Spo25988 (gene) | SpinachBase

Overview


Name	Spo25988
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ring finger protein, putative
Location	chr6 : 41175001 .. 41179197 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACGCTTTCTAAAACACTGTCGCAAACTCGCGAAGCTGTGAATACACTGGGAAAATTCTAGAAAGATTTGTGAGTCTGCAGTTGAAGGTGTAACGAATCAACGATGCTAAATCTCCCTGTCGTGGAGCCGCCGGCGCGGCAGATCACGCAGTGGTTGTGGTGGCGGAGACGGAAGCTATGGTTCTATCTTATTTCAACGAAGGTGTTTTTCTTTCTTAGTTATTTCCGCTATTATTGGTAGATTAACACCCAATTAGATGCTACTGTCATTTTTGAAGTGATTTGTTGATGTCCTAGATTTATTGGTGACAATTTGTTTGATAATTTGGTGAACCTGGGATGGGATGTGGTGAATTTTGCGGGTTAGGGTTTTGAATTTTAGTCATGGTGCAATGAATCAATCCCCAAATTGGGATTTTCATGTTCAAGAGACAACAGATGTATTTGCTTGAGCACCCTGATCAATTTTCAATAATGACTTACTCTATATATTTTTTTAATTATAAATTACCAGCCATTGTTTGGGGTTGAGGTCTTTGGGCAATTGAATTATTGATATTTGAATAGAATTTCAAATTTTCTTAAGGTTGAAGATGATGCTTATTTCTTTCGTTGTTCTTCATAGACTCTGTTTTAAGTTGCAATTGGTGATTTGGGTGGTCATTGTTCTTGGCAGCTTAAGGGCTGATTTCCAACAAATTAGGCTACTGGCATTCAAGCAATCTATTATTGTCGACGAAGATCTAAATCAGGCAGATGTTTTAAGAAATGTAAGAAACACTAATGCTTGTAAGTAATTTGATAAGATGATGGTTAAATGTCCTATGCTACAATTCAGTGGATTTATAACTTCTATTAGAGCATCTACAATGGTAAGCTAATTTCTAAATTAGCTTGTCATGCCATATAATATTTCAAGCTATTTCCCTTTCTAGCTAGTTAGTACCCTAGTGGTTAGCTACTAGCTTGATATTTAATGTAGTCATATTTGTCAATTAATATTTTAATTTAATTTAATTTAATATTATTTCATTGGCCAAGTTTTTTCAAGCAAATTAGCTTAAATAAGCTAATTTGCTTGGCCAAGCTAATTTATTATATCAACTCCAATGGTCAAGCTAGTAGCTTGGAATTTCTAAAAATTGCAAGCAAGTCCCTAGCTACAACCATTGGAGATGCTCTTAGTGCTTGAATACTTTTTTGACATGGGGTTCTAGAATGCAGTAGTCTGCGTCCTTCATTTTTTTTTTTTTTTTGGGATAATGTTTCGCCGAATCATGAATAAATTGTACGCAAACAAAAATCGTCAAACCTCACTACTAAATCGTACACAATTAGAAGTTTTTACTTTGTCTATTTTATTTGGTACTTATATTAAAAGCCTACTTCCACCTTCCTGTTGCAACCAAATCCTTAATCTCAGCAGAAAGAAAGAAAAAGAAAGGGTAAATGACTACCACCTCATTTCAAAATCATTTAGGCACTTCACTTATCACTTATCACTTATCACTTATCACTTAGCTTGTCAGTTGTTAGTTTGTCACCAAAGATTGCATGTATGCATCATGGATCACTGATGAATATGAAGGCATTAAGGCACAGCTAACTAATATACATAGGAAAGAAAATTGCTGAAAATTTCCATTTTACGCATCCTGTAAATTAAAGTTTGCCAACACTTACCCATTTCTAACAGCATAAAGCATATACATGCTATAAATTTATAAATACCATGCATACCTTTGTTTCTATCCACTAGTTGTGTGTTAAAATATTTTTCTCATCTTCCAGAATCCAACTTCTTCATAATTACACACTTTTGACGTTATGCCCATTCTTGATCACATCAGCCTCCTCTACATATTAGTATCGTAAAGATGGCTCTAATCTCTTCTGTGAGTCTTGTCCACGCTATTTTGTAAGTTTTCTTTTTATGTAGTATGGCTCAAGTTCTAATTTTGCATAATTTTTGAGTAATCTTCACATAGATGTTAATTGTTTATTTGATCTTTCAACCTTGTGTTAACTGCTACGTAGTAGTTATGGAGTAGTACTTGTTCCTCTAATTTGGTAGTCTGGTTTTCCTAACCAGTAAAATAGAATCATGGCTGTAATTGACTTAAGACTAATTATTCGAGCAGTCTCCATTGCATGTCTTCATGGTTCAATTACTTAGCTTCATCACAGCATGTGCAAAAACAAAGAAAAGAAAATGATGCATTTCTGTTTTTCCACTCTACACGACTCAGTAAACCATGTTAGATTCACTGTTGACTTCTTTCATGCTCATTCTGTGCACAAATTCAGGTGTCGTTATATGCTTGTCTATGTTAAGCTTGAATGTAATGAATGATGAACTGTTGGGGGAACGGGGGGCACCTGCACCGAGACTTAGGATATTTATAACATTATAACTTCTGGCGTGTTAAAATAAATGAGAGCTATTTGTCGAATGGATTATTATACTAGTCCTATAGTTTGAAACTTTGAATTAAGGCAGTAGGTACTATGTAGTACATGTTTATAACAGTTTTGAGGATAAGTGATAAGAGCATATGAGCATTGTTTGTGTGCTTCTTCAAGTAATCAATCTTTTCAGATCAATTTGATTATTTTGTCCCAATTTTTTTTTTACTTATTATAATAAATGACGTAGGCTTTGCATTTAGCGCCAACTTCATGAGTGTGTGTATAGACTTAAGCTTTAGAATCTGAAACCTTTATGAAAAAATTGTAACCCTTGGAAATAAATTCAGCCTATATTCAAATCTGGTGTGTAGACTCATGGTTTAGAATTTGATACCTTTGTGAAAAAAATTGTTGGAAATAAATTCATCCCACATCAAAATCTTGTTTTTACTTTGGTAAAAGAATACAAGAGCATTGCTATGTGATCAGTTCTTGCATTTCAATCTTCTTGCTTGATTTTTGTTCAAAGTTGACAAATTTCTTGGCTTTTTCTTAAATGCCCCAAGGACTGAACTCAGTATTTCACTGTAGCAGTTGCTACTAATTTTATGCATGTTACAATTTTGTTTCATGCAAAACCGATTGCATTATTTGGAAGTTTGAACACTAATTTGGATGAAAAACAGCTGGTATCCTGATGATGGTTCTGCTGTTGAAGTTCTTAGAGTCGATTTCTCATGTTAGATTAAGATTCCAGTTTACAATATCTCATCCATGATTGCTTAAGCTAGCCTTGAAACTTTTGAAAGCCAATAAACTAATGAACGGGGACTTGTTAATATAGGGTGTTAAAAATATGGGGAGTGATTTGTCGATCAAATTCTGATATTTGGTTTTGCCAATAGTTTGAAGTCAGACAAGTAAGTTAGGGCGGTTTTGTGAATATAATCTCTGAAGATGTTAAATAACTGCATTAAAGTCCTACAATGAATATTTATGCATAATGCAGAAGATTTATCTATGCATTGCACATCATGTGGTGTTTCATCCCTTATAAACTGACATTTATGCTGAATTAAGCGATGTAAAAGAAAACCCTAGCTTAGCTTCACAGTAACAATGATCAGTAACTTTATTAGATTTCAATGTTTTGATACAGGTTTGTTATTGTATCAAGTCTACTGGCACAACTTGGACTCTCCATGGATGATGGTGGTGGGCATAATACCTTCACACTTCATGGAATAGATAAATGGATCATCCAAGTATCACTAATATTAGGTAGTATTCTAACACTGGTTCTTATTTTTTTTATTAGACGTTTTTGCAATAAAAGGCAACAACCTACACCAAGTATCCAACTCCCTAATCTTCCCCCGTCCCAAGTGCCTGAAACTTCTACCAACCCCTCTAATACTCTTCCAGAAACCTATGTCTTATGTAGATTACCGGAAGAGATTTATAAGCGTTTTCCGGTAGATACATATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATTTGTAATTTTTCTTTTGTTGATGGGGAGGAGCTGTGCATCCTTCCTGTTTGCCGCCATGTTTTTCATTCTCACTGTACTAGCTCATGGTTTTTAAACCATGATTGTCGTTGTACATTGTGTCGTCATGATTATTTTGACGGTTTTAGTGATGACCAATTAGTATAGTGTAAAAAGAGTTATTTTTGTTGTACTCTGTACATGCATAAGTAAATTTTATCATTTTAATAAATCATATTTATCGACTCTGTGTGATA

