           IDDR +L VLSV+TV  LLLT AT+NI+ AL  G V+V I+SV R+++DLFLDEE A
Sbjct: 124 IDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAA 175

[Close]

BLAST of Spo20420.1 vs. ExPASy Swiss-Prot
Match: PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.400e-40
Identity = 97/185 (52.43%), Postives = 131/185 (70.81%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTPLSA-NLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSR 69
           +T     P +S P  A +L++ISRAKHR+    ++RRPW   FD+ S++ PH   DA+SR
Sbjct: 1   MTNYGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISR 60

Query: 70  LKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSID 129
           +KTN  YFR N+ + VL ILF+SLL+HP SLIV  +++V W+FL+FLR+EPL++FG  ID
Sbjct: 61  IKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQID 120

Query: 130 DRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAA---A 189
           DR +L  LSV+TV  LLLT AT NIL +L    V+V I++  RRSD+LFLDEE AA   A
Sbjct: 121 DRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEA 180

Query: 190 GGLLA 191
            GL++
Sbjct: 181 SGLMS 185

[Close]

BLAST of Spo20420.1 vs. ExPASy Swiss-Prot
Match: PR1F4_ARATH (PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.200e-37
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRL 69
           ITTSS   P     + N + ISRAK R+    ++RR W   FD HS   PH +SD  SR+
Sbjct: 7   ITTSSHASP-----AVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRI 66

Query: 70  KTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSIDD 129
           KTN +YFR N+ +++L ++F SL+WHP SLIVF  ++  W+FL+FLR+ PL +F   IDD
Sbjct: 67  KTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDD 126

Query: 130 RIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEA 184
           R +L  LSV+T+  LLLT AT+NI+ AL  G V+V I++V R++DDLFLDEE A
Sbjct: 127 RAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAA 175

[Close]

BLAST of Spo20420.1 vs. ExPASy Swiss-Prot
Match: PR1F1_ARATH (PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.200e-30
Identity = 73/177 (41.24%), Postives = 118/177 (66.67%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTPLSANLDFISRA--KHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVS 69
           +TT  T   +S  L+  L++I+R   +H+  G  ++RRPW Q  D  S +FP  L+  ++
Sbjct: 1   MTTYGTNQKSSNDLAPKLEYITRGINQHKRSG-LATRRPWKQMLDLGSFNFPRKLATVIT 60

Query: 70  RLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSI 129
           R++ N  YF+ N+T++VL  +F+SL+W+P SL+V L ++ AWLFL+FLR+EPL +F R I
Sbjct: 61  RIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREI 120

Query: 130 DDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAA 185
           D RI+L ++SV+T+  L LT A  NI +A+  G + V  ++  R+++DLF  +EE +
Sbjct: 121 DHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETS 176

[Close]

BLAST of Spo20420.1 vs. ExPASy Swiss-Prot
Match: PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.600e-28
Identity = 68/180 (37.78%), Postives = 118/180 (65.56%), Query Frame = 1

		  
Query: 18  PTSTPLSANLDFIS-RAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRLKTNFSYF 77
           P+ST  +  +  +S RAK       ++ RPW +  D  ++S P    +A++ LK N SYF
Sbjct: 20  PSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYF 79

Query: 78  RMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLRE--EPLILFGRSIDDRIILA 137
           R N+ + VL I+F+ L++HP+S+I F+V+ + W+ L+F R+  + +++ G+ +DD+I+L 
Sbjct: 80  RGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLV 139

Query: 138 VLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAAAGGLLAGRTG 195
           +LS++TV  L+ T    N+L++L +G+++V  +  FR +DDLFLDEE A  GGL++  +G
Sbjct: 140 LLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSAGSG 199

[Close]

BLAST of Spo20420.1 vs. TAIR (Arabidopsis)
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein)

HSP 1 Score: 172.6 bits (436), Expect = 2.500e-43
Identity = 94/177 (53.11%), Postives = 129/177 (72.88%), Query Frame = 1

