Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTACTCAAAACTATACAACCCAAAAGCAAAGTATTCAATTTCAAAAACAAAGCTCTACTTATTATGTTGTGCAAGTGACATTCACATTCAGAAAACCCCTTACTCCCCAACAATATTCAAAAAGGGTCTAACCCACTATCTCGAATCGGGTTGACTTGACCTGATAAGACAATTCTTCTTACCTAAAATAACATTCAGAAAACAGGACATCCTGGCACAAGAGTAATGAGTAATGACAATGTCAGTGTTGCTAACATAGCCACACTTCAAATTCATTAAATGAGAGGAGCCAAAAAAATCAAACTTCCTACAAAAACTTCAACAGCTTCCCCAACACCTACAAGCAAGAGGAGCTTTAAAAGCCATATTAAAAAACAACATTTCTGTTTTAGTTTGCTAAGATCAAATACAAAACTTTATAATTTTGAGTGAGTTTTGTATTTGATCTAAGATAATCAAAATGCCTTCAATTTCAGCTGTTTTATCAAACTTTCCATTAACGATCCCTCCATCAAAGTTATTCAGAGGACGATCAACCGACAATAATGCCACACTTCTCTACAACTTTGGACCAAATTTACCTTCTCAAGTTACAAGATTGCAAGTTAAGCTTGATAATGTTCAAGACCCTTTGAAGCTCAACAATTTCACCAAGGTATGTACGTCCTGTTTAGGGTGAGGCTAATCGCGCTGCTGATTGGTTTAACTATATGTCCTGCCTCGAACTAATAAACTTTAAATTGTTATTGTCGATGACAAAGCATAAAACAATCTTGGTGTTTCAACCGCCACCTTAAGCTTTTTGACAAGTTTTGAATATATAAGACGGATTTATAGTCGTCTTTTTGGTGATTTTTGTGTGCAGACTGAACCCGAAAAAAGAAGGTATACACTAGATGAGTACGTAGTGGGTCAAAAATTCCTGGTTAGACTTTATGAGCTTGATATCCATCAAAAAGCATCATTGGAGGCTTTGCTTAATTATACACAGGTTTGATCCCGAACTTTACAAAATCATATATGGAGTACTATTTTAGAATATATGGAAAAAATTGTGGCGCTGATAGAGTATAAAACTAATCTTGGGGCTTCAACCATCAGCTTAAGCTTTTGGTTGAGTTGGTCCCTTGACAGGCGCTACAGTTTGTAAGCTTACATGATGAAATCGAATGCAGGAAACGGGGGTGAACCTATTCCAAAGTTCGGGACTAGTAGTGGAAGGATTTGGTGTGTCAAAGGAGATGACTAGTCGAAACCTAATATGGGTTATTGGAAGGATGCATGTTCAAGTCGAATCTTATCCTTCATGGTATGGTTTAATTACTACATTAATTAATTATACTCTTAATAGAAGAAAAAGACATTTAAATTTTTAATCAAGAAATACTTTTCTCTTTTTTGCATGAATTTAATTTTTGGATGAATTTAGGTAGGTTTAAATGTTGAATTGTACTATTCTACGGTTCTACCTTCCAACTACCTACTGTATTATTCATTAATGAAAATGTTGGGTCATATTCAGTACACTTGTCATTGATTGGGTCCAGCACCGGATTAAATCGGGAAATGCAAGTATGTAACGACGAATTAGTGAATTACTCTTCGGATCTGTTTCGTAATAATAGTCGTTTTAATAATAGTATAACATGTTAAGAGTGTATTCTAACATATTTAAAGTAATATTAGGTTGCCCAATCTTTTTTAGTTCGTAGATGGATGTGATTTCGTGTTTTAAGTTTGTGGAAAAATGTTAAATTATGGGTCATGATGGAAATCACAAAACTAAAGCCTAAGACGGAGTATGAATTATGTGTTTAACTAAAACAATAACGTTATGATACATTGATAATCTCCAACTATATATAATGAACTAAAATAGCCGATTAATGGAGTATACATTTGATATTTTTAAAACAATACTTCATATAATATGGGACATACTTAAGAAAGTTGTTAAAGTAACAAATATTTAGGAATGAATCAAGTATTTTTGTTCACTCTTGTCCCCCACCTTTCTCTGAGTCAAAATCCTCTATCCCATGATTCTCATTGCTCTACATTTGTGTACCACTTATGTGCCACTTTTTTTTTTTCTACTGGTTGATATTTATATATGGTAGGATAATTATTCCCCAAAATGGCCAACATTTTAGGATGTTTTAATTGGTTCTAAATTCACAGAAATTTCAACGTGTGTTACTATATATTTTGTGTGTACCAATTGCTTGTTGGTTCAGTGGTGATTGGGGCTGAACTTGGTAGGGAGAACCCATGTTCGATCCCTCGCAACAACAATTGGGAGGGGACTGGAACCTAACCACCCATAACTCGCCCGGAATCCGGATTAGCCCTAAGGGTGAACCGGCCGGATGCTAACACAAAAAAAAACTATATATTTTGTGTGTGCAATCGTACATAGAGAATCAGAAGGGTGGTTGATGTAGCTAGATGGCATTGAATACCAGGTTATTGTTATTGATTCGGATCCATTGGCAGGGGAGATATTGTTCAAGTGGAGACTTGGTGCTCAGGCTTAACAAAACATTGCCTCACATGTAGCTCTAGACTAATTGATGCAAGTACAGGAAACAATATCATGCGAGTTGACAGGTTCTAGCTCTTCGTTGAAACTTGTACAAACTTGGATGTATGTAGTTAAATTATGATGATTATATTATATATGCAAATGAAATGCAGTGAGTTTGTGATGATTAATGAGAAAACGAGGAGGCTATCAAAAATCCCAGAGGAGATCAAAGCTAAAGGAGATCCTTATGTCAAGGATTACATTGATCCCCCTCTTACTGAGGATAAGCTCAGGAAATTACATAAACTTGATCAAGACAAAGCCGATTATATCCTTGGAGGAATTAAGGTGCATTCACCGTTAATTTTATGCTAAATACTCCTAAACTATATTATCAGTTACGTTGATCAACTTCCTGCATGTGTTTAAGATAATGTAGTTTTAATTATGATTAAAAATTTCTGAAATTGCAGCCTTTATGGTTCGACTTGGATCCCAATCAACATGTCAATAATGTCAAGTACATATGCTGGATTCTTGAGGTACATTAATCATGAGATATCTCTCAATTTCAATCTGTTATTTTCAAGTACATTGGATCAATAATAATTGATCTGTTTTACTGGTATAAATCCGCCAACATATGGAGTCTAAGTTGGAAATAATCAGCTCTGCTAGTTTCCGGCTTAATGATGCAGGGAACCCCGGAAGCAGTGAGGGAAAACTATGAACTGAGATCGATAACATTGGAGTACAGGAGAGAATGTGGGAGAGATAGTGTGTTGCAATCCCTCTCAGCTGCATCTGCTCAAGTTCCTGACGAATATCATCATTTACTTCGTCTGGAAAATGGCAAGGAAGTTGCAAGAGCTAGAACCTCATGGACGAAGTCCAGTAAATTACTACGTAATTAGTGAACAAGTATAATACATCTTTTTTTCACCACGAGTTGATAACGAACTTGTTACAACCATATCATATCATCAACGGGTTTCTGAATCATGTGACATTGATCAGAGATATAAAGTACGGGTTTTAGGACCACCCCTCCCCCTACCTACATTTACTTCATGTACTCGACTTTGTTGCATTTCTTAGTTTCAGATTAAGGCCAAACTCAACCTGACCTGCCTTGTGAGTTTGTAACTTGTGAAAACTTATTTGTGTTACTAGATTGGTTATTCCAACGCTCCACTATTCATATTAAAACTCTGCTACACCAAAAACCATGGAAATTTTGACACAATTTCGAGTCAGAAAGTCTAACCCTAGAGCGTACATGCACCTACCTGTGTCCAACATGCATGATTACT ATGATTACTCAAAACTATACAACCCAAAAGCAAAGTATTCAATTTCAAAAACAAAGCTCTACTTATTATGTTGTGCAAGTGACATTCACATTCAGAAAACCCCTTACTCCCCAACAATATTCAAAAAGGGTCTAACCCACTATCTCGAATCGGGTTGACTTGACCTGATAAGACAATTCTTCTTACCTAAAATAACATTCAGAAAACAGGACATCCTGGCACAAGAGTAATGAGTAATGACAATGTCAGTGTTGCTAACATAGCCACACTTCAAATTCATTAAATGAGAGGAGCCAAAAAAATCAAACTTCCTACAAAAACTTCAACAGCTTCCCCAACACCTACAAGCAAGAGGAGCTTTAAAAGCCATATTAAAAAACAACATTTCTGTTTTAGTTTGCTAAGATCAAATACAAAACTTTATAATTTTGAGTGAGTTTTGTATTTGATCTAAGATAATCAAAATGCCTTCAATTTCAGCTGTTTTATCAAACTTTCCATTAACGATCCCTCCATCAAAGTTATTCAGAGGACGATCAACCGACAATAATGCCACACTTCTCTACAACTTTGGACCAAATTTACCTTCTCAAGTTACAAGATTGCAAGTTAAGCTTGATAATGTTCAAGACCCTTTGAAGCTCAACAATTTCACCAAGACTGAACCCGAAAAAAGAAGGTATACACTAGATGAGTACGTAGTGGGTCAAAAATTCCTGGTTAGACTTTATGAGCTTGATATCCATCAAAAAGCATCATTGGAGGCTTTGCTTAATTATACACAGGAAACGGGGGTGAACCTATTCCAAAGTTCGGGACTAGTAGTGGAAGGATTTGGTGTGTCAAAGGAGATGACTAGTCGAAACCTAATATGGGTTATTGGAAGGATGCATGTTCAAGTCGAATCTTATCCTTCATGGGGAGATATTGTTCAAGTGGAGACTTGGTGCTCAGGCTTAACAAAACATTGCCTCACATGTAGCTCTAGACTAATTGATGCAAGTACAGGAAACAATATCATGCGAGTTGACAGTGAGTTTGTGATGATTAATGAGAAAACGAGGAGGCTATCAAAAATCCCAGAGGAGATCAAAGCTAAAGGAGATCCTTATGTCAAGGATTACATTGATCCCCCTCTTACTGAGGATAAGCTCAGGAAATTACATAAACTTGATCAAGACAAAGCCGATTATATCCTTGGAGGAATTAAGCCTTTATGGTTCGACTTGGATCCCAATCAACATGTCAATAATGTCAAGTACATATGCTGGATTCTTGAGGGAACCCCGGAAGCAGTGAGGGAAAACTATGAACTGAGATCGATAACATTGGAGTACAGGAGAGAATGTGGGAGAGATAGTGTGTTGCAATCCCTCTCAGCTGCATCTGCTCAAGTTCCTGACGAATATCATCATTTACTTCGTCTGGAAAATGGCAAGGAAGTTGCAAGAGCTAGAACCTCATGGACGAAGTCCAGTAAATTACTACGTAATTAGTGAACAAGTATAATACATCTTTTTTTCACCACGAGTTGATAACGAACTTGTTACAACCATATCATATCATCAACGGGTTTCTGAATCATGTGACATTGATCAGAGATATAAAGTACGGGTTTTAGGACCACCCCTCCCCCTACCTACATTTACTTCATGTACTCGACTTTGTTGCATTTCTTAGTTTCAGATTAAGGCCAAACTCAACCTGACCTGCCTTGTGAGTTTGTAACTTGTGAAAACTTATTTGTGTTACTAGATTGGTTATTCCAACGCTCCACTATTCATATTAAAACTCTGCTACACCAAAAACCATGGAAATTTTGACACAATTTCGAGTCAGAAAGTCTAACCCTAGAGCGTACATGCACCTACCTGTGTCCAACATGCATGATTACT ATGCCTTCAATTTCAGCTGTTTTATCAAACTTTCCATTAACGATCCCTCCATCAAAGTTATTCAGAGGACGATCAACCGACAATAATGCCACACTTCTCTACAACTTTGGACCAAATTTACCTTCTCAAGTTACAAGATTGCAAGTTAAGCTTGATAATGTTCAAGACCCTTTGAAGCTCAACAATTTCACCAAGACTGAACCCGAAAAAAGAAGGTATACACTAGATGAGTACGTAGTGGGTCAAAAATTCCTGGTTAGACTTTATGAGCTTGATATCCATCAAAAAGCATCATTGGAGGCTTTGCTTAATTATACACAGGAAACGGGGGTGAACCTATTCCAAAGTTCGGGACTAGTAGTGGAAGGATTTGGTGTGTCAAAGGAGATGACTAGTCGAAACCTAATATGGGTTATTGGAAGGATGCATGTTCAAGTCGAATCTTATCCTTCATGGGGAGATATTGTTCAAGTGGAGACTTGGTGCTCAGGCTTAACAAAACATTGCCTCACATGTAGCTCTAGACTAATTGATGCAAGTACAGGAAACAATATCATGCGAGTTGACAGTGAGTTTGTGATGATTAATGAGAAAACGAGGAGGCTATCAAAAATCCCAGAGGAGATCAAAGCTAAAGGAGATCCTTATGTCAAGGATTACATTGATCCCCCTCTTACTGAGGATAAGCTCAGGAAATTACATAAACTTGATCAAGACAAAGCCGATTATATCCTTGGAGGAATTAAGCCTTTATGGTTCGACTTGGATCCCAATCAACATGTCAATAATGTCAAGTACATATGCTGGATTCTTGAGGGAACCCCGGAAGCAGTGAGGGAAAACTATGAACTGAGATCGATAACATTGGAGTACAGGAGAGAATGTGGGAGAGATAGTGTGTTGCAATCCCTCTCAGCTGCATCTGCTCAAGTTCCTGACGAATATCATCATTTACTTCGTCTGGAAAATGGCAAGGAAGTTGCAAGAGCTAGAACCTCATGGACGAAGTCCAGTAAATTACTACGTAATTAG MPSISAVLSNFPLTIPPSKLFRGRSTDNNATLLYNFGPNLPSQVTRLQVKLDNVQDPLKLNNFTKTEPEKRRYTLDEYVVGQKFLVRLYELDIHQKASLEALLNYTQETGVNLFQSSGLVVEGFGVSKEMTSRNLIWVIGRMHVQVESYPSWGDIVQVETWCSGLTKHCLTCSSRLIDASTGNNIMRVDSEFVMINEKTRRLSKIPEEIKAKGDPYVKDYIDPPLTEDKLRKLHKLDQDKADYILGGIKPLWFDLDPNQHVNNVKYICWILEGTPEAVRENYELRSITLEYRRECGRDSVLQSLSAASAQVPDEYHHLLRLENGKEVARARTSWTKSSKLLRN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20415.1 vs. NCBI nr
