Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTCCATAACACTCCGTTATATAAGGAGAACATTCAAACTTAGCTCTATCATAATTCTCTAATCGCTGGCCATATATATTCATCAACTAGATCATTTAATTTTCTTCAACTACGCCAAACTTAAGTTATATACTTGGGATTCATAACTATACACACCACTTCTAATTAGAGAGTGTATAGATCGATGGCGAAAGTTCACCCTCATCTCTTATCTTCTCCTTCATCGTCGCGTTCGTCCGGAGAAACCACCGAGAAATTTACAGTTTGGATGAAATCTCTAGTCCTTAACGGCAATGGTTGCACCATCTATGATTCTACGGGTAATATCGTGTATCGTATCGATAATTACGATACTAAGTGTAGTAGCCAAGTCTTGTTAATGGATCTTAAGGGAAAAGTCTTAAGCACCTTGATTCGTAAGGTAATTAATTATATACACTATATACTATTGTTTTTAGGGCATACACCGTCCCTTAAAAATATGTAGAGCATGTTTTCTTAATAATTTTGTTTTGAATTGTATTTGCAGAAGTTGAGAGTTAAAGAACATTGGAATGGGTACAAAAATGATAGAGTACTTAAAAATGAGAGGCCATGGTTTAAAGTAAACAAGATAAGCAAGGTTTTTAACAAGAAAGGAAAAGGTTTTTCTTGTCAAGTTACAATCGAAGGTGACGAATCTCGAGCATTATCGTGTTTTACAATCCAAGGATGTGCTCAAAAATCAGAATTCGAGATTATTCGAGGCGATGGCCTTGTGGTCGCACAGGTATAAATTTGTTACCTGGCTACCTTGAATATAATTATATTCCTTCCGTTCCATAATGATGTTTCAATTCTGATGAATTTGCGTTGTCAATGTCATGGATATTGTTGTAGGTTAAGAGAAAGAAATCGACAAGCGGAATAATGTTGGGAAATGATGTATTAAGCTTGGAAATGGAGCCTAAAATGGAACAATCCTTCATAATATCACTTGTTGTAGTTCATGGTTTAATTTCTCATAAACTTTGACCCTTTCAAAAATGACATGACATTTTTTTTGTAAACGCTTCTTCAATGTTCATGTAAGAAGAGGTGTGTTTACTTATTCGAGGAGGCGCTGTTCGAGTGTTCGAGCATCGATAACAACATTCAATGAGTGTTAAGCTATATATCCCTCGACGTGTAGATATCAGATATGTTTTAGTGAATTGAAGTTTTTTGTAGGAAGGGATCCATTTTGTTCTTGATAAATCATTCATATATGTATACAATTTTTTTTTCCCTGATTGTTCTGGGTTTGTGTATAATCCTGTTTACATTAATGATAATAACACTTGGACTTGATCCTTTTTTCAATCAGTTTCAAATTATACACAGATTTCATTGAGCATTATTATTGTGTTGTGTTGTCATGTACCTAACTAACAATTGCAATTTGTTTATCGTTGATTGATTAAAGGGTATGTTCGA TGTCCATAACACTCCGTTATATAAGGAGAACATTCAAACTTAGCTCTATCATAATTCTCTAATCGCTGGCCATATATATTCATCAACTAGATCATTTAATTTTCTTCAACTACGCCAAACTTAAGTTATATACTTGGGATTCATAACTATACACACCACTTCTAATTAGAGAGTGTATAGATCGATGGCGAAAGTTCACCCTCATCTCTTATCTTCTCCTTCATCGTCGCGTTCGTCCGGAGAAACCACCGAGAAATTTACAGTTTGGATGAAATCTCTAGTCCTTAACGGCAATGGTTGCACCATCTATGATTCTACGGGTAATATCGTGTATCGTATCGATAATTACGATACTAAGTGTAGTAGCCAAGTCTTGTTAATGGATCTTAAGGGAAAAGTCTTAAGCACCTTGATTCGTAAGAAGTTGAGAGTTAAAGAACATTGGAATGGGTACAAAAATGATAGAGTACTTAAAAATGAGAGGCCATGGTTTAAAGTAAACAAGATAAGCAAGGTTTTTAACAAGAAAGGAAAAGGTTTTTCTTGTCAAGTTACAATCGAAGGTGACGAATCTCGAGCATTATCGTGTTTTACAATCCAAGGATGTGCTCAAAAATCAGAATTCGAGATTATTCGAGGCGATGGCCTTGTGGTCGCACAGGTTAAGAGAAAGAAATCGACAAGCGGAATAATGTTGGGAAATGATGTATTAAGCTTGGAAATGGAGCCTAAAATGGAACAATCCTTCATAATATCACTTGTTGTAGTTCATGGTTTAATTTCTCATAAACTTTGACCCTTTCAAAAATGACATGACATTTTTTTTGTAAACGCTTCTTCAATGTTCATGTAAGAAGAGGTGTGTTTACTTATTCGAGGAGGCGCTGTTCGAGTGTTCGAGCATCGATAACAACATTCAATGAGTGTTAAGCTATATATCCCTCGACGTGTAGATATCAGATATGTTTTAGTGAATTGAAGTTTTTTGTAGGAAGGGATCCATTTTGTTCTTGATAAATCATTCATATATGTATACAATTTTTTTTTCCCTGATTGTTCTGGGTTTGTGTATAATCCTGTTTACATTAATGATAATAACACTTGGACTTGATCCTTTTTTCAATCAGTTTCAAATTATACACAGATTTCATTGAGCATTATTATTGTGTTGTGTTGTCATGTACCTAACTAACAATTGCAATTTGTTTATCGTTGATTGATTAAAGGGTATGTTCGA