		  
Query: 7   YTPITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAV 66
           Y  I TSS   P       +++ +SRAKHR+    ++RR W   FD+HS+  PH +SDA 
Sbjct: 4   YGAIPTSSHASPL-----VDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAF 63

Query: 67  SRLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRS 126
           +R+KTN +YFRMN+ ++VL+++F SL+WHP SLIVF V++V W+FL+FLR+EP+ LF   
Sbjct: 64  TRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQ 123

Query: 127 IDDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEA 184
           IDDR +L VLSV+TV  LLLT AT+NI+ AL  G V+V I+SV R+++DLFLDEE A
Sbjct: 124 IDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAA 175

[Close]

BLAST of Spo20420.1 vs. TAIR (Arabidopsis)
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein)

HSP 1 Score: 166.8 bits (421), Expect = 1.400e-41
Identity = 97/185 (52.43%), Postives = 131/185 (70.81%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTPLSA-NLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSR 69
           +T     P +S P  A +L++ISRAKHR+    ++RRPW   FD+ S++ PH   DA+SR
Sbjct: 1   MTNYGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISR 60

Query: 70  LKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSID 129
           +KTN  YFR N+ + VL ILF+SLL+HP SLIV  +++V W+FL+FLR+EPL++FG  ID
Sbjct: 61  IKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQID 120

Query: 130 DRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAA---A 189
           DR +L  LSV+TV  LLLT AT NIL +L    V+V I++  RRSD+LFLDEE AA   A
Sbjct: 121 DRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEA 180

Query: 190 GGLLA 191
            GL++
Sbjct: 181 SGLMS 185

[Close]

BLAST of Spo20420.1 vs. TAIR (Arabidopsis)
Match: AT3G13710.1 (prenylated RAB acceptor 1.F4)

HSP 1 Score: 155.2 bits (391), Expect = 4.100e-38
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTPLSANLDFISRAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRL 69
           ITTSS   P     + N + ISRAK R+    ++RR W   FD HS   PH +SD  SR+
Sbjct: 7   ITTSSHASP-----AVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRI 66

Query: 70  KTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSIDD 129
           KTN +YFR N+ +++L ++F SL+WHP SLIVF  ++  W+FL+FLR+ PL +F   IDD
Sbjct: 67  KTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDD 126

Query: 130 RIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEA 184
           R +L  LSV+T+  LLLT AT+NI+ AL  G V+V I++V R++DDLFLDEE A
Sbjct: 127 RAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAA 175

[Close]

BLAST of Spo20420.1 vs. TAIR (Arabidopsis)
Match: AT1G17700.1 (prenylated RAB acceptor 1.F1)

HSP 1 Score: 133.7 bits (335), Expect = 1.300e-31
Identity = 73/177 (41.24%), Postives = 118/177 (66.67%), Query Frame = 1

		  
Query: 10  ITTSSTTPPTSTPLSANLDFISRA--KHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVS 69
           +TT  T   +S  L+  L++I+R   +H+  G  ++RRPW Q  D  S +FP  L+  ++
Sbjct: 1   MTTYGTNQKSSNDLAPKLEYITRGINQHKRSG-LATRRPWKQMLDLGSFNFPRKLATVIT 60

Query: 70  RLKTNFSYFRMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLREEPLILFGRSI 129
           R++ N  YF+ N+T++VL  +F+SL+W+P SL+V L ++ AWLFL+FLR+EPL +F R I
Sbjct: 61  RIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREI 120

Query: 130 DDRIILAVLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAA 185
           D RI+L ++SV+T+  L LT A  NI +A+  G + V  ++  R+++DLF  +EE +
Sbjct: 121 DHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETS 176

[Close]

BLAST of Spo20420.1 vs. TAIR (Arabidopsis)
Match: AT1G08770.1 (prenylated RAB acceptor 1.E)

HSP 1 Score: 126.3 bits (316), Expect = 2.000e-29
Identity = 68/180 (37.78%), Postives = 118/180 (65.56%), Query Frame = 1