Match: gi|902228042|gb|KNA20945.1| (hypothetical protein SOVF_047730 [Spinacia oleracea]) HSP 1 Score: 695.7 bits (1794), Expect = 4.200e-197 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 1
BLAST of Spo20415.1 vs. NCBI nr
Match: gi|870853668|gb|KMT05549.1| (hypothetical protein BVRB_7g176720 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 504.2 bits (1297), Expect = 1.800e-139 Identity = 259/349 (74.21%), Postives = 285/349 (81.66%), Query Frame = 1
BLAST of Spo20415.1 vs. NCBI nr
Match: gi|731349623|ref|XP_010686088.1| (PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 499.2 bits (1284), Expect = 5.700e-138 Identity = 255/334 (76.35%), Postives = 278/334 (83.23%), Query Frame = 1
BLAST of Spo20415.1 vs. NCBI nr
Match: gi|12004035|gb|AAG43857.1|AF213476_1 (acyl-ACP thioesterase [Iris germanica]) HSP 1 Score: 267.3 bits (682), Expect = 3.700e-68 Identity = 131/260 (50.38%), Postives = 176/260 (67.69%), Query Frame = 1
BLAST of Spo20415.1 vs. NCBI nr
Match: gi|470101870|ref|XP_004287391.1| (PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic [Fragaria vesca subsp. vesca]) HSP 1 Score: 264.2 bits (674), Expect = 3.100e-67 Identity = 134/270 (49.63%), Postives = 181/270 (67.04%), Query Frame = 1
BLAST of Spo20415.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RN49_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_047730 PE=4 SV=1) HSP 1 Score: 695.7 bits (1794), Expect = 2.900e-197 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 1
BLAST of Spo20415.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZU2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176720 PE=4 SV=1) HSP 1 Score: 504.2 bits (1297), Expect = 1.200e-139 Identity = 259/349 (74.21%), Postives = 285/349 (81.66%), Query Frame = 1
BLAST of Spo20415.1 vs. UniProtKB/TrEMBL
Match: Q9FQY1_IRIGE (Acyl-ACP thioesterase OS=Iris germanica GN=FatB1 PE=2 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 2.600e-68 Identity = 131/260 (50.38%), Postives = 176/260 (67.69%), Query Frame = 1
BLAST of Spo20415.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NBT4_GOSAR (Myristoyl-acyl carrier thioesterase, chloroplastic OS=Gossypium arboreum GN=F383_08891 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 4.800e-67 Identity = 137/271 (50.55%), Postives = 184/271 (67.90%), Query Frame = 1
