Spo25713.1 (mRNA)

Overview
NameSpo25713.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionTransducin/WD40 repeat-like superfamily protein, putative
LocationSpoScf_00836 : 216708 .. 227857 (+)
Sequence length840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGATGGGCAAGCAAGTGCAGCGAGCAAGGCAAGCACGCCTGGGCAACGATGGATGATGCGCCACAACGTGCGTTGCCTCGCCCAACAGCACGCCAAGGCAGAAGCCAAGGCAGCGACAAGCGCAGCACAACATGCACGCGGGCAGCGTTGGCTGGCCTGTCCAGCAAGCGTTGCCCAGCAGCGCGCCAAGGCGATGGGCGAGTGGGCTGCGCGCAAGCGTGGCGCGCTGGGCCTGACGCATTGGTGCGTTGTTGCTTGGGCTTTGCGGTACGATCAATCGAGTGACAAGGGGTTTGTTGCTTGTTGGACTTGACGAGGCATGGGTGCAAGCCCATGGCCTTGTCTTGACCCGATTGGTTCGTTTTAATTTTAATTTAAAATTTTCAGTTCGGAAATAATTTTAATTAATTTTAAAATTAATAATTTAAATTGTTTTCTCGGATTTTAATTTTGAATATTATAATTATTATAAATTTTAATTTATACTAATTATTTTACTAAAATTAAACCTTGAATTAATTTAAATTCTTAAATTCAACTGAAAATAAATTAAATAAATGGATTCGATTATAATTTTATATGAGCTTTAAATTTTAATTAAACTTGTATGTTTCCGGTTAGACTAGAAATACATTTTTATGTTTAAAATTAGTAAAGCATATAAAGTTATTGGTTTAAGTGGGAGCCTTTAGTCATAAACTCTTGATTAGGTCTACAAATCCTTTAAGGTTAAACAACTTGATTAGAATTAATAAGGACTGAATAATTGGTAGATTATTGGTGCCCTTGATTAATTGCTGAAAATATCTATGTGACGCATAACATGTTTTACTAACCAGCTATGTGGGCCATTCATGATAATGAATGGGTAAATGGTATATATTGTATATGTACTATTTTGCAGGTTATGAAGTGACTAGTATGGCCCAAATAGGATAGAAAATATGGTCTGCGTACCATTAATTTGAATATAATTGGTCTAATGCACCAAAGTTTGTTTTTCAAATTCAAATATGGTCTGCGTACCATCAAATAGTTGTAATTAGTTTAATTATAGCTTATCCTATTTGAAGAAAATGGAGCCTCCCACGGTGAAATTCAAGACGGAGTTTCCAATCCATTTTCAAGACGGACTTTGAAGTTGAAGCTTCAAGATGAAGTCGGGCCATACTAGATCACATTTATCTTATGCATGCTTTAAGTTATTTATTTCTTTTAAATATGTCTTAAATATGCATGAGATTGTGGCTTGATTATGTTGCATGATTAAGGATTTTAGTTCACTTAAAATCTAACCAACATAGTAAGAGCCTTAAGTTCCAAACTTAAAAATTGAGTTAAAAGGTGCCATGCCAAAATAACACTTACTTGGATAACCTTTACATCAATCTTAGTAATAGTTTTCCGCCATAGTGAGGTGTTACTTATTGATTCTAAAGGGGTAAGGTACACAAATATTTGTGAGTACATGTTAGTTTTGGTGAAACTCAACGATATAAGTAAGGAGTCCTTTTATTTCGTGGAAAATTCGATAGGTTTACCTAATAAATTCTTAGACGTACCTATCAACCAAGAGTAGTTTCTAGACTATTAGCAAAAGGCTTTTGCTTACCTAAAATATTTTAGAATTGAGTCAAAATACATAATGTGCTTAATTCTTCAATGATTTAAGGATCTTGGAATAATTTTATTCACACCTACCGGAACAATAAATTCGAATAAAATGCTAATGACTTGTTCAAATTGCATGATTGCTTTAATTTTCAAGTTATTAGTCATGATAAATGTTTAGACTTTGCATGCTTCAATGTATGTTTTAATTATTGTTTATAATTAAATATCTTGCACTGCATTAAATCCTTTTAGAAAGGTAACTATAACTTTCCTCGATTGGTAGTGAATCCAAGAACGATTCACGGAAATGAGAGAAAATGAGCAATTTAAAATGTGCTTTTCTTTTAGCGACTTTTATGGTTGTTTTCGAGTATCAAAGTCGAATGGCAAACCAATTGGTGCTTGTGAATTCAAAATACACCGTAGTTTTGAGATCATAAAGCATTGAGTTTAAACGCTCAGCTTTACCAATGGTTAACAACCTAATATCTTTGTCCATTTAATTCTCGAATGAGTCTAGTCCCTAGACATTCGAATAGATCGATGCTTAGAGAACTTTAGAAGCTTCTGGTAAGATCATCTAGTTGAAACTTAATATTCAACATAAAATGGTAAGAACCTTGTTGGAGTGACATTGGACATGTCTAACAAAGTATAAAAGTCAACACTAGAGAAGTCAAATCTTAAGACTATAAGAAAGGGTACAAGAAATAGGAAAACAAGGAATAAATGAAAGGATTTTACGATTCCGTTTCTACCTATAAGTTTATGTTTAAAGAGAAGTGGCCTAGCAATCAAACTACCTTGGTATCATATAACACTTGAGGTTTTTACTTCGGTAATAACTCAAACAATGGAAGCTAGGCTACACTAATGGCCTACAAGTGGGAAATGAAGCATGGCAATGCTACATTAGTTGTAGGGTCATCTAGTTTGTTTTAAGTCCTTTCAAAGGCTGGAACTTAATGGATATTTTGTTCCACAATCAGCATACCTAAATTTCTGTTTTCAAACACAGAAAGACTCACATTCAGAAAAACAAAAACAATGTTTGTTTGTTTATTTGAATGAAATGGTCAATTACGGGTTGAGTCAATATGCTTGATTAAAACAAACAACTCTTTAAAAATAAAAACTTTACTAGGTTCAAATCAACCCCTTGATTTGAGTTCCACTAATCTTTGGCATTGTTGCTTAGACCATATCAACAAGTTAACGTTCTAAAGCTCTATTTTGATGGACTTTTGAAAGTTGATTGATTTCTAGATCAATTCAAGACAAGCTAGTCTTACTTGTTGAAAGTAACAAAAGATATGAACTATTGTTAGAACGCCTAGACGATAGAGTTCAAAGTTAAAGAAAGAGATTTTATGACTTTATTATTTCACCTAGATTTTAGTGAATATTGGTTTATTTACTCAAAGTGATATAAGTTTGAATCTGTTTGGCTAGTTCAAAGATTCAGAAGTATAAATCCCATTTGGCAAGAAATCATAAAGATCTAGGTTAGATCATATTGATGATTACTTAAGTCAAGAATGATCATCAATGGTTGTTTGTAGTAAATTCACAATCTAGCTCCATAAGATATGGCATATCTAAGTTGGAATGATCGAAGTCAATTAGTACTTGATTCGATCAATGATGAATCATAAAGAATTTTCCTATAATTTCTAAACAAAATGCTCAACTACCACCAAACTAAACCAAATTCGTCAAAGCTATTGAAAAGTAATTTCAGAATATCTTTTCATAATATATCTAAAGAAGTCCTAAACTTAGTGAGAGCTTAGTGTTTGTTATTCAACAAACAAAGGCCCAAGTATAGATATATGTTTCATTGTGATTTATTCAAATGAGACACAAGGGTATTGTTTCTACCACGAATTTTTGAGAACATAATGTTTGTTTGCTCGAAATAATGTCCTTTTGGAGATTCGTTTCCAAAATGACAAGTGGGAGAAAATAGACCTCGAAAGTCTTCGAGGCGAACAAAAAACATAGACGGACATTCCGGAGGCTTTTCGAAGTTCTTCAGAAAATCCGAACACATATTCTTAAGGACTTTAGAAGTGGCTTTAAAGAATAGACATCTCTTAGAAGACTTTACAAGTGCTTCAAGGAGAACAGAATATTCAAAGGACTTTCAAGTGGCTATTGATATTCTATTGTTTGATGTTCTATACCCAAGTAGGCATAGAGTTCAAGTCACTGGAACTATGAGATTCTTCAATTAGATAGTGAAGAAACATGGAGTTCAGGTCACTGAAGCTATGCGATTCTTCTATTAGATAGTGAAGAAACCTACGACTTGTAGTTAAACTATTATCATGTAGATTAATGAGTTTGTGACCTGTAAGAAAGCTATGACGAAACCCAGATTCCCTAAAATGGTTAGAGGCCATGTATAGACTCAAATGTTTTAAATGGTTAGAGGCCATAAAACATACTCAATGTTTTGATGACAAAATTGAAATTTTNNNNNNNNNNTTTAGAAGCTTCTGGTAAGATCATCTAGTTGAAACTTAATATTCAACATAAAATGGTAAGAACCTTGTTGGAGTGACATTGGACATGTCTAACAAAGTATAAAAGTCAACACTAGAGAAGTCAAATCTTAAGACTATAAGAAAGGGTACAAGAAATAGGAAAACAAGGAATAAATGAAAGGATTTTACGATTCCGTTTCTACCTATAAGTTTATGTTTAAAGAGAAGTGGCCTAGCAATCAAACTACCTTGGTATCATATAACACTTGAGGTTTTTACTTCGGTAATAACTCAAACAATGGAAGCTAGGCTACACTAATGGCCTACAAGTGGGAAATGAAGCATGGCAATGCTACATTAGTTGTAGGGTCATCTAGTTTGTTTTAAGTCCTTTCAAAGGCTGGAACTTAATGGATATTTTGTTCCACAATCAGCATACCTAAATTTCTGTTTTCAAACATAGAAAGACTCACATTCAGAAGAACAAAAACAATGTTTGTTTGTTTATTTGAATGAAATGGTCATTTACGGGTTGAGTCAATATGCTTGATTAAAACAAACAACTCTTTAACAATAAAAACTTTACTGGGTTCAAATCAACCCCTTGATTTGAGTTCCACTAATCTTTGGCATTGTTGCTTAGACCATATCAACAAGTTAACGTTCTAAAGCTCTATTTTGATGGACTTTTGAAAGTTGATTGATTTCTAGATCAATTCAAGACAAGCTAGTCTTACTTGTTGAAAGTAACAAAAGATATGAACTATTGTTAGAACGCCTAGACGATAGAGTTCAAAGTTAAAGAAAGAGATTTTATGACTTTATTATTTCACCTAGATTTTAGTGAATATTGGTTTATTTACTCAAAGTGATATAAGTTTGAATCTGTTTGGCTAGTTCAAAGATTCAGAAGTATAAATCCCATTTGGCAAGAAATCATAAAGATCTAGGTTAGATCATATTGATGATTACTTAAGTCAAGAATGATCATCAATGGTTGTTTGTAGTAAATTCACAATCTAGCTCCATAAGATATGGCATATCTAAGTTGGAATGATCGAAGTCAATTAGTACTTGATTCGATCAATGATGAATCATAAAGAATTTTCCTATAATTTCTAAACAAAATGCTCAACTACCACCAAACTAAACCAAATTCGTCAAAGCTATTGAAAAGTAATTTCAGAATATCTTTTCATAATATATCTAAAGAAGTCCTAAACTTAGTGAGAGCTTAGTGTTTGTTATTCAACAAACAAAGGCCCAAGTATAGATATATGTTTCATTGTGATTTATTCAAATGAGACACAAGGGTATTGTTTCTACCACGAATTTTTGAGAACATAATGTTTGTTTGCTCGAAATAATGTCCTTTTGGAGATTCGTTTCCAAAATGACAAGTGGGAGAAAATAGACCTCGAAAGTCTTCGAGGCGAACAAAAAACATAGACGGACATTCCGGAGGCTTTTCGAAGTTCTTCAGAAAATCCGAACACATATTCTTAAGGACTTTAGAAGTGGCTTTAAAGAATAGACATCTCTTAGAAGACTTTACAAGTGCTTCAAGGAGAACAGAATATTCAAAGGACTTTCAAGTGGCTATTGATATTCTATTGTTTGATGTTCTATACCCAAGTAGGCATAGAGTTCAAGTCACTGGAACTATGAGATTCTTCAATTAGATAGTGAAGAAACATGGAGTTCAGGTCACTGAAGCTATGCGATTCTTCTATTAGATAGTGAAGAAACCTACGACTTGTAGTTAAACTATTATCATGTAGATTAATGAGTTTGTGACCTGTAAGAAAGCTATGACGAAACCCAGATTCCCTAAAATGGTTAGAGGCCATGTATAGACTCAAATGTTTTAAATGGTTAGAGGCCATAAAACATACTCAATGTTTTGATGACAAAATTGAAATTTTGTTGATTTGCAAGAATAGTTTCACACTATTGGTTGCAAGTTTGTTTTAAGGATAAAAACCATTAAACATGAAGTTGTGTTCACACACAAAGCTAGATTGGTTGCTAAAGGTTACAAGCAAATTCACGGTGTGGATTGTGTTGAAACCTCATGCAAAATCGTAATGCTTAAGTCTATAATTCAAGCAATGATTGCATATTGGTACATATGGCAATTGGATGACAAAACGTATTCCTCAATCAAATGTTGGAAGAATACTATGTACATGGCATGTCATAGGATTTGTGGATCCAAATAATTCTTGAAATGAATGCTAGCTTATGAAATCTAAGTACAGATTTAAGCAAGCAATTGGGAATTGGAATTGTATTTTAGTGAAGCTAATAAGTAGTTTAGTTTCATAAAATGTACATGATTCTTATAGATATATAAGAAGTTTAGTGGGAGTACATAAAACTTAATTGGTCCTATGTGTATCACACACATATCTCTCTATTGTGAAATAACATTCAAATGCTAATGACTTAGATTTGAAATTATTCATCAATGACGGACCAAGGGGAAACTTAGTACATACTGGGTAATAAGATCTATTTACAAAGATCTTATAATATTGTTTTGGATTAAGTAATGGCATTTACTAAATCAAACACGAAAGACTCCATTGGAGACATTCGACCCATATGAATAAATCTAAGTAAAGGATGTTTGAACTATGTATAAGCATTTACTAAGTTAAACATCAAAGGATCTAAGTGAGATTCTTAACCTATATTATATGTCAAAGAATTTAGCTGGATTTAGTATCTACTGAAACTAGATAAGCTAAAGTTACATGAATAGAATTCAATTGGGAATTATTCTGCAAAAGAATTTATCATGTATGATATAATATGAGGATCGCCAAAAACGTATCGTAAGGCTTTAGGCATGACGAACATATACCAATCTCTATTGATCTAAGTGAAGATCAACTAGATTGAGATCAAGGAAAACTTATGATACTTGAAGAGGTACATAAGATTAGTTCTTGATTCAAGGAAATAAGGATATGCTAAATATTGATGCTACACGTATAAACACTGGCAAAGGATCAAGAAAGATCCCTTTGGAGTTAACCATTGGCAAGGACGAGCTATAGACACTACTACAAAAATATCATTTAACAGCGTTAATTTAACAGCGCTTTTTACCCTTATGCTGTTAAAGATATCAAATATAATATATTACAGCGCTTATAATAAACGCGCTATCATAAATGCTCATATTACAACGCTTACTCGATATGCCCTGTCATATTTGCAGATGTATAACAACGCTCCAACAACCAACGCTGTCAAATAATATACGAAAAAAAACCTAACACACTCTCAAAACATAAAACAACCGCTTTCTTCCTCCCTCGTTTATTCCCTGCAAAACCCTTATACTGTCAATACTCTCAAATCTCAATCGATCACAACCGGAGCGGCGAAACCCACGGCGGAGATTTCCTTCACGCGGTGTTTCCCTTCGCCTGGCGGCGCTTCCCTTCTCACGACAAGATTGAATAATCGAATTGGAAGGTATACTCCATAGAGTTCAATGAATTTTGCTAATTTATGTTTGGGTTGTTTTTAATTTTGCGTTTTAAGTGTGCGATTATAGTTAATTAATTTTCTTGAATTGGTTTTGTTGGGAAGGGGGTTTGAATTCAATTACGATTGTTTTAATTATGGGTTTTAGGTTTTGGTTTTCCTCACTCCCGTCGTTCTTCGCGAATGCCGTCGCATAATTTCCCAGGGCGAGGTCGTTTTCCCTCTCCTCCTTTTTATCTACATTGTTTCTTTGATTCGTTGATAAAAACTAGGGTTTGGGGTTTCAATTTGTTGGGCAAGGGTTTAAATTTTGAAGCCCGAATTTGTAATGAAAACTCTAATTCTAGTCATTTCTTCTTATTTCGTTGCACTAGTCTGAATATACTAATTGATATGCAAGGTTTTGCACATGAATTGTCCATTAGGTCGTTAGGGGTTAGGAATTGGGATAATTATATCCAAGTTAATTATGGAAGCTCATAAGTAACTTCTCTTATCTATTCATAGTATTCACTTGTCCTGAAACTATCAGCACCGCTCCATTAGTGCTCCATCCAAATTTCCAGTGTTGCATAATCAGTCAAAGTTTCTCTTTATGTTTGTCTGGTACACTATTAAGTTCTCTTCATCCCTTCAATGCAGATTTTCTCATACTATTTTTCACAGAGGCTCTCTTCTACTGTGGTGTCGCAATTTTTCTTTTTCTTATTCACTCTCTGCGTAGCCCCGCTAAAAGTGTTCCTGTTGCCAGCAGTTGTGGAAAGCTAACCACTCAGATGGGGAGTCGTATATCTTCAGTTGCTATTTTGATGCTTAGACAGCTTAGTCTTATTATTCCAATGGTGACAATGGTTTTGTTTGGCCGTGGACTGGTCCTGCAGCATCAGCTTCTCTAGCTCCTTACTTGGTTGGTATTGTTGTACAGTTTGCATTCGAGCAGTATGCAAAATATATGAAATCACCTTCCTGGGCCGTCATTCTAGTTGTATTTCAGGTGAAGTACTCTAAAATGTTTCCTTTGATTAGTACAAAGTATTGAACTATAGACTAATATTCTTCCCTTAGCTTGCCTTTTTATACCTTTTGTGAGAAATATACTTGATTTGTGTTTGTAATGTATGTGAGCTTATTGATATTAGTTGCACCAGATTATGGTTCGTTTTCCAAAATTTTCCCTTGATTCGTTTTTTGGGAATTGACGATTAGTGCTTTGACATGAAACATGTATATAGACTGCATCAACTAAATCGAGCCGCACAACTGGTAACTGCTCTATCTTTCACAGTTAGAGGAGCTGAGATTAATACACACAACTTGGCCAATGGATGCAGCTAAAGAACCTCCCCCAACTCTGGAAACAACAATGTCCTACTTACAAAAATATCTGAGTGAACGACCCAAATGAAGTACGAAGAATGAAACAACCAGTTTACATACAAAGAAAAGGGTTGCAAGAGCTACTTAGTACTCCATGTTTAGACGGATCAGGAAGTTAACTTAGTACATAGTAATTTGAGTTACTTAGTACTCCATGTTTAGACGGATCAGGAAGTTAACTTAGTTATGTTCTTCTAACAAGAGCCTTATAGGCTGGCTTTGCCATGTTGCAGAGGGACTAGTGAGATTCCCCCCCCCCCCTGCACCCACCCCTTATAGTTTCTTCTGTTAGCATAAAGAAGTTACTTTCTTTTTCAAGCTGGCAGTAGCTTCTTTATGCTGACACAAAAGACAACTATAACCCAATAGTAATCAGTGAGGAGGTTCAGATGCAATGGCAGTTCTGCCACAGCAACAATAACCCAAGCTTGCAGTAGCTTCTTCATTTTTCTCACTTATATATTGCACTGTGAAATTTAACAGAGTAGATTTACACTTTATCTCCCTCAGGCCTCAACAATGATGTTTTATGTTTGTATCGATATTCAAGTGTTGGTTTGTTTTTAAGGGTGAAAAAGTGATACTTTCTTGTTGTAAGTGTAGGTGTGACTCATGTGGGTGGAGACATGTTCAAATTGATTCCTTCTGGTGATGCAATCTTCATGAAGGTACTTCCTCTTCATTGTTTGTTTAGTATACATCCTTACATATTTGCTGCCGTGATTTATAACCTCTTCTGCCTAACATTTAATTGATCAGTCTAAATGCATATAAAGATACGGTGATGCATCAGACCTAAAGGACGTAAAATTTAATGGAAAGAACTAAAAATGAACGTAACTAAGAGAAATGGAGCTTCAGTTAGTTAGAAGTTAGTTAGAAAAGTTTGCCTATAATTTACAGCCAGCTCTTATTTATATTTCCTGGTGAAATGCAGGCAGCTCTTGTTGTTTAGTTATGTTTTAAATCTGACTTAATTTTTTGTTTTGACAACGTAACAAACAACAAAAGGGCTAAAGTATTGCGGTTGTAGCTAGGCTATGGGGCTGAATTAATAAAGAACGACGCACTTTCCTACACAAAATATAATCAAAATTAAGAGTAACAGATCGTATGTCCTCTATTATTATGTGTATCTTCTAGGGTGCTTGTGTTGGATCATAAACGGAAGTGATGATATTGATGCAGTCTGTGATGATTTCTATATGCTTGCAAATAACTCAAAATGGACCTAGTTAACCCAAAAGAACCTCCAAAAGACTCTTTATTTATGTTTACAATTACAATAATAAATAATAATATATCTAACTTAATTTAGATAATCGACTGAAATTGACTGATCAAATATCGTTATATGGTAAGAAGAAGGCGTCTATAAGAAGAGTACCTGGTTTTCAGGTGGTTATCTAGAATTTAGTATCTTTTGCCTTTTTCTGTTCAACTCCTATGTTATCTACCTAGTGTTTCGTAATGTTGATTTTGATTTGTGTATAATTGACCCAGTTTTCCCCTGGTGACCCAAGCAAGTTCATGGTTACTATTGCTGATTCCCAGGTCCGGATACTGGGGTTAATGTAATATGTAAATATAAAGGTTGGTTACTCATCTCTGAGTTAATTCTGTTTGAGGCTTCTTCTGAGTCATCTTCACTTAATCAGTATTGAAAGTATAATAGTTGTTTGGTTGCATGTTACAAATCACATTTCCAGGAAGTTTTGCAAATTCAAATTCCCGAAAGTTGTTGAACATTATGCAGTTTTATTTGTACAAAGTTGCTCAGTGAATTTTATTTCTGTCCTAATTTCTGTTATGTTATTTTCTGTTATCAGGTCTTCGAAATGCAAGAAGTCAGATCTCTGCATCATTTACATCAGATGGGAAACACATTATCTCAGCCAGTGAAGACTCTTCTGTTTATGTGTTGGAATCCAATAAATCAGACACATGTCATACAACAATTTCATCTCACTTCAGAAGCAAGAACTCATTGGGTGCGCTATGTTGTTCAACAAATGTATCGTAGATAGATTGCATTGAAGGAATCAAAAATATACTCCGTACAACTCTATTAATTAATGTGTTTTGCATAGTTTAATGTTGTGGTCTGATTTTAGAACATATTTATGTAATCAGTTATATTATAATGACAATTGCAAAAAAAAAA