ATGGCGAAAGTTCACCCTCATCTCTTATCTTCTCCTTCATCGTCGCGTTCGTCCGGAGAAACCACCGAGAAATTTACAGTTTGGATGAAATCTCTAGTCCTTAACGGCAATGGTTGCACCATCTATGATTCTACGGGTAATATCGTGTATCGTATCGATAATTACGATACTAAGTGTAGTAGCCAAGTCTTGTTAATGGATCTTAAGGGAAAAGTCTTAAGCACCTTGATTCGTAAGAAGTTGAGAGTTAAAGAACATTGGAATGGGTACAAAAATGATAGAGTACTTAAAAATGAGAGGCCATGGTTTAAAGTAAACAAGATAAGCAAGGTTTTTAACAAGAAAGGAAAAGGTTTTTCTTGTCAAGTTACAATCGAAGGTGACGAATCTCGAGCATTATCGTGTTTTACAATCCAAGGATGTGCTCAAAAATCAGAATTCGAGATTATTCGAGGCGATGGCCTTGTGGTCGCACAGGTTAAGAGAAAGAAATCGACAAGCGGAATAATGTTGGGAAATGATGTATTAAGCTTGGAAATGGAGCCTAAAATGGAACAATCCTTCATAATATCACTTGTTGTAGTTCATGGTTTAATTTCTCATAAACTTTGA MAKVHPHLLSSPSSSRSSGETTEKFTVWMKSLVLNGNGCTIYDSTGNIVYRIDNYDTKCSSQVLLMDLKGKVLSTLIRKKLRVKEHWNGYKNDRVLKNERPWFKVNKISKVFNKKGKGFSCQVTIEGDESRALSCFTIQGCAQKSEFEIIRGDGLVVAQVKRKKSTSGIMLGNDVLSLEMEPKMEQSFIISLVVVHGLISHKL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18783.1 vs. NCBI nr
Match: gi|902224808|gb|KNA19881.1| (hypothetical protein SOVF_057090 [Spinacia oleracea]) HSP 1 Score: 403.3 bits (1035), Expect = 2.500e-109 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1
BLAST of Spo18783.1 vs. NCBI nr
Match: gi|731378804|ref|XP_010668277.1| (PREDICTED: protein LURP-one-related 11-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 305.4 bits (781), Expect = 7.200e-80 Identity = 148/201 (73.63%), Postives = 177/201 (88.06%), Query Frame = 1
BLAST of Spo18783.1 vs. NCBI nr
Match: gi|870860793|gb|KMT12101.1| (hypothetical protein BVRB_5g100540 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 298.1 bits (762), Expect = 1.100e-77 Identity = 153/204 (75.00%), Postives = 176/204 (86.27%), Query Frame = 1
BLAST of Spo18783.1 vs. NCBI nr
Match: gi|870840071|gb|KMS94760.1| (hypothetical protein BVRB_015550 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 270.4 bits (690), Expect = 2.600e-69 Identity = 131/175 (74.86%), Postives = 157/175 (89.71%), Query Frame = 1
BLAST of Spo18783.1 vs. NCBI nr
Match: gi|731331102|ref|XP_010676485.1| (PREDICTED: protein LURP-one-related 11-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 265.8 bits (678), Expect = 6.300e-68 Identity = 133/176 (75.57%), Postives = 155/176 (88.07%), Query Frame = 1
BLAST of Spo18783.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK37_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057090 PE=4 SV=1) HSP 1 Score: 403.3 bits (1035), Expect = 1.800e-109 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1
BLAST of Spo18783.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F850_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g100540 PE=4 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 8.000e-78 Identity = 153/204 (75.00%), Postives = 176/204 (86.27%), Query Frame = 1
BLAST of Spo18783.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DV93_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015550 PE=4 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 1.800e-69 Identity = 131/175 (74.86%), Postives = 157/175 (89.71%), Query Frame = 1
BLAST of Spo18783.1 vs. UniProtKB/TrEMBL
Match: D7TW17_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g03750 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 1.500e-47 Identity = 101/208 (48.56%), Postives = 146/208 (70.19%), Query Frame = 1
BLAST of Spo18783.1 vs. UniProtKB/TrEMBL
Match: F6HUD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g03730 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 7.500e-44 Identity = 99/206 (48.06%), Postives = 147/206 (71.36%), Query Frame = 1
BLAST of Spo18783.1 vs. ExPASy Swiss-Prot
Match: LOR11_ARATH (Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 9.500e-32 Identity = 81/207 (39.13%), Postives = 122/207 (58.94%), Query Frame = 1
BLAST of Spo18783.1 vs. ExPASy Swiss-Prot
Match: LOR2_ARATH (Protein LURP-one-related 2 OS=Arabidopsis thaliana GN=At1g53870 PE=2 SV=2) HSP 1 Score: 126.3 bits (316), Expect = 3.700e-28 Identity = 82/216 (37.96%), Postives = 124/216 (57.41%), Query Frame = 1
BLAST of Spo18783.1 vs. ExPASy Swiss-Prot
Match: LOR3_ARATH (Protein LURP-one-related 3 OS=Arabidopsis thaliana GN=At1g53890 PE=2 SV=2) HSP 1 Score: 126.3 bits (316), Expect = 3.700e-28 Identity = 82/216 (37.96%), Postives = 124/216 (57.41%), Query Frame = 1
BLAST of Spo18783.1 vs. ExPASy Swiss-Prot
Match: LOR4_ARATH (Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 3.500e-26 Identity = 79/200 (39.50%), Postives = 117/200 (58.50%), Query Frame = 1
BLAST of Spo18783.1 vs. ExPASy Swiss-Prot
Match: LOR12_ARATH (Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.400e-14 Identity = 54/173 (31.21%), Postives = 93/173 (53.76%), Query Frame = 1
BLAST of Spo18783.1 vs. TAIR (Arabidopsis)
Match: AT3G14260.1 (Protein of unknown function (DUF567)) HSP 1 Score: 138.3 bits (347), Expect = 5.400e-33 Identity = 81/207 (39.13%), Postives = 122/207 (58.94%), Query Frame = 1
BLAST of Spo18783.1 vs. TAIR (Arabidopsis)
Match: AT1G53870.1 (Protein of unknown function (DUF567)) HSP 1 Score: 126.3 bits (316), Expect = 2.100e-29 Identity = 82/216 (37.96%), Postives = 124/216 (57.41%), Query Frame = 1
BLAST of Spo18783.1 vs. TAIR (Arabidopsis)
Match: AT1G53880.1 (Eukaryotic translation initiation factor 2B (eIF-2B) family protein) HSP 1 Score: 120.9 bits (302), Expect = 8.900e-28 Identity = 74/193 (38.34%), Postives = 111/193 (57.51%), Query Frame = 1
BLAST of Spo18783.1 vs. TAIR (Arabidopsis)
Match: AT1G53900.1 (Eukaryotic translation initiation factor 2B (eIF-2B) family protein) HSP 1 Score: 120.9 bits (302), Expect = 8.900e-28 Identity = 74/193 (38.34%), Postives = 111/193 (57.51%), Query Frame = 1
BLAST of Spo18783.1 vs. TAIR (Arabidopsis)
Match: AT1G63410.1 (Protein of unknown function (DUF567)) HSP 1 Score: 115.9 bits (289), Expect = 2.800e-26 Identity = 76/198 (38.38%), Postives = 114/198 (57.58%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18783.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18783.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18783.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo18783.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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