BLAST of Spo20415.1 vs. UniProtKB/TrEMBL
Match: A0PGT6_9ERIC (Chloroplast palmitoyl/oleoyl specific acyl-acyl carrier protein thioesterase (Fragment) OS=Diploknema butyracea GN=FatB PE=2 SV=1) HSP 1 Score: 262.3 bits (669), Expect = 8.200e-67 Identity = 131/267 (49.06%), Postives = 177/267 (66.29%), Query Frame = 1
BLAST of Spo20415.1 vs. ExPASy Swiss-Prot
Match: FATB_ARATH (Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Arabidopsis thaliana GN=FATB PE=1 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 1.200e-66 Identity = 133/275 (48.36%), Postives = 180/275 (65.45%), Query Frame = 1
BLAST of Spo20415.1 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 2.900e-65 Identity = 129/267 (48.31%), Postives = 175/267 (65.54%), Query Frame = 1
BLAST of Spo20415.1 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 2.500e-64 Identity = 127/262 (48.47%), Postives = 172/262 (65.65%), Query Frame = 1
BLAST of Spo20415.1 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 3.800e-57 Identity = 113/265 (42.64%), Postives = 166/265 (62.64%), Query Frame = 1
BLAST of Spo20415.1 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=1 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 5.000e-57 Identity = 114/259 (44.02%), Postives = 163/259 (62.93%), Query Frame = 1
BLAST of Spo20415.1 vs. TAIR (Arabidopsis)
Match: AT1G08510.1 (fatty acyl-ACP thioesterases B) HSP 1 Score: 255.0 bits (650), Expect = 6.600e-68 Identity = 133/275 (48.36%), Postives = 180/275 (65.45%), Query Frame = 1
BLAST of Spo20415.1 vs. TAIR (Arabidopsis)
Match: AT4G13050.1 (Acyl-ACP thioesterase) HSP 1 Score: 194.1 bits (492), Expect = 1.400e-49 Identity = 108/293 (36.86%), Postives = 164/293 (55.97%), Query Frame = 1
BLAST of Spo20415.1 vs. TAIR (Arabidopsis)
Match: AT3G25110.1 (fatA acyl-ACP thioesterase) HSP 1 Score: 189.9 bits (481), Expect = 2.600e-48 Identity = 110/307 (35.83%), Postives = 168/307 (54.72%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20415.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20415.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20415.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo20415.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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