mRNA sequence

AAAACGCTTTCTAAAACACTGTCGCAAACTCGCGAAGCTGTGAATACACTGGGAAAATTCTAGAAAGATTTGTGAGTCTGCAGTTGAAGGTGTAACGAATCAACGATGCTAAATCTCCCTGTCGTGGAGCCGCCGGCGCGGCAGATCACGCAGTGGTTGTGGTGGCGGAGACGGAAGCTATGGTTCTATCTTATTTCAACGAAGCTTAAGGGCTGATTTCCAACAAATTAGGCTACTGGCATTCAAGCAATCTATTATTGTCGACGAAGATCTAAATCAGGCAGATGTTTTAAGAAATAATCCAACTTCTTCATAATTACACACTTTTGACGTTATGCCCATTCTTGATCACATCAGCCTCCTCTACATATTAGTATCGTAAAGATGGCTCTAATCTCTTCTGTGAGTCTTGTCCACGCTATTTTGTTTGTTATTGTATCAAGTCTACTGGCACAACTTGGACTCTCCATGGATGATGGTGGTGGGCATAATACCTTCACACTTCATGGAATAGATAAATGGATCATCCAAGTATCACTAATATTAGGTAGTATTCTAACACTGGTTCTTATTTTTTTTATTAGACGTTTTTGCAATAAAAGGCAACAACCTACACCAAGTATCCAACTCCCTAATCTTCCCCCGTCCCAAGTGCCTGAAACTTCTACCAACCCCTCTAATACTCTTCCAGAAACCTATGTCTTATGTAGATTACCGGAAGAGATTTATAAGCGTTTTCCGGTAGATACATATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATTTGTAATTTTTCTTTTGTTGATGGGGAGGAGCTGTGCATCCTTCCTGTTTGCCGCCATGTTTTTCATTCTCACTGTACTAGCTCATGGTTTTTAAACCATGATTGTCGTTGTACATTGTGTCGTCATGATTATTTTGACGGTTTTAGTGATGACCAATTAGTATAGTGTAAAAAGAGTTATTTTTGTTGTACTCTGTACATGCATAAGTAAATTTTATCATTTTAATAAATCATATTTATCGACTCTGTGTGATA

Coding sequence (CDS)

ATGGCTCTAATCTCTTCTGTGAGTCTTGTCCACGCTATTTTGTTTGTTATTGTATCAAGTCTACTGGCACAACTTGGACTCTCCATGGATGATGGTGGTGGGCATAATACCTTCACACTTCATGGAATAGATAAATGGATCATCCAAGTATCACTAATATTAGGTAGTATTCTAACACTGGTTCTTATTTTTTTTATTAGACGTTTTTGCAATAAAAGGCAACAACCTACACCAAGTATCCAACTCCCTAATCTTCCCCCGTCCCAAGTGCCTGAAACTTCTACCAACCCCTCTAATACTCTTCCAGAAACCTATGTCTTATGTAGATTACCGGAAGAGATTTATAAGCGTTTTCCGGTAGATACATATTCAACTGAACGTTGTAATGACTTCAGTCATATAGATTGTATGATTTGTAATTTTTCTTTTGTTGATGGGGAGGAGCTGTGCATCCTTCCTGTTTGCCGCCATGTTTTTCATTCTCACTGTACTAGCTCATGGTTTTTAAACCATGATTGTCGTTGTACATTGTGTCGTCATGATTATTTTGACGGTTTTAGTGATGACCAATTAGTATAG

Protein sequence

MALISSVSLVHAILFVIVSSLLAQLGLSMDDGGGHNTFTLHGIDKWIIQVSLILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRLPEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRCTLCRHDYFDGFSDDQLV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25988.1	Spo25988.1	mRNA

Homology

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BLAST of Spo25988.1 vs. NCBI nr
Match: gi|1009121380|ref|XP_015877424.1| (PREDICTED: RING-H2 finger protein ATL66-like [Ziziphus jujuba])

HSP 1 Score: 70.9 bits (172), Expect = 2.800e-9
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 1