mRNA sequence

ATGGGCGATGGGCAAGCAAGTGCAGCGAGCAAGGCAAGCACGCCTGGGCAACGATGGATGATGCGCCACAACGTGCGTTGCCTCGCCCAACAGCACGCCAAGGCAGAAGCCAAGGCAGCGACAAGCGCAGCACAACATGCACGCGGGCAGCGTTGGCTGGCCTGTCCAGCAAGCGTTGCCCAGCAGCGCGCCAAGGCGATGGGCGAGTGGGCTGCGCGCAAGCGTGGCGCGCTGGGCCTGACGCATTGGTGCGTTGTTGCTTGGGCTTTGCGCATCAGCTTCTCTAGCTCCTTACTTGGTTGGTATTGTTGTACAGTTTGCATTCGAGCAGTATGCAAAATATATGAAATCACCTTCCTGGGCCGTCATTCTAGTTGTATTTCAGGTGTGACTCATGTGGGTGGAGACATGTTCAAATTGATTCCTTCTGGTGATGCAATCTTCATGAAGGTACTTCCTCTTCATTGTCCGGATACTGGGGTTAATGTAATATGTAAATATAAAGGTCTTCGAAATGCAAGAAGTCAGATCTCTGCATCATTTACATCAGATGGGAAACACATTATCTCAGCCAGTGAAGACTCTTCTGTTTATGTGTTGGAATCCAATAAATCAGACACATGTCATACAACAATTTCATCTCACTTCAGAAGCAAGAACTCATTGGGTGCGCTATGTTGTTCAACAAATGTATCGTAGATAGATTGCATTGAAGGAATCAAAAATATACTCCGTACAACTCTATTAATTAATGTGTTTTGCATAGTTTAATGTTGTGGTCTGATTTTAGAACATATTTATGTAATCAGTTATATTATAATGACAATTGCAAAAAAAAAA

Coding sequence (CDS)

