Spo25951 (gene)

Overview
NameSpo25951
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 41908905 .. 41910035 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTATAAATACAGATCAAAACATGCTTAAATTCAAGCACATTATTCACAGATCAGAGCTATCAAAGATCTATCAATTAGAGAGCTAATTAAGTAGTTAGCCACCAAATTTGGTAATGGAGAGAGTTATTATGTTCAATTACATGAAGCTAATCATCCTACTTGTTTTTGTGCTTATTGCTTCTGCAGGTTTACTCTCCTTTCATTTCCATAATTATACTTTACATATGCTTTTCACGTATACTCTTTGATCTACATTAAACTTCTGATTTTGTGTTCAATTACATGAAGCTAATCATCCTACTTGAGAAATGCTAAACCGTTTTAATCTAATTAATTTTTGTACTTAAAATGCATGTGAACCTAAATGTTCAATTGGCACATTATATTTTAAATTCATACATATATTTTTTTAGTCGAAGGTATTCTAACTTTGACATTAATTTTTATCTATTCACTTAAAATAGTATTTAGGCCCCATTTTTTTTTCTTTTTCTAGTGGATACTTATACCCCTTTTGGTTCACCTTATTTTTCCTGATCTGATGAACTAACACAGGTCCGATGTACGTAAAGACGTCGGAAACAACCGGCACACAAAGTCTCCATGGCACTAGAGCGGCGGCCGGAGGAAGGAATAAGTTTTATGAGGTGGTTCAAAACACAATAGAAGATCAATTTGAAGCCACAAATAATAAGAAGAAAGAGGCATGTATTATGTATAACAAAAGGTTATCCTTGTGAGCCCTACGCCAAATGTTGTAATTCTTGCCTTGTTGAGCCCGTCCATGGATTCTATTATTGCTCTTGATCAACGGATCTTCCCGTGTCTTGATTAATTTTAACCTAATGTGTGTTGGGTTGGTTTGTTCTCGTATGTTTAAGATAAGTGAGTTATTTTTTCCTTTTAATTTTACATAAGATGAGAGGCTTTCAAGTTCATATGCCTCGTGTTAATCTTATTCATTTACCATTCTTGTATTTTATGTGAGATATTTTGATTTGCAAATGAATATTAAGTATTTATTATAGGTAAATTAGGAATTTATTTTAATGAATAGATATGAGTTTATGTGAGAAATTGTGGCATAGCCTCATAATATTATGCTAAATAATTTTAATTTTTCTTTCTTCT

mRNA sequence

CTATAAATACAGATCAAAACATGCTTAAATTCAAGCACATTATTCACAGATCAGAGCTATCAAAGATCTATCAATTAGAGAGCTAATTAAGTAGTTAGCCACCAAATTTGGTAATGGAGAGAGTTATTATGTTCAATTACATGAAGCTAATCATCCTACTTGTTTTTGTGCTTATTGCTTCTGCAGGTCCGATGTACGTAAAGACGTCGGAAACAACCGGCACACAAAGTCTCCATGGCACTAGAGCGGCGGCCGGAGGAAGGAATAAGTTTTATGAGGTGGTTCAAAACACAATAGAAGATCAATTTGAAGCCACAAATAATAAGAAGAAAGAGGCATGTATTATGTATAACAAAAGGTTATCCTTGTGAGCCCTACGCCAAATGTTGTAATTCTTGCCTTGTTGAGCCCGTCCATGGATTCTATTATTGCTCTTGATCAACGGATCTTCCCGTGTCTTGATTAATTTTAACCTAATGTGTGTTGGGTTGGTTTGTTCTCGTATGTTTAAGATAAGTGAGTTATTTTTTCCTTTTAATTTTACATAAGATGAGAGGCTTTCAAGTTCATATGCCTCGTGTTAATCTTATTCATTTACCATTCTTGTATTTTATGTGAGATATTTTGATTTGCAAATGAATATTAAGTATTTATTATAGGTAAATTAGGAATTTATTTTAATGAATAGATATGAGTTTATGTGAGAAATTGTGGCATAGCCTCATAATATTATGCTAAATAATTTTAATTTTTCTTTCTTCT

Coding sequence (CDS)

ATGGAGAGAGTTATTATGTTCAATTACATGAAGCTAATCATCCTACTTGTTTTTGTGCTTATTGCTTCTGCAGGTCCGATGTACGTAAAGACGTCGGAAACAACCGGCACACAAAGTCTCCATGGCACTAGAGCGGCGGCCGGAGGAAGGAATAAGTTTTATGAGGTGGTTCAAAACACAATAGAAGATCAATTTGAAGCCACAAATAATAAGAAGAAAGAGGCATGTATTATGTATAACAAAAGGTTATCCTTGTGA

Protein sequence

MERVIMFNYMKLIILLVFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNTIEDQFEATNNKKKEACIMYNKRLSL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25951.1Spo25951.1mRNA


Homology
[Close]
BLAST of Spo25951.1 vs. NCBI nr
Match: gi|902234541|gb|KNA23483.1| (hypothetical protein SOVF_024350 [Spinacia oleracea])

HSP 1 Score: 162.2 bits (409), Expect = 4.100e-37
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1 

		  

Query: 1  MERVIMFNYMKLIILLVFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT 60
          MERVIMFNYMKLIILL FVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT
Sbjct: 1  MERVIMFNYMKLIILLAFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT 60

Query: 61 IEDQFEATNNKKKEACIMYNKRLSL 86
          IEDQFEATNNKKKEACIMYNKRLSL
Sbjct: 61 IEDQFEATNNKKKEACIMYNKRLSL 85
[Close]
BLAST of Spo25951.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVJ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_024350 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.900e-37
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1 

		  

Query: 1  MERVIMFNYMKLIILLVFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT 60
          MERVIMFNYMKLIILL FVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT
Sbjct: 1  MERVIMFNYMKLIILLAFVLIASAGPMYVKTSETTGTQSLHGTRAAAGGRNKFYEVVQNT 60

Query: 61 IEDQFEATNNKKKEACIMYNKRLSL 86
          IEDQFEATNNKKKEACIMYNKRLSL
Sbjct: 61 IEDQFEATNNKKKEACIMYNKRLSL 85
The following BLAST results are available for this feature:
BLAST of Spo25951.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902234541|gb|KNA23483.1|4.1e-3798.8hypothetical protein SOVF_0243... [more]
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BLAST of Spo25951.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RVJ4_SPIOL2.9e-3798.8Uncharacterized protein OS=Spi... [more]
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BLAST of Spo25951.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25951.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0031408 oxylipin biosynthetic process
biological_process GO:0008152 metabolic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0016165 linoleate 13S-lipoxygenase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo100570.67Barchart | Table
Spo109120.67Barchart | Table