		  
Query: 18  PTSTPLSANLDFIS-RAKHRLYGTFSSRRPWSQFFDYHSISFPHNLSDAVSRLKTNFSYF 77
           P+ST  +  +  +S RAK       ++ RPW +  D  ++S P    +A++ LK N SYF
Sbjct: 20  PSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYF 79

Query: 78  RMNFTMIVLLILFVSLLWHPISLIVFLVMMVAWLFLFFLRE--EPLILFGRSIDDRIILA 137
           R N+ + VL I+F+ L++HP+S+I F+V+ + W+ L+F R+  + +++ G+ +DD+I+L 
Sbjct: 80  RGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLV 139

Query: 138 VLSVMTVGFLLLTGATWNILIALAVGVVVVFIYSVFRRSDDLFLDEEEAAAGGLLAGRTG 195
           +LS++TV  L+ T    N+L++L +G+++V  +  FR +DDLFLDEE A  GGL++  +G
Sbjct: 140 LLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSAGSG 199

The following BLAST results are available for this feature:

BLAST of Spo20420.1 vs. NCBI nr
BLAST of Spo20420.1 vs. UniProtKB/TrEMBL
BLAST of Spo20420.1 vs. ExPASy Swiss-Prot
BLAST of Spo20420.1 vs. TAIR (Arabidopsis)

BLAST of Spo20420.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902198675\|gb\|KNA13752.1\|	3.1e-96	100.	hypothetical protein SOVF_1136...	[more]
gi\|731349605\|ref\|XP_010686079.1\|	5.9e-71	76.4	PREDICTED: PRA1 family protein...	[more]
gi\|225442317\|ref\|XP_002279772.1\|	2.2e-49	60.0	PREDICTED: PRA1 family protein...	[more]
gi\|1012219672\|ref\|XP_015935411.1\|	1.2e-47	61.1	PREDICTED: PRA1 family protein...	[more]
gi\|568823292\|ref\|XP_006466052.1\|	2.0e-47	59.8	PREDICTED: PRA1 family protein...	[more]

BLAST of Spo20420.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9R4L8_SPIOL	2.1e-96	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8ER71_BETVU	4.1e-71	76.4	Uncharacterized protein OS=Bet...	[more]
F6HY30_VITVI	1.5e-49	60.0	Putative uncharacterized prote...	[more]
A0A0D2QNV5_GOSRA	3.1e-47	56.8	Uncharacterized protein OS=Gos...	[more]
M0ZRA8_SOLTU	9.2e-47	59.3	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo20420.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
PR1F3_ARATH	4.4e-42	53.1	PRA1 family protein F3 OS=Arab...	[more]
PR1F2_ARATH	2.4e-40	52.4	PRA1 family protein F2 OS=Arab...	[more]
PR1F4_ARATH	7.2e-37	50.5	PRA1 family protein F4 OS=Arab...	[more]
PR1F1_ARATH	2.2e-30	41.2	PRA1 family protein F1 OS=Arab...	[more]
PRA1E_ARATH	3.6e-28	37.7	PRA1 family protein E OS=Arabi...	[more]

BLAST of Spo20420.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT3G13720.1	2.5e-43	53.1	PRA1 (Prenylated rab acceptor)...	[more]
AT1G55190.1	1.4e-41	52.4	PRA1 (Prenylated rab acceptor)...	[more]
AT3G13710.1	4.1e-38	50.5	prenylated RAB acceptor 1.F4	[more]
AT1G17700.1	1.3e-31	41.2	prenylated RAB acceptor 1.F1	[more]
AT1G08770.1	2.0e-29	37.7	prenylated RAB acceptor 1.E	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 41..181 score: 6.8
None	No IPR available	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 9..189 score: 1.6
None	No IPR available	PANTHER	PTHR19317:SF2	PRA1 FAMILY PROTEIN C-RELATED	coord: 9..189 score: 1.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005768	endosome
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17323	0.67	Barchart \| Table
Spo27003	0.67	Barchart \| Table
Spo20946	0.66	Barchart \| Table
Spo09202	0.65	Barchart \| Table
Spo22017	0.65	Barchart \| Table