ATGGGCGATGGGCAAGCAAGTGCAGCGAGCAAGGCAAGCACGCCTGGGCAACGATGGATGATGCGCCACAACGTGCGTTGCCTCGCCCAACAGCACGCCAAGGCAGAAGCCAAGGCAGCGACAAGCGCAGCACAACATGCACGCGGGCAGCGTTGGCTGGCCTGTCCAGCAAGCGTTGCCCAGCAGCGCGCCAAGGCGATGGGCGAGTGGGCTGCGCGCAAGCGTGGCGCGCTGGGCCTGACGCATTGGTGCGTTGTTGCTTGGGCTTTGCGCATCAGCTTCTCTAGCTCCTTACTTGGTTGGTATTGTTGTACAGTTTGCATTCGAGCAGTATGCAAAATATATGAAATCACCTTCCTGGGCCGTCATTCTAGTTGTATTTCAGGTGTGACTCATGTGGGTGGAGACATGTTCAAATTGATTCCTTCTGGTGATGCAATCTTCATGAAGGTACTTCCTCTTCATTGTCCGGATACTGGGGTTAATGTAATATGTAAATATAAAGGTCTTCGAAATGCAAGAAGTCAGATCTCTGCATCATTTACATCAGATGGGAAACACATTATCTCAGCCAGTGAAGACTCTTCTGTTTATGTGTTGGAATCCAATAAATCAGACACATGTCATACAACAATTTCATCTCACTTCAGAAGCAAGAACTCATTGGGTGCGCTATGTTGTTCAACAAATGTATCGTAG

Protein sequence

MGDGQASAASKASTPGQRWMMRHNVRCLAQQHAKAEAKAATSAAQHARGQRWLACPASVAQQRAKAMGEWAARKRGALGLTHWCVVAWALRISFSSSLLGWYCCTVCIRAVCKIYEITFLGRHSSCISGVTHVGGDMFKLIPSGDAIFMKVLPLHCPDTGVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYVLESNKSDTCHTTISSHFRSKNSLGALCCSTNVS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo25713Spo25713gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo25713.1Spo25713.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25713.1.exon.1Spo25713.1.exon.1exon
Spo25713.1.exon.2Spo25713.1.exon.2exon
Spo25713.1.exon.3Spo25713.1.exon.3exon
Spo25713.1.exon.4Spo25713.1.exon.4exon
Spo25713.1.exon.5Spo25713.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25713.1.CDS.1Spo25713.1.CDS.1CDS
Spo25713.1.CDS.2Spo25713.1.CDS.2CDS
Spo25713.1.CDS.3Spo25713.1.CDS.3CDS
Spo25713.1.CDS.4Spo25713.1.CDS.4CDS
Spo25713.1.CDS.5Spo25713.1.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo25713.1.utr3p.1Spo25713.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo25713.1 vs. NCBI nr
Match: gi|902189300|gb|KNA11341.1| (hypothetical protein SOVF_136070 [Spinacia oleracea])

HSP 1 Score: 107.1 bits (266), Expect = 4.300e-20
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 1 

		  

Query: 127 ISGVTHVGGDMFKLIPSGDAIFMKVLPLHCPDTGVNVICKYKGLRNARSQISASFTSDGK 186
           I+G     GD  KL+ +     +++L       GVNVICKYKGLRNA SQISASFTSDGK
Sbjct: 519 ITGFQFSPGDPSKLMVTTADSQVRILK------GVNVICKYKGLRNAGSQISASFTSDGK 578

Query: 187 HIISASEDSSVYVLESNKSDTCHTTISSHFRSKNS 222
           HI+SASEDSSVYV +SNKS+T HT ISSHFRSK+S
Sbjct: 579 HIVSASEDSSVYVWDSNKSETGHTPISSHFRSKSS 607
[Close]
BLAST of Spo25713.1 vs. NCBI nr
Match: gi|731311214|ref|XP_010694812.1| (PREDICTED: WD repeat-containing protein 44-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 80.1 bits (196), Expect = 5.600e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 

		  

Query: 160 GVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYVLESNKSDTCHTTISSHFRSK 219
           GV+VICKYKGLRNA SQISA+FTSDG+HI+SASEDS VYV +   SD     +SSH RSK
Sbjct: 544 GVDVICKYKGLRNAGSQISATFTSDGEHIVSASEDSFVYVWDCTNSD---RAVSSHLRSK 602

Query: 220 NS 222
           +S
Sbjct: 604 HS 602
[Close]
BLAST of Spo25713.1 vs. NCBI nr
Match: gi|672166239|ref|XP_008803044.1| (PREDICTED: WD repeat-containing protein 44-like [Phoenix dactylifera])

HSP 1 Score: 75.5 bits (184), Expect = 1.400e-10
Identity = 52/106 (49.06%), Postives = 64/106 (60.38%), Query Frame = 1 

		  

Query: 117 ITFLGRHSSC---ISGVTHVGGDMFKL-IPSGDAIFMKVLPLHCPDTGVNVICKYKGLRN 176
           I+ LG+  S    I+G      D  KL + S D+   KV  LH    GV+++CKYKGLRN
Sbjct: 488 ISLLGKKKSPYKRITGFQFCPSDHRKLMVTSADS---KVQILH----GVDIVCKYKGLRN 547