		  
Query: 37  TFTLHGIDKWIIQVSLILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTN 96
           +F +HG   + I V LIL  +L L LIF   R+  +R   TP+        + +   ST 
Sbjct: 59  SFEVHGRTLFFILVLLIL--LLILTLIFLYARWACRRHHLTPN-------NNSISAASTP 118

Query: 97  PSNTLPETYVLCRLPEEIYKRFP--------VDTYSTERCNDFSHI-DCMICNFSFVDGE 156
           P N    +  +  LP  ++K  P        V     E+  D + + +C IC  +F DG+
Sbjct: 119 PRNQGLGSDAIRGLPIVLHKSLPSSCSGPGMVKEQGQEQVEDAAAVAECCICLGAFADGD 178

Query: 157 ELCILPVCRHVFHSHCTSSWFLNHDCRCTLCR 180
           ++ +LP C H +H HC  +W +NH   C LCR
Sbjct: 179 KVKVLPPCNHCYHPHCVDAWLINHS-NCPLCR 200

[Close]

BLAST of Spo25988.1 vs. NCBI nr
Match: gi|1009121366|ref|XP_015877417.1| (PREDICTED: RING-H2 finger protein ATL66-like [Ziziphus jujuba])

HSP 1 Score: 70.9 bits (172), Expect = 2.800e-9
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 1

		  
Query: 37  TFTLHGIDKWIIQVSLILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTN 96
           +F +HG   + I V LIL  +L L LIF   R+  +R   TP+        + +   ST 
Sbjct: 19  SFEVHGRTLFFILVLLIL--LLILTLIFLYARWACRRHHLTPN-------NNSISAASTP 78

Query: 97  PSNTLPETYVLCRLPEEIYKRFP--------VDTYSTERCNDFSHI-DCMICNFSFVDGE 156
           P N    +  +  LP  ++K  P        V     E+  D + + +C IC  +F DG+
Sbjct: 79  PRNQGLGSDAIRGLPIVLHKSLPSSCSGPGMVKEQGQEQVEDAAAVAECCICLGAFADGD 138

Query: 157 ELCILPVCRHVFHSHCTSSWFLNHDCRCTLCR 180
           ++ +LP C H +H HC  +W +NH   C LCR
Sbjct: 139 KVKVLPPCNHCYHPHCVDAWLINHS-NCPLCR 160

[Close]

BLAST of Spo25988.1 vs. NCBI nr
Match: gi|571507468|ref|XP_006595858.1| (PREDICTED: RING-H2 finger protein ATL66-like [Glycine max])

HSP 1 Score: 69.3 bits (168), Expect = 8.200e-9
Identity = 44/130 (33.85%), Postives = 60/130 (46.15%), Query Frame = 1

		  
Query: 52  LILGSILTL--VLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCR 111
           ++L SI+ L   L  F RR C +R      + LP+  P         P NT  ++  + R
Sbjct: 33  IVLFSIILLFTALFVFARRICRRRHHHHNGLLLPDAVPP--------PQNTGLDSAAIKR 92

Query: 112 LPEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFL 171
           LP  ++ R          CN  +  +C IC  +F DGE+L +LP C H FH  C   W  
Sbjct: 93  LPIVLHPR----------CNRVAEAECCICLGAFADGEKLKVLPGCDHSFHCECVDKWLT 143

Query: 172 NHDCRCTLCR 180
           NH   C LCR
Sbjct: 153 NHS-NCPLCR 143

[Close]

BLAST of Spo25988.1 vs. NCBI nr
Match: gi|571446647|ref|XP_006577152.1| (PREDICTED: RING-H2 finger protein ATL5-like [Glycine max])

HSP 1 Score: 67.0 bits (162), Expect = 4.100e-8
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1

		  
Query: 53  ILGSILTLVLIFF--IRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRL 112
           IL  IL +++IFF    RFC +R++   S  LP         T+++ + +L +      L
Sbjct: 24  ILLFILIIIIIFFHTFVRFCRRRRRRLFSRSLP---------TNSSAAASLDDPC----L 83

Query: 113 PEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLN 172
              + K  P  T+S          DC +C   F DG+E  +LP C+H FH+HC  +WF +
Sbjct: 84  DPSVIKSLPTFTFSAATHRSLQ--DCAVCLSEFADGDEGRVLPNCKHAFHAHCIDTWFGS 136

Query: 173 HDCRCTLCR 180
           H  +C LCR
Sbjct: 144 HS-KCPLCR 136

[Close]

BLAST of Spo25988.1 vs. NCBI nr
Match: gi|645272342|ref|XP_008241349.1| (PREDICTED: RING-H2 finger protein ATL52-like [Prunus mume])

HSP 1 Score: 66.6 bits (161), Expect = 5.300e-8
Identity = 43/136 (31.62%), Postives = 67/136 (49.26%), Query Frame = 1

		  
Query: 47  IIQVSLILGSILTLVLIFFIR-RFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETY 106
           +I +  I+ + L +V   FI  +FC +R+Q    IQL      Q P + +N         
Sbjct: 22  LISLGGIVSTTLAIVAYHFIVVKFCLRRRQRLMQIQLQASLSRQPPISQSNG-------- 81

Query: 107 VLCRLPEEIYKRFPVDTYSTERCNDF--SHIDCMICNFSFVDGEELCILPVCRHVFHSHC 166
               + E++    P+ +YST+ C  F     +C+IC     DG+ + +LP C+HVFH+ C
Sbjct: 82  ----VDEKVLSSIPILSYSTKNCELFRVDQSECVICLGELEDGDMVRLLPNCKHVFHNPC 141

Query: 167 TSSWFLNHDCRCTLCR 180
              WFL H   C +CR
Sbjct: 142 IDKWFLGH-TNCPVCR 144

[Close]

BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: I1M7S0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G058000 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.700e-9
Identity = 44/130 (33.85%), Postives = 60/130 (46.15%), Query Frame = 1

		  
Query: 52  LILGSILTL--VLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCR 111
           ++L SI+ L   L  F RR C +R      + LP+  P         P NT  ++  + R
Sbjct: 33  IVLFSIILLFTALFVFARRICRRRHHHHNGLLLPDAVPP--------PQNTGLDSAAIKR 92

Query: 112 LPEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFL 171
           LP  ++ R          CN  +  +C IC  +F DGE+L +LP C H FH  C   W  
Sbjct: 93  LPIVLHPR----------CNRVAEAECCICLGAFADGEKLKVLPGCDHSFHCECVDKWLT 143

Query: 172 NHDCRCTLCR 180
           NH   C LCR
Sbjct: 153 NHS-NCPLCR 143

[Close]

BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: I1JQN2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G215500 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.800e-8
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1

		  
Query: 53  ILGSILTLVLIFF--IRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRL 112
           IL  IL +++IFF    RFC +R++   S  LP         T+++ + +L +      L
Sbjct: 24  ILLFILIIIIIFFHTFVRFCRRRRRRLFSRSLP---------TNSSAAASLDDPC----L 83

Query: 113 PEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLN 172
              + K  P  T+S          DC +C   F DG+E  +LP C+H FH+HC  +WF +
Sbjct: 84  DPSVIKSLPTFTFSAATHRSLQ--DCAVCLSEFADGDEGRVLPNCKHAFHAHCIDTWFGS 136

Query: 173 HDCRCTLCR 180
           H  +C LCR
Sbjct: 144 HS-KCPLCR 136

[Close]

BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: B4FM78_MAIZE (Uncharacterized protein OS=Zea mays GN=LOC100217255 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.100e-7
Identity = 50/184 (27.17%), Postives = 79/184 (42.93%), Query Frame = 1

		  
Query: 12  AILFVIVSSLLAQLGL---SMDDGGGHNTFTLHGIDKWIIQVSLILGSILTLVLIFFIRR 71
           A+LF+++ S  A+  L   S +   GH++ T  G     + V + L S   ++ +F I  
Sbjct: 11  AVLFLVLLSTAARPSLAQPSNNSTSGHHSRTAGGFTPTTVIVLVALVSAFVVLTLFSI-- 70

Query: 72  FCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTL-----------PETYVLCRLPEEIYKR 131
           + N+     P  Q P+ P    P+   + +++            PE      L +E    
Sbjct: 71  YINRCAPTRPPPQRPSRPAPAPPDHHHHQASSATGGGGGGGVLHPERRARAGLDKEAVVS 130

Query: 132 FPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRCTL 182
           FP   Y   +      ++C +C  +F D +EL +LP C HVFH  C   W L     C L
Sbjct: 131 FPTAVYGDVKARVAGPLECAVCLAAFEDRDELRVLPACCHVFHPDCIDPW-LAGAATCPL 190

[Close]

BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: R0G1C1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025254mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.100e-7
Identity = 32/78 (41.03%), Postives = 40/78 (51.28%), Query Frame = 1

		  
Query: 108 CRLPEEIYKRFPVDTYST--ERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTS 167
           C L E I   FP   YS   ER       +C +C   F D E L ++P+C HVFHS+C +
Sbjct: 66  CGLSEAIINSFPTFLYSEVKERRLGIGGAECAVCLCEFEDDETLRLIPICSHVFHSNCVT 125

Query: 168 SWFLNHDCRCTLCRHDYF 184
            W  +H   C LCR D F
Sbjct: 126 VWLSDHS-TCPLCRVDLF 142

[Close]

BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Match: A0A0D3CKA3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.300e-7
Identity = 29/90 (32.22%), Postives = 47/90 (52.22%), Query Frame = 1

		  
Query: 107 LCRLPEEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSS 166
           L  +   I +  PV  ++T+   D   I C++C     DG++  +LP C H FH+HC  S
Sbjct: 56  LASINPSILRSIPVVDFNTQGFKD--GIQCVVCLSELADGDKATVLPTCNHWFHAHCIDS 115

Query: 167 WFLNHDCRCTLCRH------DYFDGFSDDQ 191
           WF +H   C +CR+      +++ GF  D+
Sbjct: 116 WFQSHS-TCPVCRNIVGLAKNHYSGFEPDE 142

[Close]

BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.400e-7
Identity = 43/129 (33.33%), Postives = 57/129 (44.19%), Query Frame = 1

		  
Query: 52  LILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRLP 111
           LI G I  L L + IR  C  R+     I  P +     P +S+N             + 
Sbjct: 65  LICGIICCLGLHYIIR--CAFRRSSRFMISEP-ISSLSTPRSSSNKG-----------IK 124

Query: 112 EEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNH 171
           ++  + FPV +YS E        +C+IC   FV GE+L +LP C H FH  C   W L H
Sbjct: 125 KKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKW-LQH 178

Query: 172 DCRCTLCRH 181
              C  CRH
Sbjct: 185 HLTCPKCRH 178

[Close]

BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.400e-7
Identity = 27/69 (39.13%), Postives = 36/69 (52.17%), Query Frame = 1

		  
Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           K  PVD+YS E        +C+IC   FV+GE + +LP C H FH  C  +W L+H   C
Sbjct: 95  KVIPVDSYSPEL--KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHS-SC 154

Query: 176 TLCRHDYFD 185
             CR    +
Sbjct: 155 PTCRQSLLE 160

[Close]

BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.500e-7
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1

		  
Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           K+FPV  Y +      +  +C IC   F DGE + +LP C H FH  C  +W ++H   C
Sbjct: 86  KKFPVAEYGSGEVK-IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SC 145

Query: 176 TLCRHDYFD 185
             CRH   +
Sbjct: 146 PNCRHSLIE 152

[Close]

BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.300e-6
Identity = 26/65 (40.00%), Postives = 33/65 (50.77%), Query Frame = 1

		  
Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           + FPV +YS E        +C+IC   FV GE++ +LP C H FH  C   W   H   C
Sbjct: 116 RMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH-LTC 175

Query: 176 TLCRH 181
             CRH
Sbjct: 176 PKCRH 179

[Close]

BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Match: ATL49_ARATH (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana GN=ATL49 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-6
Identity = 26/76 (34.21%), Postives = 36/76 (47.37%), Query Frame = 1

		  
Query: 112 EEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNH 171
           + +    PV  Y +      S  DC +C   F   ++L +LP C H FH  C  +W L+H
Sbjct: 102 QSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSH 161

Query: 172 DCRCTLCRHDYFDGFS 188
              C LCR +   GFS
Sbjct: 162 S-TCPLCRSNLLSGFS 176

[Close]

BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT1G49210.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.900e-8
Identity = 43/129 (33.33%), Postives = 57/129 (44.19%), Query Frame = 1

		  
Query: 52  LILGSILTLVLIFFIRRFCNKRQQPTPSIQLPNLPPSQVPETSTNPSNTLPETYVLCRLP 111
           LI G I  L L + IR  C  R+     I  P +     P +S+N             + 
Sbjct: 65  LICGIICCLGLHYIIR--CAFRRSSRFMISEP-ISSLSTPRSSSNKG-----------IK 124

Query: 112 EEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNH 171
           ++  + FPV +YS E        +C+IC   FV GE+L +LP C H FH  C   W L H
Sbjct: 125 KKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKW-LQH 178