Query: 177 ARSQISASFTSDGKHIISASEDSSVYVLESNKSDTCHTTISSHFRS 219
           + SQISASFTSDG+HIISASEDS VYV   +  D   +   S  RS
Sbjct: 548 SGSQISASFTSDGRHIISASEDSYVYVWSYSSQDAPRSNQGSRTRS 586
[Close]
BLAST of Spo25713.1 vs. NCBI nr
Match: gi|743854330|ref|XP_010940865.1| (PREDICTED: WD repeat-containing protein YMR102C-like [Elaeis guineensis])

HSP 1 Score: 75.5 bits (184), Expect = 1.400e-10
Identity = 56/107 (52.34%), Postives = 65/107 (60.75%), Query Frame = 1 

		  

Query: 127 ISGVTHVGGDMFKL-IPSGDAIFMKVLPLHCPDTGVNVICKYKGLRNARSQISASFTSDG 186
           I+G      D  KL I S D+   KV  LH    GV+++CKYKGLRN+ SQISASFTSDG
Sbjct: 523 ITGFQFCPSDHRKLMITSADS---KVQILH----GVDIVCKYKGLRNSGSQISASFTSDG 582

Query: 187 KHIISASEDSSVYVLESNKSDTCHTTISSHFRSKNSLGALCCSTNVS 233
           +HIISASEDS VYV   N  DT     S+  +S  S     CS NVS
Sbjct: 583 RHIISASEDSYVYVWSYNSQDTPR---SNQMKSTWSCERFFCS-NVS 618
[Close]
BLAST of Spo25713.1 vs. NCBI nr
Match: gi|719964479|ref|XP_010252806.1| (PREDICTED: WD repeat-containing protein 44 [Nelumbo nucifera])

HSP 1 Score: 71.6 bits (174), Expect = 2.000e-9
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1 

		  

Query: 160 GVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYVLESNKSD 207
           G +VICKY+GLRNA SQISASF SDGKHIISASEDS+VY+   N  D
Sbjct: 545 GFDVICKYRGLRNAGSQISASFASDGKHIISASEDSNVYIWNCNSQD 591
[Close]
BLAST of Spo25713.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136070 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.000e-20
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 1 

		  

Query: 127 ISGVTHVGGDMFKLIPSGDAIFMKVLPLHCPDTGVNVICKYKGLRNARSQISASFTSDGK 186
           I+G     GD  KL+ +     +++L       GVNVICKYKGLRNA SQISASFTSDGK
Sbjct: 519 ITGFQFSPGDPSKLMVTTADSQVRILK------GVNVICKYKGLRNAGSQISASFTSDGK 578

Query: 187 HIISASEDSSVYVLESNKSDTCHTTISSHFRSKNS 222
           HI+SASEDSSVYV +SNKS+T HT ISSHFRSK+S
Sbjct: 579 HIVSASEDSSVYVWDSNKSETGHTPISSHFRSKSS 607
[Close]
BLAST of Spo25713.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D7R7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g002720 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.900e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 

		  

Query: 160 GVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYVLESNKSDTCHTTISSHFRSK 219
           GV+VICKYKGLRNA SQISA+FTSDG+HI+SASEDS VYV +   SD     +SSH RSK
Sbjct: 544 GVDVICKYKGLRNAGSQISATFTSDGEHIVSASEDSFVYVWDCTNSD---RAVSSHLRSK 602

Query: 220 NS 222
           +S
Sbjct: 604 HS 602
[Close]
BLAST of Spo25713.1 vs. UniProtKB/TrEMBL
Match: A5AKI0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019124 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.000e-9
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1 

		  

Query: 160 GVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYVLESNKSDTCHTTISSHFRSK 219
           GV+VICKY+GLRNA SQISASFTSDG HI+SASEDS+VYV      D     +  H ++K
Sbjct: 506 GVDVICKYRGLRNAGSQISASFTSDGMHIVSASEDSNVYVWNCISQD-----VPVHSQAK 562

Query: 220 NS 222
           N+
Sbjct: 566 NN 562
[Close]
BLAST of Spo25713.1 vs. UniProtKB/TrEMBL
Match: F6I6F9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g00160 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.000e-9
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1 

		  

Query: 160 GVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYVLESNKSDTCHTTISSHFRSK 219
           GV+VICKY+GLRNA SQISASFTSDG HI+SASEDS+VYV      D     +  H ++K
Sbjct: 541 GVDVICKYRGLRNAGSQISASFTSDGMHIVSASEDSNVYVWNCISQD-----VPVHSQAK 597

Query: 220 NS 222
           N+
Sbjct: 601 NN 597
[Close]
BLAST of Spo25713.1 vs. UniProtKB/TrEMBL
Match: U5DAQ5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00069p00055450 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.300e-9
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 

		  

Query: 160 GVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYV 200
           GV+VICKYKGLRN  SQISASFTS+GKHI+SASEDS VYV
Sbjct: 559 GVDVICKYKGLRNTGSQISASFTSNGKHIVSASEDSHVYV 598
[Close]
BLAST of Spo25713.1 vs. TAIR (Arabidopsis)
Match: AT5G24320.2 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 5.600e-10
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1 

		  