Query: 172 DCRCTLCRH 181
              C  CRH
Sbjct: 185 HLTCPKCRH 178

[Close]

BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT5G05280.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.900e-8
Identity = 27/69 (39.13%), Postives = 36/69 (52.17%), Query Frame = 1

		  
Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           K  PVD+YS E        +C+IC   FV+GE + +LP C H FH  C  +W L+H   C
Sbjct: 95  KVIPVDSYSPEL--KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHS-SC 154

Query: 176 TLCRHDYFD 185
             CR    +
Sbjct: 155 PTCRQSLLE 160

[Close]

BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT5G01880.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.500e-8
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1

		  
Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           K+FPV  Y +      +  +C IC   F DGE + +LP C H FH  C  +W ++H   C
Sbjct: 86  KKFPVAEYGSGEVK-IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SC 145

Query: 176 TLCRHDYFD 185
             CRH   +
Sbjct: 146 PNCRHSLIE 152

[Close]

BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT1G49200.1 (RING/U-box superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 7.400e-8
Identity = 26/65 (40.00%), Postives = 33/65 (50.77%), Query Frame = 1

		  
Query: 116 KRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNHDCRC 175
           + FPV +YS E        +C+IC   FV GE++ +LP C H FH  C   W   H   C
Sbjct: 116 RMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQH-LTC 175

Query: 176 TLCRH 181
             CRH
Sbjct: 176 PKCRH 179

[Close]

BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Match: AT2G18650.1 (RING/U-box superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 9.600e-8
Identity = 26/76 (34.21%), Postives = 36/76 (47.37%), Query Frame = 1

		  
Query: 112 EEIYKRFPVDTYSTERCNDFSHIDCMICNFSFVDGEELCILPVCRHVFHSHCTSSWFLNH 171
           + +    PV  Y +      S  DC +C   F   ++L +LP C H FH  C  +W L+H
Sbjct: 102 QSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSH 161

Query: 172 DCRCTLCRHDYFDGFS 188
              C LCR +   GFS
Sbjct: 162 S-TCPLCRSNLLSGFS 176

The following BLAST results are available for this feature:

BLAST of Spo25988.1 vs. NCBI nr
BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
BLAST of Spo25988.1 vs. TAIR (Arabidopsis)

BLAST of Spo25988.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|1009121380\|ref\|XP_015877424.1\|	2.8e-9	31.5	PREDICTED: RING-H2 finger prot...	[more]
gi\|1009121366\|ref\|XP_015877417.1\|	2.8e-9	31.5	PREDICTED: RING-H2 finger prot...	[more]
gi\|571507468\|ref\|XP_006595858.1\|	8.2e-9	33.8	PREDICTED: RING-H2 finger prot...	[more]
gi\|571446647\|ref\|XP_006577152.1\|	4.1e-8	33.3	PREDICTED: RING-H2 finger prot...	[more]
gi\|645272342\|ref\|XP_008241349.1\|	5.3e-8	31.6	PREDICTED: RING-H2 finger prot...	[more]

BLAST of Spo25988.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
I1M7S0_SOYBN	5.7e-9	33.8	Uncharacterized protein OS=Gly...	[more]
I1JQN2_SOYBN	2.8e-8	33.3	Uncharacterized protein OS=Gly...	[more]
B4FM78_MAIZE	3.1e-7	27.1	Uncharacterized protein OS=Zea...	[more]
R0G1C1_9BRAS	3.1e-7	41.0	Uncharacterized protein OS=Cap...	[more]
A0A0D3CKA3_BRAOL	5.3e-7	32.2	Uncharacterized protein OS=Bra...	[more]

BLAST of Spo25988.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
ATL76_ARATH	3.4e-7	33.3	E3 ubiquitin-protein ligase AT...	[more]
ATL73_ARATH	3.4e-7	39.1	RING-H2 finger protein ATL73 O...	[more]
ATL74_ARATH	4.5e-7	36.2	RING-H2 finger protein ATL74 O...	[more]
ATL75_ARATH	1.3e-6	40.0	RING-H2 finger protein ATL75 O...	[more]
ATL49_ARATH	1.7e-6	34.2	Putative RING-H2 finger protei...	[more]

BLAST of Spo25988.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT1G49210.1	1.9e-8	33.3	RING/U-box superfamily protein	[more]
AT5G05280.1	1.9e-8	39.1	RING/U-box superfamily protein	[more]
AT5G01880.1	2.5e-8	36.2	RING/U-box superfamily protein	[more]
AT1G49200.1	7.4e-8	40.0	RING/U-box superfamily protein	[more]
AT2G18650.1	9.6e-8	34.2	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 135..179 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 136..179 score: 9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 134..181 score: 2.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 125..183 score: 2.04

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0007127	meiosis I
biological_process	GO:0006310	DNA recombination
biological_process	GO:0003006	developmental process involved in reproduction
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0051276	chromosome organization
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0009653	anatomical structure morphogenesis
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0033043	regulation of organelle organization
biological_process	GO:0009617	response to bacterium
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0010351	lithium ion transport
biological_process	GO:0006869	lipid transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0070647	protein modification by small protein conjugation or removal
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0048481	plant ovule development
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0009556	microsporogenesis
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0010076	maintenance of floral meristem identity
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0010582	floral meristem determinacy
biological_process	GO:0022414	reproductive process
biological_process	GO:0052543	callose deposition in cell wall
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0051090	regulation of DNA-binding transcription factor activity
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0006768	biotin metabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0051260	protein homooligomerization
biological_process	GO:0009103	lipopolysaccharide biosynthetic process
biological_process	GO:0009245	lipid A biosynthetic process
biological_process	GO:0009987	cellular process
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0010200	response to chitin
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009911	positive regulation of flower development
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0009408	response to heat
biological_process	GO:0032880	regulation of protein localization
biological_process	GO:0010304	PSII associated light-harvesting complex II catabolic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0051301	cell division
biological_process	GO:0010260	animal organ senescence
biological_process	GO:0009410	response to xenobiotic stimulus
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0042908	xenobiotic transport
biological_process	GO:0043090	amino acid import
biological_process	GO:0030007	cellular potassium ion homeostasis
biological_process	GO:0009723	response to ethylene
biological_process	GO:0009817	defense response to fungus, incompatible interaction
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0008152	metabolic process
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0009651	response to salt stress
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005875	microtubule associated complex
cellular_component	GO:0031515	tRNA (m1A) methyltransferase complex
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0000900	translation repressor activity, mRNA regulatory element binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005488	binding
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0008281	sulfonylurea receptor activity
molecular_function	GO:0008559	xenobiotic transmembrane transporting ATPase activity
molecular_function	GO:0009029	tetraacyldisaccharide 4'-kinase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0004077	biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo25985	0.77	Barchart \| Table
Spo23332	0.73	Barchart \| Table
Spo12332	0.72	Barchart \| Table
Spo15317	0.72	Barchart \| Table
Spo25987	0.71	Barchart \| Table
Spo09427	0.70	Barchart \| Table
Spo15143	0.70	Barchart \| Table
Spo16801	0.69	Barchart \| Table
Spo22004	0.69	Barchart \| Table
Spo15273	0.69	Barchart \| Table
Spo25981	0.69	Barchart \| Table
Spo00677	0.69	Barchart \| Table
Spo01155	0.68	Barchart \| Table
Spo01628	0.68	Barchart \| Table
Spo26688	0.67	Barchart \| Table
Spo15208	0.67	Barchart \| Table
Spo19018	0.67	Barchart \| Table
Spo19304	0.67	Barchart \| Table
Spo24046	0.67	Barchart \| Table
Spo24331	0.67	Barchart \| Table
Spo11630	0.66	Barchart \| Table
Spo18589	0.66	Barchart \| Table
Spo07829	0.66	Barchart \| Table
Spo03362	0.66	Barchart \| Table
Spo21155	0.66	Barchart \| Table
Spo01122	0.66	Barchart \| Table
Spo11860	0.66	Barchart \| Table
Spo13171	0.66	Barchart \| Table
Spo14723	0.66	Barchart \| Table
Spo24657	0.66	Barchart \| Table
Spo10835	0.66	Barchart \| Table
Spo17450	0.66	Barchart \| Table
Spo10965	0.65	Barchart \| Table
Spo14264	0.65	Barchart \| Table
Spo15995	0.65	Barchart \| Table
Spo16240	0.65	Barchart \| Table
Spo09470	0.65	Barchart \| Table
Spo21591	0.65	Barchart \| Table
Spo09008	0.65	Barchart \| Table
Spo08407	0.65	Barchart \| Table
Spo02665	0.65	Barchart \| Table