Query: 159 TGVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYV 200
           +G NV+ KYKG RNA +QISASFT+DGKHI+SA +DSSVYV
Sbjct: 521 SGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYV 561
[Close]
BLAST of Spo25713.1 vs. TAIR (Arabidopsis)
Match: AT5G54200.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.400e-8
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1 

		  

Query: 123 HSSCISGVTHVGGDMFK-LIPSGDAIFMKVLPLHCPDTGVNVICKYKGLRNARSQISASF 182
           H   I+G   V G   + L+ S D+    V        GV+++ K+KG RN  SQISAS 
Sbjct: 600 HHKKITGFQFVAGSSSEVLVTSADSRTRVV-------DGVDLVHKFKGFRNTNSQISASL 659

Query: 183 TSDGKHIISASEDSSVYV 200
           TS+GK ++SASEDS+VYV
Sbjct: 660 TSNGKFLVSASEDSNVYV 670
[Close]
BLAST of Spo25713.1 vs. TAIR (Arabidopsis)
Match: AT3G15470.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 6.800e-8
Identity = 36/114 (31.58%), Postives = 58/114 (50.88%), Query Frame = 1 

		  

Query: 123 HSSCISGVTHVGGDMFKLIPSGDAIFMKVLPLHCPDTGVNVICKYKGLRNARSQISASFT 182
           H   I+G   V G   +++ +     ++V+       G +++ K KG RN  SQISAS T
Sbjct: 645 HQKKITGFQFVPGSSSEVLVTSSDSRIRVVD------GTDLVNKLKGFRNTSSQISASIT 704

Query: 183 SDGKHIISASEDSSVYVLE-----------SNKSDTCHTTISSHFRSKNSLGAL 226
           +DGK+++SASEDS VY+ +           +N  +   T    HF S++   A+
Sbjct: 705 ADGKYVVSASEDSHVYIWKYESPASRPSRSNNNKNVTVTNSYEHFHSQDVSAAI 752
[Close]
BLAST of Spo25713.1 vs. TAIR (Arabidopsis)
Match: AT5G53500.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.500e-7
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1 

		  

Query: 160 GVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYVLESN-KSDTCHTTISSHFRS 219
           G NV+ KYKG+   RS  SAS TSDGKHI+SA EDS+VY+  ++ +S+T        F +
Sbjct: 490 GNNVVRKYKGVCKTRSLTSASLTSDGKHIVSACEDSNVYIWSNDEESETKKIRSFERFSA 549

Query: 220 KNSLGALCC 228
             S+ A  C
Sbjct: 550 NASVAATWC 558
[Close]
BLAST of Spo25713.1 vs. TAIR (Arabidopsis)
Match: AT2G37670.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 5.800e-7
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1 

		  

Query: 160 GVNVICKYKGLRNARSQISASFTSDGKHIISASEDSSVYVLESN---KSDTCHTTISSHF 219
           G  VI K+KG RN  SQ+SAS++ DGK+II ASEDS VY+ +++      T  T    HF
Sbjct: 669 GSEVIHKFKGFRNTCSQLSASYSQDGKYIICASEDSQVYLWKNDFHRTRSTLTTQSHEHF 728

Query: 220 RSKNSLGAL 226
             K+   A+
Sbjct: 729 HCKDVSAAV 737
The following BLAST results are available for this feature:
BLAST of Spo25713.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902189300|gb|KNA11341.1|4.3e-2064.2hypothetical protein SOVF_1360... [more]
gi|731311214|ref|XP_010694812.1|5.6e-1269.3PREDICTED: WD repeat-containin... [more]
gi|672166239|ref|XP_008803044.1|1.4e-1049.0PREDICTED: WD repeat-containin... [more]
gi|743854330|ref|XP_010940865.1|1.4e-1052.3PREDICTED: WD repeat-containin... [more]
gi|719964479|ref|XP_010252806.1|2.0e-974.4PREDICTED: WD repeat-containin... [more]
back to top
BLAST of Spo25713.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QXU2_SPIOL3.0e-2064.2Uncharacterized protein OS=Spi... [more]
A0A0J8D7R7_BETVU3.9e-1269.3Uncharacterized protein OS=Bet... [more]
A5AKI0_VITVI4.0e-961.2Putative uncharacterized prote... [more]
F6I6F9_VITVI4.0e-961.2Putative uncharacterized prote... [more]
U5DAQ5_AMBTC5.3e-985.0Uncharacterized protein OS=Amb... [more]
back to top
BLAST of Spo25713.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo25713.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G24320.25.6e-1073.1Transducin/WD40 repeat-like su... [more]
AT5G54200.11.4e-844.8Transducin/WD40 repeat-like su... [more]
AT3G15470.16.8e-831.5Transducin/WD40 repeat-like su... [more]
AT5G53500.11.5e-746.3Transducin/WD40 repeat-like su... [more]
AT2G37670.15.8e-744.9Transducin/WD40 repeat-like su... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 158..221
score: 1.7E-4coord: 99..117
score: 1.
NoneNo IPR availablePANTHERPTHR14221WD REPEAT DOMAIN 44coord: 158..199
score: 9.5
NoneNo IPR availablePANTHERPTHR14221:SF1TRANSDUCIN/WD40 DOMAIN-CONTAINING PROTEINcoord: 158..199
score: 9.5

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008171 O-methyltransferase activity